BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488789
Length=1830
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19060.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Immunoglo... 2429 0.0
AT3G06150.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1110 0.0
> AT5G19060.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Immunoglobulin-like
fold (InterPro:IPR013783); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G06150.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
chr5:6372799-6374903 FORWARD LENGTH=2105
Length=2105
Score = 2429 bits (1315), Expect = 0.0
Identities = 1590/1721 (92%), Gaps = 26/1721 (2%)
Strand=Plus/Plus
Query 41 AATTTGATTTCTTTCCGA-TTGTCATC-T-TTC-TCAGGCTTCTTCAGATGCCGGAGAAA 96
||||||||||||| |||| |||||||| | ||| |||| ||||||| |||||| |||||
Sbjct 165 AATTTGATTTCTTGCCGATTTGTCATCATCTTCTTCAGATTTCTTCAAATGCCGAAGAAA 224
Query 97 GTAGTGATTCCG--TC-GGCGGTGAGTCCTCTGCATCAATGGAGATTAAGCGCTTTAACA 153
|||||||||||| || |||| |||||||||| ||||||||||||||||| || |||||
Sbjct 225 GTAGTGATTCCGTCTCTGGCGATGAGTCCTCTACATCAATGGAGATTAAGTGCGCTAACA 284
Query 154 TCCCTCGTCTTCTTCCTCATGGTTGTTGTCTGGAGCATTGACGGTTGTACAATCAAAAGC 213
|| ||||||||||||||||| ||||||||||||||||||||| ||||| |||||| ||||
Sbjct 285 TCTCTCGTCTTCTTCCTCATAGTTGTTGTCTGGAGCATTGACAGTTGTTCAATCAGAAGC 344
Query 214 TTCATCGAATCATGGAGATTCAACGCTTACTCCATACGACTCACTTCTCATGGAGATCTA 273
|||||| ||||||||||||||||| ||||||| |||||||||||||||| ||
Sbjct 345 TTCATCAAATCATGGAGATTCAACTCTTACTCTATACGACTCACTTCTC--------CT- 395
Query 274 ACTTCACTGGATCTGAATCCGACCCGAGTGAAGTTTTCTTGGATCTCCGTCGAGCAAGAG 333
|||| ||||||||| ||||||||||||| ||| || | |||||||||||||||||||||
Sbjct 396 CCTTCTCTGGATCTGGATCCGACCCGAGTAAAGCTTGCCTGGATCTCCGTCGAGCAAGAG 455
Query 334 CAGAACTTCACGGCGAATGTACTGAAAAACTGGCTAGCTCCGGGAGGAGAGAAGTGCAGA 393
||||||||||| ||||||||||| ||||||||| |||||||||| |||||||||||||||
Sbjct 456 CAGAACTTCACAGCGAATGTACTCAAAAACTGGTTAGCTCCGGGTGGAGAGAAGTGCAGA 515
Query 394 GAAGGAAAGACCGTCGAGATTTTTGTTCCGGGAATCGACGGGAAGGATTTAGTAGAGTTA 453
|||| ||| ||||| ||||||| ||||||||||||||| ||||||| |||||||||||||
Sbjct 516 GAAGCAAACACCGTTGAGATTTCTGTTCCGGGAATCGAAGGGAAGGGTTTAGTAGAGTTA 575
Query 454 ACGGCTGGTGAGATTCACGAATTCAGATTTCAATCTTTAGATGATTCTGGAAAACGAGTT 513
|||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||
Sbjct 576 ACGGCTGGTGAGATTCACGAATTCAGATTTCATTCTCTAGATGATTCTGGGGAACGAGTT 635
Query 514 TGTATCGGTGGAGATTACTTCGAAACTGATCTTTCCGGTGAAAACTGGAAATCAAGACCA 573
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 636 TGTATCGGTGGAGATTACTTCGAGACTGATCTTTCCGGTGAAAACTGGAAATCAAGACCA 695
Query 574 CCGGTGGAAGATTTAGGAAACGGAACTTACTCTTTATCTCTTCAGATTCATCCTGATTTC 633
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 CCGGTGAAAGATTTAGGAAACGGAACTTACTCTTTATCTCTTCAGATTCATCCTGATTTC 755
Query 634 GCCGGAGATTATAATCTCACTGTTGTTTTACTCTTCCGTCACTTCCAAGGTCTTAAATTT 693
|||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||| ||
Sbjct 756 GCCGGAGATTATGATCTCACCGTTGTTTTACTCTTCCGTCGCTTCCAAGGTCTTAAACTT 815
Query 694 AGTCCC-GCGCGCTTCGCTTTCAACAAAAAGCTACGGAATTTCAAACTACGGTTTATTAA 752
|| ||| || |||||||| ||||||| || |||||| |||||||||||||||||||| ||
Sbjct 816 AG-CCCTGCACGCTTCGCATTCAACAGAACGCTACGAAATTTCAAACTACGGTTTATCAA 874
Query 753 GAACCC-CGACGTTGTTTTACCGGAGCTTCGGAGATGTGA-TCGGTCCGATTTCGACAGA 810
||| || | ||||||||||||||||||| ||||||||||| | | |||||||||||||||
Sbjct 875 GAAACCTC-ACGTTGTTTTACCGGAGCTCCGGAGATGTGAATTG-TCCGATTTCGACAGA 932
Query 811 GATGTTTGGTCCGGACGGTGGATTAGGCTTGGTAAGAACGACGAGTGTGAAATCAGCAAC 870
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 GATGTTTGGTCTGGCCGGTGGATTAGGCTTGGTAAGAACGACGAGTGTGAAATCAGCAAT 992
Query 871 GACGGTCGTTACCGTTGCTTACCGGATGGTTTCCGTTGCCGGAAACCATGGTGCGACGGA 930
|| || ||||||||||||||||| ||||||| |||||||||| |||||||||||||||||
Sbjct 993 GATGGACGTTACCGTTGCTTACCAGATGGTTACCGTTGCCGGGAACCATGGTGCGACGGA 1052
Query 931 GCTTTATCGGAGTTAGAAAGCAACGGTTGGGTTTACTCGAGTCATTGCTCGTTTAAGCTC 990
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1053 GCTTTATCGGCGTTAGAAAGCAATGGTTGGGTTTACTCGAGTCATTGCTCGTTTAAGCTA 1112
Query 991 TTCTCTGGTGAATCAGCTTGGGATTGTTTGAAGAACAAATGGATTTTCTTCTGGGGAGAC 1050
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1113 TTCTCTAGTGAATCAGCTTGGGATTGTTTGAAGAACAAATGGATTTTCTTCTGGGGTGAC 1172
Query 1051 TCTAATCATGTTGATTCGATCAGAAACTTGTTGAATTTTGTCTTGGGTCATCCAGAGATC 1110
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1173 TCTAATCATGTTGATTCGATCAGAAACTTGTTGAACTTTGTCTTGGGTCATCCGGAGATT 1232
Query 1111 GGGGCCGTGCCAAGGAGGTTTGATTTGAAGTTCTCGAATCCGAAGAACTCATCGGAAACA 1170
|| || || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 GGTGCTGTTCCTAGGAGGTTTGATTTGAAGTTCTCGAATCCGAAGAACTCATCGGAAACA 1292
Query 1171 GTTAGGATCACGAGTATTTTCAATGGACATTGGAACGAGACACAAAACTATCAAGGTCTT 1230
||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1293 GTTAGGATCACGAGTATCTTCAATGGACATTGGAACGAGACTCAAAACTATCTAGGTCTT 1352
Query 1231 GATTCACTTAAAGATGATGGCTTTAGAGAATTGCTTAAAAGCTATTTCGCCGAAGAGACC 1290
||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1353 GATTCACTTGAAGATGATAGCTTTAGAGAATTGCTTAAAAGCTATTTCGTCGAAGAGACC 1412
Query 1291 GGTGTACCGGACGTGATGATCGTTAACTCGGGTCTACACGACGGTGTTCACTGGTCTAAC 1350
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1413 GGTGTACCGGACGTGATGATCGTTAACTCGGGTCTACACGACGGTATTCACTGGTCTAAC 1472
Query 1351 CTTAGAGCCTTTACGAAAGGAGCAGAAACCGCGGCT-CGGTTCTGGAGAAACGTTTTCGA 1409
|||||||| ||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 1473 CTTAGAGCATTTACGAAAGGAGCAGAAACCGCGGCTGCG-TTCTGGAGGAACGTTTTCGA 1531
Query 1410 CTCGGTGAAAGCCCGCGGATTGCAACCTCCGGAAGTGGTTTTTAGGAACACGATCGCGAC 1469
||||||||||||||| ||||||| ||||||| ||||| |||| ||||||||||| |||||
Sbjct 1532 CTCGGTGAAAGCCCGGGGATTGCGACCTCCGAAAGTGATTTTCAGGAACACGATAGCGAC 1591
Query 1470 GGGTGGTTACGCGAGGACGCTTGCGTTTAACCCAAGCAAGATGGAAGTGTACAATGGGGT 1529
||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1592 GGGCGGTTACGCGAGGAAGCTTGCGTTTAACCCGAGCAAGATGGAAGTGTACAATGGGGT 1651
Query 1530 GTTTTTGGAGAAAATGAAGGGGTTAGGATTGGTCTCGAGTGTGATTGATAACTTCGATAT 1589
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 1652 GTTTTTAGAGAAAATGAAGGGGTTAGGATTGGTCTCAAGTGTGATTGATAACTTTGACAT 1711
Query 1590 GACGTATCCGTGGCATTTTGATAACCGGTGTAACGACGGGGTTCACTATGGGAGAGCTCC 1649
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||| ||||
Sbjct 1712 GACGTATCCGTGGCATTTTGATAACCGGTGTAACGATGGCGTTCACTATGGAAGACCTCC 1771
Query 1650 GGCGAA-GATGCGGTGGAGAGACGGCGAGATTGGGCATCAGTACTTTGTTGATCTCATGC 1708
|||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1772 GGCGAAAG-TGCGGTGGATAGACGGCGAGATTGGGCATCAGTACTTTGTTGATCTCATGC 1830
Query 1709 TTGTTCATGTCTTGTTAAATGCAATTTGTGTAAGATAGAGT 1749
||||||||||||||||||||||| ||||| || | ||||||
Sbjct 1831 TTGTTCATGTCTTGTTAAATGCAGTTTGTCTACGTTAGAGT 1871
> AT3G06150.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G19060.1);
Has 61 Blast hits to 59 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 58; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:1861797-1864116
REVERSE LENGTH=2188
Length=2188
Score = 1110 bits (601), Expect = 0.0
Identities = 1175/1446 (81%), Gaps = 63/1446 (4%)
Strand=Plus/Plus
Query 335 AGAACTTCACGGCGAATGT-ACTGAAAAACTGGCTAGCTCCGGGAGGAGAGAAGTGCAGA 393
|||| |||||||||||| | | ||| | ||| | ||||||||||||| | ||| |||
Sbjct 600 AGAATTTCACGGCGAATTTGA-TGAGAGGTTGGTTGGCTCCGGGAGGAGCGCCGTGTAGA 658
Query 394 GAAG-GAAAGACCGTCGAGATTTTTGTTCCGGGAATCGACGGGAAGGATT-TAGTAGAGT 451
|||| | |||||||||||||||| ||||| || ||||||||| |||| | || ||||
Sbjct 659 GAAGCG-AAGACCGTCGAGATTTCAGTTCCCGGTGTCGACGGGATTGATTCT-GTGGAGT 716
Query 452 TAACGGCTGGTGAGATTCACGAATTCAGATTTCAATCTTTAGATGATTCTGGAAAACGA- 510
|||| || || |||||||| ||||||| ||||||| | |||| || ||||||||| |
Sbjct 717 TAACCGCCGGAGAGATTCATGAATTCAAATTTCAAGCCATAGACGAATCTGGAAAA-AAC 775
Query 511 GTTTGTATCGGTGGAGATTACTTCGAAACTGATCTTTCCGGTGAAAACTGGAAATCAAGA 570
||||| || ||||| || || ||||| |||||| | ||||| || ||||||||||| |||
Sbjct 776 GTTTGCATTGGTGGGGACTATTTCGAGACTGATATATCCGGCGAGAACTGGAAATCGAGA 835
Query 571 CCACCGGTGGAAGATTTAGGAAACGGAACTTACTCTTTATCTCTT-CAGATTCATCCTGA 629
||||||||| ||||||| || ||||||||||||||||| ||| || ||| ||||||||||
Sbjct 836 CCACCGGTGAAAGATTTCGGCAACGGAACTTACTCTTTCTCT-TTACAGGTTCATCCTGA 894
Query 630 TTTCGCCGGAGATTAT-AATCTCACTGTTGTTTTACTCTTCCGTCACTT-CCAAGGTCTT 687
||||||||||||| | |||||||| || |||||||||||||||| || ||||||||||
Sbjct 895 GTTCGCCGGAGATT-TCAATCTCACCGTCATTTTACTCTTCCGTCA-TTACCAAGGTCTT 952
Query 688 AAATTTAGTCCCGCGCGCTT-CGCTTTCAACAAAAAGCTACGGAAT-TTCAAACTACGGT 745
|| |||||| || | || || ||||| || |||||| || ||| || | | |||| |
Sbjct 953 AAGTTTAGTACCTCACGTTTAGGCTTT-GACCGAAAGCTTCGCAATGTT-AGATTACGCT 1010
Query 746 TTATTAAGAAC-CCCGACGTTGTTTTACCGGAGCTTCGGAGATGTGATCGGTCCGATTTC 804
|| ||||| || || |||||| | | |||||||| ||| |||| | || |||||
Sbjct 1011 TTGTTAAG-ACGCCTGACGTTACTCTGCCGGAGCTCCGGTCATGTAAAAAATCTGATTTT 1069
Query 805 GACAGAGATGTTTGGTCCGGACGGTGGATTAGGCTTGGTAAGAACGACGAGTGTGAAATC 864
||||||||| |||||| ||||| |||| ||||||||| ||||| || |||||| | ||
Sbjct 1070 AACAGAGATGCTTGGTCTGGACGATGGACTAGGCTTGGGAAGAATGATGAGTGTCAGATT 1129
Query 865 AGCAACGACGGTCGTTACCGTTGCTTAC-CGGATGG-TTTCCGTTGCCGGAAACCATGGT 922
||||| ||||| |||||||| ||| | | | | || ||||| |||||||||||| ||||
Sbjct 1130 AGCAATGACGGGCGTTACCGCTGCCT-CGCTG-CGGATTTCCCTTGCCGGAAACCGTGGT 1187
Query 923 GCGACGGAGCTTTATCGGAG-T-TAGAAAGCAACGGTTGGGTTTACTCGAGTCATTGCTC 980
||||||| || | | |||| | |||| || || |||||||||||||| || ||||||||
Sbjct 1188 GCGACGGTGCGGT-T-GGAGCTATAGAGAGTAATGGTTGGGTTTACTCTAGCCATTGCTC 1245
Query 981 GTTT-AAGCTCTTCTCTG-GTGAATCA-GCTTGGGATTGTTTG-AAGAACAAATGGATTT 1036
||| ||||||||||||| | ||| | ||||||||||| ||| ||| |||||||||||
Sbjct 1246 -TTTCAAGCTCTTCTCTGCG-GAA-AAGGCTTGGGATTGCTTGAAAG-GCAAATGGATTT 1301
Query 1037 TCTTCTGGGGAGACTCTAATCATGTTGATTCGATCAGAAACTTGTTGAATTTTGTCTTGG 1096
||||||||||||| || ||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1302 TCTTCTGGGGAGATTCGAATCATGTTGATTCGATCAGAAACTTGCTGAATTTCGTCTTGG 1361
Query 1097 GTCATCCAGAGATCGGGGCCGTGCCAAGGAGGTTTGATTTGAAGTTCTCGAATCCGAAGA 1156
||||||| || ||| || || || |||||||| ||| ||||||| |||||||||||||
Sbjct 1362 GTCATCCTGAAATCCCCGCTGTCCCGAGGAGGTTCGATATGAAGTTTTCGAATCCGAAGA 1421
Query 1157 ACTCATCGGAAACAGTTAGGATCACGAGTAT-TTTCAATGGACATTGGAACGAGACACAA 1215
|| | ||||| || ||||||||||||||||| ||| || || |||||||||||||| |||
Sbjct 1422 ACCCTTCGGAGACTGTTAGGATCACGAGTATCTTT-AACGGTCATTGGAACGAGAC-CAA 1479
Query 1216 -AACTATCAAGGTCTTGATTCACTTAAAGATGATGG-CTTTAGAGAATTGCTTAA-AAGC 1272
|||||||| || |||||||| |||||||| | || ||||||||||||||| || |||
Sbjct 1480 GAACTATCAGGGCCTTGATTCGCTTAAAGA-CAGGGACTTTAGAGAATTGCTCAAGAAG- 1537
Query 1273 TATTTCGCCGAAGAGAC---CGGTGTACCGGACGTGATGATCGTTAACTCGGGTCTACAC 1329
|| ||| |||||| || | |||| || |||||||||||||| |||||||||||||||
Sbjct 1538 TACTTCAACGAAGAAACAAACCGTGTTCCCGACGTGATGATCGTGAACTCGGGTCTACAC 1597
Query 1330 GACGGTG-TTCACTGGTCTAACCTTAGAGCCTTTACGAAAGGAGCAGAAACCGCGGCTCG 1388
||||| | |||||||| ||| |||||||||||| ||||||| || |||||||| ||| |
Sbjct 1598 GACGG-GATTCACTGGACTAGTCTTAGAGCCTTTGCGAAAGGTGCTGAAACCGCAGCT-G 1655
Query 1389 -GTTCTGGAGA-AACGTTTTCGACTCGGT-GAAAGCCCGCGGATTGCAACCTCCGGAAGT 1445
||| |||||| || ||||| ||| ||| |||| | | ||||||||||| || |||||
Sbjct 1656 CGTTTTGGAGAGAA-GTTTTTGACGGGGTCAAAAG-CAGAGGATTGCAACCGCCAGAAGT 1713
Query 1446 GGTTTTTAGGAACACGATCGCGACGGGTGGTTACGCGAGGACGCTTGCGTTTAACCCAAG 1505
| |||| |||||||| |||||||| || || |||||||| | ||| ||||||||||| ||
Sbjct 1714 GATTTTCAGGAACACAATCGCGACAGGCGGGTACGCGAGAATGCTAGCGTTTAACCCGAG 1773
Query 1506 CAAGATGGAAGTGTACAATGGGGTGTTTTTGGAGAAAATGAAGGGGT-TAGGATTGGTCT 1564
||| ||||| | || || || |||||| | ||||||||| |||| | |||||||||
Sbjct 1774 CAAAATGGAGGCGTTTAACGGAGTGTTTCTCGAGAAAATG-AGGGATGCGGGATTGGTCA 1832
Query 1565 CGAGTGTGA-TTGATAACTTCGATATGACGTATCCGTGGCATTTTGATAACCGGTGTAAC 1623
|||| || | ||||||||||||||||||||||||||||||| | |||||||| || |||
Sbjct 1833 CGAGCGT-AGTTGATAACTTCGATATGACGTATCCGTGGCACTACGATAACCGTTGCAAC 1891
Query 1624 GACGGGGTTCACTATGGGAGAGCTCCGGCGAAGATGCGGTGGAGAGACGGCGAGATTGGG 1683
|| || ||||| || || |||||||| ||||| ||||||||||| ||||| ||||||||
Sbjct 1892 GATGGAGTTCATTACGGAAGAGCTCCAGCGAAAATGCGGTGGAGGGACGGTGAGATTGGA 1951
Query 1684 CATCAGTACTTTGTTGATCTC-ATGCTTGTTCATGTCTTGTTAAATGCAATT-TGTGTAA 1741
|||||||||||||| || || ||||| ||||| || ||| | |||||| || |||||||
Sbjct 1952 CATCAGTACTTTGTGGA-CTTGATGCTCGTTCACGTATTGCTGAATGCA-TTGTGTGTAA 2009
Query 1742 GATAGA 1747
||||||
Sbjct 2010 GATAGA 2015
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90561783180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5