BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488788
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19050.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2037 0.0
> AT5G19050.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:6369267-6371904 FORWARD LENGTH=1304
Length=1304
Score = 2037 bits (1103), Expect = 0.0
Identities = 1241/1308 (95%), Gaps = 7/1308 (1%)
Strand=Plus/Plus
Query 1 CGAAAGCGAAATCTGAAACCGCCACACACAGTCGCCAAAAATGTCTCTCTCGCTACCCTC 60
||||| ||||||||||||| | ||||||||||||| | | |||||||||||||| || ||
Sbjct 1 CGAAAACGAAATCTGAAACGGTCACACACAGTCGCTAGATATGTCTCTCTCGCTTCCATC 60
Query 61 TTCTTCCGCCGCAGCAGCAGCGGCGGCGGCGTCTACATCGGGATCATCGTCTTCTCCGGC 120
|||||||| | | || | || || |||||||| |||||||||||||| |||||||||||
Sbjct 61 TTCTTCCG-C-C-GC--C-GCTGCTGCGGCGTCAACATCGGGATCATCATCTTCTCCGGC 114
Query 121 GGCTGCTTCGTCTTCCTCAACGACCACGTCCTGGTTCTCCGGAATCGTTCGCGGCCGTGG 180
||||||||||||||||||||| |||||||| ||||||||||| |||||||| || |||||
Sbjct 115 GGCTGCTTCGTCTTCCTCAACAACCACGTCATGGTTCTCCGGGATCGTTCGTGGTCGTGG 174
Query 181 TGACAAATCCGGCACCGCGAAGCTATCTAAAAGCTCTTCCATGGCTGGAGGAGGAAGCGG 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TGATAAATCCGGCACCGCGAAGCTATCTAAAAGCTCTTCCATGGCTGGAGGAGGAAGCGG 234
Query 241 AAGCGGAGATTACGGTGGACCAATCAAAGGGAAGAATCAATTTCGAGGAGTTTTGTTCAA 300
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 235 AAGCGGAGATTACGGTGGACCAATCAAAGGGAAGAATCAATTTCGCGGTGTTTTGTTCAA 294
Query 301 ATACGGTCCCAAATCCATCCAGGTTGCTTTTAAGACCGGAGAGTATAAACAACAAGTGAT 360
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 295 ATACGGTCCTAAATCAATTCAGGTTGCTTTTAAGACCGGAGAGTATAAACAACAAGTGAT 354
Query 361 ATTTATCGGTGGATTAACCGATGGACTTTTAGCTACTGATTACTTGGAACCTCTTGCAAT 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 355 ATTTATCGGTGGATTAACTGATGGACTTTTAGCTACTGATTACTTGGAACCTCTTGCGAT 414
Query 421 TGCTTTGGATAAAGAGAATTGGTCACTTGTTCAACTACTGATGTCCTCGTCATATTCTGG 480
|||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 415 TGCTTTGGATAAAGAGAAATGGTCACTTGTTCAACTACTGATGTCTTCTTCATATTCTGG 474
Query 481 ATTTGGCACTTCCAGCTTGAAACAAGATGCACAAGAAATTGACCAGCTAATAAATTACCT 540
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 475 ATTTGGCACTTCCAGCTTGAAACAAGATGCACAAGAAATCGACCAGCTAATAAACCACCT 534
Query 541 CATCAACAAAGAAAATTCTGAAGGCGTTGTTCTACTTGGTCATAGCACTGGCTGCCAGGA 600
|||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 535 CATCAACAAAGAGAATTCTGAAGGTGTTGTTCTGCTTGGTCATAGCACTGGCTGTCAGGA 594
Query 601 CATTGTGTACTATATGGGAACAAATGCTGCATGCTCCCGAGCTGTCAGAGCTGCAATTTT 660
||||||||| ||||||||||||||||| |||||||||||||||||| | |||||||||||
Sbjct 595 CATTGTGTATTATATGGGAACAAATGCGGCATGCTCCCGAGCTGTCCGGGCTGCAATTTT 654
Query 661 GCAGGCACCGGTCAGCGACAGAGAGTACAAAGCAACGCTTCCTGAAACACCAGCTATGAT 720
|||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 655 ACAGGCACCAGTCAGCGATAGAGAGTACAAAGCAACGCTTCCTGAAACACCTGCTATGAT 714
Query 721 AGACTTGGCTGCAAACATGATAAAAGAAGGTCGAGAAGAGGAGCTAATGCCTAGAGAAGC 780
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 715 AGACTTGGCTGCAAACATGATAAAAGAAGGTCGAGGAGAGGAGCTAATGCCTAGAGAAGC 774
Query 781 TGATCCTTGTGCTCCAATCTCTGCTTATAGATATCACTCCCTCTGCGCTTACATGGGAGA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TGATCCTTGTGCTCCAATCTCTGCTTATAGATATCACTCCCTCTGCGCTTACATGGGAGA 834
Query 841 CGACGATATGTTTAGTTCTGACCTTAGTGATGATCAGTTGAAAACTAGACTTGGGCATAT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 835 TGACGATATGTTTAGTTCTGACCTTAGTGATGATCAGTTGAAAACTAGACTTGGCCATAT 894
Query 901 GGCTCACACACCTTGTCAGGTGATTTTCTCCATGGGTGATGAGTATGTACCAGATTATGT 960
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GGCTAACACACCTTGTCAGGTGATTTTCTCCATGGGTGATGAGTATGTACCAGATTATGT 954
Query 961 CGACAAAAAAGCACTGGTTAATAGATTAAGTAAAGCAATGGGAGGAGCAGAGAAAGTGGA 1020
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 955 CGACAAAAAAGCATTGGTCAATAGATTAAGTAAAGCAATGGGAGGAGCAGAGAAAGTGGA 1014
Query 1021 GATACAGCATGGGAACCACTCTCTCTCCAATAGAGTTCATGAAGCTGTTCAAGCCATTAT 1080
|||| |||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1015 GATAGAGCATGGGAATCATTCTCTCTCCAATAGAGTTCATGAAGCTGTTCAAGCCATCAT 1074
Query 1081 TGGTTTTGTCAAAAGAGAAGGACCCAGTGGTTGGGATGATCCTTGGAGCTAAATCTGTTT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1075 TGGTTTTGTCAAAAGAGAAGGACCCAGTGGTTGGGATGATCCTTGGAGCTAAATCTGCTT 1134
Query 1141 TTTCCATTTATGTGGATGAAAAACTTATCCAAATCTGAATCTCATGAATTAATTCACATC 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1135 TTTCCATTTATGTGGATGAAAAACTTATCCAAATCTGAATCTCATGAATTAATTCACTTC 1194
Query 1201 TTGGCTGATTCAAAACCATCTATCCTTaaaaagtaaaaaagtaaaTTATTGTCCTTTTGT 1260
||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1195 TTGGCTGATTCGTAACCATTTATCCTTAAAAAGTAAAAAAGTAAATTGTTGTCCTTTTGT 1254
Query 1261 TCTGATATATTACTTGGATCATTAAGAAAAATGTCTTCCTTATTATAT 1308
|||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1255 TCTGATATAT-ACTTGGATCATTAAGAAAAGTGTCTTCCTTATTATAT 1301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64357098690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5