BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488790
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19070.1 | Symbols: | SNARE associated Golgi protein family... 1688 0.0
> AT5G19070.1 | Symbols: | SNARE associated Golgi protein family
| chr5:6375245-6377660 FORWARD LENGTH=1357
Length=1357
Score = 1688 bits (914), Expect = 0.0
Identities = 1038/1094 (95%), Gaps = 24/1094 (2%)
Strand=Plus/Plus
Query 234 CCGGCAACGCCGTTGAAATAGTCACCGGAGGCGATTTAGCATCGTAGAG-TCGCCGTTCA 292
|||||||||||||||||||||||||||||| | |||| ||||||||||| ||||| || |
Sbjct 266 CCGGCAACGCCGTTGAAATAGTCACCGGAGACCATTTTGCATCGTAGAGTTCGCCTTTTA 325
Query 293 TGGCGTTCACGTGGGGATCTGCTCTCCGGATTTCTGTTCTCCTTATCCTTGTAGCTGCAA 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 TGGCGTTCACGTGGGGATCTGCTCTCCGGATTTCTGTTCTCCTTATCCTTGTAGCTGCAA 385
Query 353 TTGTCTTAGCTTGTTATTTTCTCCCCGTTGAGAAGCTATTGAAGGATTTTTTGTTATGGG 412
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 386 TTGTCTTAGCTTGTTATTTTCTCCCTGTTGAGAAGCTATTGAAGGATTTTTTGTTATGGG 445
Query 413 TTGAACAAGATCTAGGGCCTTGGGGACCTTTTGCCCTAGCTGTTGCGTACATTCCTCTAA 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 TTGAACAAGATCTAGGGCCTTGGGGACCTTTTGCCCTAGCTGTTGCGTACATTCCTCTAA 505
Query 473 CAGTTTTGGCTGTTCCTGCCTCGGTTCTCACGATCGGTGGTGGCTACCTTTTTGGGCTGC 532
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 506 CAGTTTTGGCTGTTCCTGCCTCGGTTCTCACGCTCGGTGGTGGCTACCTTTTTGGGCTGC 565
Query 533 CAATTGGTTTTGTGGCGGACTCAGTCGGTGCTACACTTGGCTCAGGAGCCGCATTTCTTC 592
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 566 CAATTGGTTTTGTGGCGGACTCAGTCGGTGCTACACTTGGCTCAGGAGCTGCATTTCTAC 625
Query 593 TAGGCCGTACAATTGGAAAACCTTTTGTAGTTGCAAAATTAAAGGATTATCCTCAGTTTC 652
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 TAGGCCGTACGATTGGAAAACCTTTTGTAGTTGCAAAATTAAAGGATTATCCTCAGTTTC 685
Query 653 AGTCAGTGGCACTCGCGATTGAGAAATCCGGCTTCAAGATATGCTTGCTGCTCCGGCTTG 712
| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 686 AATCAGTGGCACTCGCGATAGAGAAATCCGGCTTCAAGATATGCTTGTTGCTCCGGCTTG 745
Query 713 CTCCTCTTCTCCCCTTCAGCATGTTGAACTACCTCTTATCTGTAACACCAATTCGGCTAG 772
|||||||||| || ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 746 CTCCTCTTCTTCCGTTCAGCATGTTGAACTACCTCTTATCTGTCACGCCAATTCGGCTAG 805
Query 773 GTCCATACTTGCTTTCTTCTTGGTTAGGGATGATGCCAATAACACTTGCGTTAGTGTATG 832
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 806 GTCCATACTTGCTTTCTTCGTGGTTAGGGATGATGCCAATAACACTTGCGTTAGTGTATG 865
Query 833 TTGGAACAACTCTAAAAGACCTTTCTGATGTAACTCACAAGTGGAGCGAATTCTCGCTAG 892
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 866 TTGGAACAACTCTAAAAGACCTTTCTGATGTAACTCACAAGTGGAGCGAGTTCTCGCCAG 925
Query 893 GCCGCTGGGCGTTCTTGATTTCGAGCCTTGTAATATCCGTGATATTAATGGTGTGTGTTA 952
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 GTCGCTGGGCGTTCTTGATTTCGAGCCTTGTAATATCCGTGATATTAATGGTGTGTGTTA 985
Query 953 CGAAGGTGGCGAAGGACGCTCTAAGAAAAGCTTTAGCAGAGCACGGAGGAGACATGAACG 1012
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 CAAAGGTGGCGAAGGACGCTCTAAGAAAAGCTTTAGCAGAGCACGGAGGAGACATGAACG 1045
Query 1013 AAGCGGTTGCAGCCTTGCCAGAGCTGACCGTTACTGATGATGCTTCGACGGATTTAAATG 1072
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 AAGCGGTTGCAGCCTTGCCGGAGCTGACCGTTACTGATGATGCTTCGACGGATTTAAATG 1105
Query 1073 AGCCTCTCTTAATAAAGATAGATGCTCAACAACCTCAGGACCAAGTAAACCATAGTCATT 1132
|||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1106 AGCCTCTCTTGATAAAGATAGATGCACAACAACCTCAAGACCAAGTAAACCATAGTCATT 1165
Query 1133 AAAA--A------------CTT--T--GTATAATCTTTATCTTTAACTTACAAAGCATAG 1174
|||| | ||| | ||||||||||||| |||||| |||||||| |||
Sbjct 1166 AAAATTAAGATGATGAATACTTACTTTGTATAATCTTTAT-TTTAACATACAAAGCTTAG 1224
Query 1175 TTTTATTGGTTTGTATAATAA---CATAGATTAAAAATTATTTTTAAAAAGTTGTTTTTT 1231
|||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1225 TTTTCTTGGTTTGTATAATAATAACATAGATTAAAAATTATTTTTAAAAAGTTATTTTT- 1283
Query 1232 CTTAATAACTTTGAGATGTAATTATTAGTTCACAGGGATTTAAAATATTGGATGAATAAA 1291
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1284 CTTAGTAACTTTGAGATGTAATTATTAGTTCACAGAGATTTAAAATATTGGATGAATAAA 1343
Query 1292 AAGAAACTAAATGG 1305
||||||||||||||
Sbjct 1344 AAGAAACTAAATGG 1357
Score = 372 bits (201), Expect = 5e-102
Identities = 225/236 (95%), Gaps = 3/236 (1%)
Strand=Plus/Plus
Query 1 TACGCGCCACGCGGTTTAATGTAACCAGTCACAGTTCTTATGCTTACGCTAAACATGGAG 60
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1 TACGCGCCACGCGGTTTAATGAAACCAGTCACAGTTCTAATGCTTACGCTAAACATGGAG 60
Query 61 TCTCCAAACCAAATCAACGACAATTGAATCCACACCTTCACGAAACCCCCCAAAGTTT-- 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCCAAACCAAATCAACGACAATTGAATCCACACCTTCACGAAACCCCCCAAAGTTTTT 120
Query 119 GTCTTTTTCGGTTTCGGATTACATCATCTCCAAGGCAAGCACCAGCACCAGATTTTCCGC 178
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||
Sbjct 121 GTCTTTTTCGGTTTCGGATTACATCATCTCCAAGACAAGCACCAGCATCAGATTTTCTGC 180
Query 179 ATCCTTAAAGATCTCGTTGCGGTTTTTGTCGGAAAA-TTTCGGTTTGTTGTGGTTC 233
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 181 ATCCTTAAAGATCTCGTTGCGGTTTTTGTCGGAATTGTTTCGATTTGTTGTGGTTC 236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64206497055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5