BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488786
Length=2820
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19020.1 | Symbols: MEF18 | mitochondrial editing factor 18... 3042 0.0
AT5G19025.1 | Symbols: | Ribosomal protein L34e superfamily pr... 1112 0.0
> AT5G19020.1 | Symbols: MEF18 | mitochondrial editing factor
18 | chr5:6352771-6354828 REVERSE LENGTH=2058
Length=2058
Score = 3042 bits (1647), Expect = 0.0
Identities = 1887/2005 (94%), Gaps = 8/2005 (0%)
Strand=Plus/Plus
Query 820 GCGAGATATTTCTCCT-TTCCGAGTCTGACCCACTTCGATTTCTCCGGCGAGAGCTCCAA 878
||||||| |||| || |||||||| |||||||||||||||||||||||| |||||| |
Sbjct 58 GCGAGATGCTTCT-CTGCTCCGAGTCGGACCCACTTCGATTTCTCCGGCGAAAGCTCCGA 116
Query 879 TATTGAACGAGCTCTTGTCTCCGCTCTTGGATCGTGCGCGTCCAGTAATGACGTCACTTT 938
|| |||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 117 TACTGAACGAGCTCTCGTCTCTGCTCTTGGATCGTGCGCTTCCAGTAATGACGTCACTTG 176
Query 939 TGGCAGACAAATCCATGGCCGTGTCTTGAAATCAGGTCATGATTCTAATGGATTCATCTG 998
||| ||||| || ||| |||||||||||||||| |||| |||||||||||||| ||| ||
Sbjct 177 TGGTAGACAGATTCATTGCCGTGTCTTGAAATCCGGTCTTGATTCTAATGGATACATATG 236
Query 999 TAATAGCGTTCTTAACATGTACGCTAAATGCCGTCTCTTGGTC-GATGCGGAATCTGTTT 1057
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 237 TAATAGCGTTCTTAACATGTACGCTAAATGCCGTCTCTTGG-CTGATGCGGAATCTGTTT 295
Query 1058 TCCGGGCTCACGCGAAGCTTGATTCTGCTTCGTTCAATATTATGGTTGATGGGTATGTTA 1117
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TCAGGGATCACGCGAAGCTTGATTCTGCTTCGTTCAATATTATGGTTGATGGGTATGTTA 355
Query 1118 GATCTCGGAGAC-TTGGAGATGCGCTTAAGTTGTTCGACGTTATGCCTGAGAGAAGCTGT 1176
||||||| |||| |||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 356 GATCTCGTAGACTTTGG-GATGCGCTTAAGTTGTTCGACGTAATGCCTGAGAGAAGCTGT 414
Query 1177 GTCTCGTATACTACTTTGATAAAGGGTTATGCTCAAAACAATCAGTGGAGTGAAGCTATG 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GTCTCGTATACTACTTTGATAAAGGGTTATGCTCAAAACAATCAGTGGAGTGAAGCTATG 474
Query 1237 GAGCTTTTTAGGGAGATGAGAAATTTGGGAATTATGCTAAATGAAGTGACTTTAGTCACT 1296
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 475 GAGCTTTTTAGGGAGATGAGAAATTTGGGAATTATGCTAAATGAAGTTACTTTAGCCACT 534
Query 1297 GTTATATCTGCTTGCTCACATTTGGGTGGGATTTGGGATTGTAGGATGTTGCATAGTTTG 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 535 GTTATATCTGCTTGCTCACATTTGGGTGGGATTTGGGATTGTAGGATGTTGCAGAGTTTG 594
Query 1357 GCTATTAAACTCAAGCTTGATGATCGGGTTTTTGCTTCGACGAATTTGCTGCTTATGTAC 1416
|||||||||||||||||||| | ||| ||||||| ||||||||||||||||| |||||||
Sbjct 595 GCTATTAAACTCAAGCTTGAAGGTCGTGTTTTTGTTTCGACGAATTTGCTGCATATGTAC 654
Query 1417 TGTATCTGCTCATGTTTGAAGGATGCTCGGCAGTTGTTTGATGAAATGCCTGAGAGAAAT 1476
||| | || | |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 655 TGTCTTTGTTTGTGTTTGAAGGATGCTCGGAAGTTGTTTGATGAAATGCCTGAGAGAAAT 714
Query 1477 TTAGTTAGTTGGAACGTGATGTTAAATGGGTACTCAAAAGCTGGACTTATCGAACAAGCT 1536
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 715 TTAGTTACTTGGAACGTGATGTTAAATGGGTACTCAAAAGCTGGACTTATTGAACAGGCT 774
Query 1537 AAGGAATTGTTTGATCAGATTACTGAGAAAGATATTGTCTCGTGGGGTACAATGATTGAT 1596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GAGGAATTGTTTGATCAGATTACTGAGAAAGATATTGTCTCGTGGGGTACAATGATTGAT 834
Query 1597 GGGTGTCTCCGAAAGAATCAGCTTGACGAAGCTCTTGTTTACTACACCGAGATGCTGCGC 1656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GGGTGTCTCCGAAAGAATCAGCTTGACGAAGCTCTTGTTTACTACACCGAGATGCTGCGC 894
Query 1657 CGTGGAATGAAGCCTAGTGAAGTTATGATGGTGGACCTTCTCTCTGCTTCAGCTCGATCA 1716
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 895 TGTGGAATGAAGCCTAGTGAAGTTATGATGGTGGACCTTCTCTCGGCTTCAGCTCGATCA 954
Query 1717 GTAGGCAGTTCCAAAGGTTTGCAGCTTCATGGTACCATCGTGAAAACGGGTTTTGATTGT 1776
|| || || ||||| |||||||| |||||||||||||| ||||||| |||||||||||||
Sbjct 955 GTTGGTAGCTCCAAGGGTTTGCAACTTCATGGTACCATTGTGAAAAGGGGTTTTGATTGT 1014
Query 1777 TATGATTTCTTACAAGCAACGATCATATATTTCTACGCTGTCTCAAATAACCTGAAACTC 1836
||||||||||||||||||||||||||| |||||||||||||||| ||| || | ||||||
Sbjct 1015 TATGATTTCTTACAAGCAACGATCATACATTTCTACGCTGTCTCTAATGACATAAAACTC 1074
Query 1837 GCTCTTCAGCAGTTTGAAGCGAGTGTTAAGGACCACATTGCATCGAGAAACGCGTTGATT 1896
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1075 GCTCTTCAGCAGTTTGAAGCGAGTGTTAAGGACCACATTGCGTCGAGAAACGCGTTGATT 1134
Query 1897 GCAGGATTTGTGAAGAATGGAATGGTTGAGCAGGCAAGAGAAGTATTTGATCAGACTCGT 1956
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1135 GCAGGATTTGTGAAGAATGGAATGGTTGAGCAGGCAAGAGAAGTATTTGATCAGACTCAT 1194
Query 1957 GATAAAGATATCTTTTCATGGAACGCTATGATGTCGGGTTACGCGCAGAGTTTATCGCCT 2016
|||||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct 1195 GATAAAGACATCTTTTCATGGAACGCTATGATATCGGGTTACGCGCAAAGTCTATCGCCT 1254
Query 2017 CAGTTAGCTCTACATCTCTTCCACGAAATGATCAGTAGTAGCCAAGTAAAACCAGATGCA 2076
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1255 CAGTTAGCTCTACATCTATTCCGCGAAATGATCAGTAGTAGCCAAGTAAAACCAGATGCA 1314
Query 2077 ATCACAATGGTTAGTGTTTTCTCTGCAATTTCTTCTCTAGGATCGTTGGAAGAAGGGAAA 2136
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1315 ATCACAATGGTTAGTGTTTTTTCTGCAATTTCTTCTCTAGGATCGTTGGAAGAAGGGAAG 1374
Query 2137 AGAGCGCATGAGTATCTAAACCGTAGCTCGATTCCTCCTAACGACAATCTGATCGCTGCT 2196
||||| ||||| ||||||||| |||| |||||||||| ||||||||||| | |||||||
Sbjct 1375 AGAGCACATGATTATCTAAACTTTAGCACGATTCCTCCCAACGACAATCTAACCGCTGCT 1434
Query 2197 ATAATTAACATGTACGCCAAATGTGGAAGCATCAAAACCGCTCTAAACATTTTCCGCCAA 2256
||||| |||||||||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct 1435 ATAATCGACATGTACGCCAAATGTGGAAGCATCGAAACTGCTCTAAACATTTTCCACCAA 1494
Query 2257 ACAAAGAACATTTTTTCTTCTACAATCTCTCCGTGGAACGCCATCATTTGCGGGTCAGCG 2316
||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1495 ACAAAGAACATTTCTTCTTCTACAATCTCTCCCTGGAACGCCATCATTTGCGGCTCAGCG 1554
Query 2317 ACACATGGCCACGCAAAACTAGCACTTGATCTCTACTCCGATCTCCAATCTCTCCCAATA 2376
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1555 ACACATGGCCATGCAAAACTAGCGCTTGATCTCTACTCCGATCTCCAATCTCTCCCCATC 1614
Query 2377 AAACCAAACAGCATCACTTTTGTCGGTGTCTTGAGCGCCTGCTGCCATGCAGGCCTAGTG 2436
||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1615 AAACCGAACAGCATCACTTTTGTCGGTGTCTTGAGCGCATGCTGCCATGCAGGGCTAGTG 1674
Query 2437 GAGCTAGGTAAAACGTATTTCGAAAGCATGAAGAGCGATCACGGGATCGAGCCAGACATC 2496
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 GAGTTAGGTAAAACGTATTTCGAAAGCATGAAGAGCGATCACGGGATCGAGCCAGACATC 1734
Query 2497 AAGCATTACGGATGTATGGTTGATTTGTTGGGAAAAGCTGGGA-AGTTAGAGGAAGCAAA 2555
|| ||||| ||||||||||||||||| ||||| |||||||||| | ||||||||||| ||
Sbjct 1735 AAACATTATGGATGTATGGTTGATTTATTGGGGAAAGCTGGGAGA-TTAGAGGAAGCTAA 1793
Query 2556 AGAAATGATCAAGAAGATGCCGGTTAAGGCTGATGTGATGATCTGGGGGATGTTATTATC 2615
||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 1794 AGAAATGATCAAGAAGATGCCTGTAAAGGCTGATGTAATGATCTGGGGGATGTTATTATC 1853
Query 2616 GGCTTCACGGATTCACGGGAACGTCGAGGTTGCTGAGCTTGCGGCTACTGAGCTGGCAGC 2675
|||||||| | |||||||||||||||| | || || ||||||||||||||||| |||||
Sbjct 1854 AGCTTCACGAACTCACGGGAACGTCGAGATCGCCGAACTTGCGGCTACTGAGCTAGCAGC 1913
Query 2676 AATTGATCCATCTCACGGAGGATGCAAAGTTATGCTTTCGAACGTTTATGCAGACGCAGG 2735
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1914 GATTGATCCATCTCATGGAGGATGCAAAGTTATGCTTTCGAACGTTTATGCAGACGCAGG 1973
Query 2736 GAGATGGGAAGATGTAGCTTTGGTTAGAGAAGTGATGCAAACAAGAGATGTTGAGTGGTC 2795
|||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||
Sbjct 1974 GAGATGGGAAGATGTAGCTTTGGTTAGAGAAGAGATGCGAACGAGAGATGTTGAGTGGTC 2033
Query 2796 ACGTGCCTTCAGTGGTGTTGTGTGA 2820
|||||||||||||||||||||||||
Sbjct 2034 ACGTGCCTTCAGTGGTGTTGTGTGA 2058
> AT5G19025.1 | Symbols: | Ribosomal protein L34e superfamily
protein | chr5:6355220-6357083 REVERSE LENGTH=780
Length=780
Score = 1112 bits (602), Expect = 0.0
Identities = 694/738 (94%), Gaps = 8/738 (1%)
Strand=Plus/Plus
Query 1 ATGCTCCATCTCCTCTTCGTCTGCTCCTCCGCCGCCTCCACCACCACCGCCGCAAAAGA- 59
|||||||| | |||||| ||| ||||||||||||||||||||||||||||| | ||||
Sbjct 1 ATGCTCCA--T-CTCTTCCTCTTCTCCTCCGCCGCCTCCACCACCACCGCCGTAGAAGAC 57
Query 60 AGATTCCACCAGCATGCCCCCATCCTCTAGATCTGCCGCTAATCAAAGCTCCTCCTCTTC 119
| ||||||||| ||||||||| || |||||||| ||||||||||||| ||||||||||||
Sbjct 58 A-ATTCCACCACCATGCCCCCTTCTTCTAGATCCGCCGCTAATCAAAACTCCTCCTCTTC 116
Query 120 TCTCCATCTCTGCAAACATTCACCGTCGGCGActctcgacctcttaatcctaatcctcgt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TCTCCATCTCTGCAAACATTCACCGTCGGCGACTCTCGACCTCTTAATCCTAATCCTCGT 176
Query 180 cctcttctccggcacattcctcctctcctcctacttctcctacctaatccactccttatc 239
|||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 177 CCTCTTCTCCGGCACATTCCTCCTCTCCTCTTACTTCTCATACCTTATCCACTCCTTATC 236
Query 240 gctcctctcctctcatttcccttcaatcgccatctccttctcttctctcctccctcctct 299
||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||
Sbjct 237 TCTCCTCTCCTCTCATTTCCCTTCAATCACCATCTCCCTCTCCTCTCTCCTCCCTCCTCT 296
Query 300 aatcttcttcttctcctccGATCACAACACCGAAGATGAAG---ATCATCATCCCTCCGG 356
|||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| ||
Sbjct 297 AATCATCTTCTTCTCCTCCGATCACAGCACCGAAGATGAAGATCATCATCATCCCTCAGG 356
Query 357 AATAATTCCACCTCCGGCATCGTTCTTCTTCGCATTCGCTGTCTTCTTCGCGGCGTCAAT 416
|| ||| || |||||||| |||||||||||||||||||| || || |||||||| |||||
Sbjct 357 AAAAATCCCTCCTCCGGCTTCGTTCTTCTTCGCATTCGCAGTTTTTTTCGCGGCTTCAAT 416
Query 417 TGCGTTTCTGGACCTATGTTGTGGTTCAAGGTCGAGGAAATGTCGTAACCGTAAGTGTAA 476
||||||||| ||||| |||||||||||||| || |||||||||||||||| |||||||||
Sbjct 417 TGCGTTTCTCGACCTGTGTTGTGGTTCAAGATCAAGGAAATGTCGTAACCCTAAGTGTAA 476
Query 477 AGGAATGAAGAAAGCTATGGAGTTTGATTTGCAGTTACAGACAGAGGAATGTGTTAAATC 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AGGAATGAAGAAAGCTATGGAGTTTGATTTGCAGTTACAGACAGAGGAATGTGTTAAATC 536
Query 537 GGGTTCGGTTAAGGAGATTGATCGGTTACCGTGGAAAGGAGGTAGTGAGAGTAATCCTGA 596
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CGGTTCGGTTAAAGAGATTGATCGGTTACCGTGGAAAGGAGGTAGTGAGAGTAATCCTGA 596
Query 597 TTATGAGTGTTTGAGAGCTGAGCTGAGGAAGATGGCTCCGGTTAATGGTCGAGCTGTTTT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TTATGAGTGTTTGAGAGCTGAGCTGAGGAAGATGGCTCCGGTTAATGGTCGAGCTGTTTT 656
Query 657 GATTTTCCGATCAAAATGTGGTTGCCCTATTGCTAAGCTTGAAGGTTGGGGACCTAAGAG 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GATTTTCCGATCAAAATGTGGTTGCCCTATTGCTAAGCTTGAAGGTTGGGGACCTAAGAG 716
Query 717 AGGCCGGCGTCATAAAAA 734
| | ||||||||||||||
Sbjct 717 AAGTCGGCGTCATAAAAA 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 140116271799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5