BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488793
Length=1689
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19090.1 | Symbols: | Heavy metal transport/detoxification ... 955 0.0
AT3G06130.1 | Symbols: | Heavy metal transport/detoxification ... 206 8e-52
> AT5G19090.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr5:6387489-6390024 FORWARD LENGTH=2163
Length=2163
Score = 955 bits (517), Expect = 0.0
Identities = 654/713 (92%), Gaps = 37/713 (5%)
Strand=Plus/Plus
Query 1004 ggcggtggtggtggAGGGGAAGGACCTCCGGGCATGAG--T----AT--GC----CAATG 1051
||||||||||||||||||| |||||||| | ||||||| | || || |||||
Sbjct 1461 GGCGGTGGTGGTGGAGGGGGAGGACCTCAGAGCATGAGTATGCCAATGGGCGGTGCAATG 1520
Query 1052 GGTGGTCCAATGGGTAGTCTACCACAAATGGGTGGTGGTCCCGGTCCAATGAGTAATAAT 1111
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 GGTGGTCCAATGGGAAGTCTACCACAAATGGGTGGTGGTCCCGGTCCAATGAGTAATAAT 1580
Query 1112 ATGCAGGCAGTTCAGGGATTACCCGCAATGGGT--A-CAGGCGGTGGTGGCGGTGGCCCA 1168
|||||||| ||||| |||||||||||||||||| | ||| ||||||||||||||||||
Sbjct 1581 ATGCAGGCGGTTCAAGGATTACCCGCAATGGGTCCAGGAGGTGGTGGTGGCGGTGGCCCA 1640
Query 1169 TCCGCAGGAGCACCACCAGGATATTTCCAAGGCCAAGTCCCCGGCAATGGGGGAGGCGGA 1228
||||||| ||||||||||||||||||||||||||||||| |||| || || |||||||||
Sbjct 1641 TCCGCAGAAGCACCACCAGGATATTTCCAAGGCCAAGTCTCCGGAAACGGCGGAGGCGGA 1700
Query 1229 CAAGACTCAATGCCGGCAAATCCCTACTTacaacagcagcaacagcaacaacaacaacaa 1288
|||||||||||||||| ||| |||||||||||||||||||||||| |||||||||
Sbjct 1701 CAAGACTCAATGCCGGGAAACCCCTACTTACAACAGCAGCAACAG------CAACAACAA 1754
Query 1289 caacaaTACTTAGCGGCGGTTATGAACCAGCAACGAGCCATGGGCACCGAACGGTTCCAG 1348
|||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 1755 CAACAATACTTAGCGGCGGTTATGAACCAGCAACGATCCATGGGAAACGAACGGTTCCAG 1814
Query 1349 CCGATGATGTACGCTAGACCACCACCAGCTGTCAACTATATGCCA-C-C-A---CAACCG 1402
||||||||||||||||||||||| ||||||||||||||||||||| | | | ||||||
Sbjct 1815 CCGATGATGTACGCTAGACCACCGCCAGCTGTCAACTATATGCCACCACAACCGCAACCG 1874
Query 1403 CACCAACAACATCCATACCCGTATCCATATCCGTATCCACACCAGTATCCGCCTCACAAT 1462
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1875 CACCAACAACATCCATACCCGTATCCATATCCGTATCCACCCCAGTATCCGCCTCACAAT 1934
Query 1463 GGTGACCAGTATTCTGATTACTTCAATGACGAGAACACATCAAGCTGCAATATTATGTGA 1522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1935 GGTGACCAGTATTCTGATTACTTCAATGACGAGAACACATCAAGCTGCAATATTATGTGA 1994
Query 1523 ACAA-AA-A-CAAAACTTTCCATAGTTTGT-TCCTGTCTGTGATTATACATGGAAATGGt 1578
|||| || | |||||||||||||||||||| ||| ||||||||||||||||||||||| |
Sbjct 1995 ACAACAACAACAAAACTTTCCATAGTTTGTGTCCGGTCTGTGATTATACATGGAAATG-T 2053
Query 1579 tttttttttCATAATTATTGGGGGTTCTTAGAATCCTTCTTTTTTCTCCTCCAACGGATC 1638
|||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||
Sbjct 2054 TTTTTTTTTCATAATTATTGGGGGTTCTTAGAATCCTT-TTTTTTC-C-TCCAACGGATC 2110
Query 1639 AAATCCTAAATTATATTAGGATTTTCTTTTA-A-TTTGTGATAGTTCTTAAGT 1689
||||||||||||||||||||||||| ||||| | |||||||||||||||||||
Sbjct 2111 AAATCCTAAATTATATTAGGATTTTTTTTTATAATTTGTGATAGTTCTTAAGT 2163
Score = 795 bits (430), Expect = 0.0
Identities = 492/519 (95%), Gaps = 15/519 (3%)
Strand=Plus/Plus
Query 1 AGTAGCAACTTTGCATCATCATCATCAtctctctctctctctctctctctctccctctcA 60
||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1 AGTAGCAACTTTGCATCATCATCGTCA--------TCTCTCTCTCTCTCTCTCCCTCTCA 52
Query 61 TTCTGAAATAGATGAAGTAGAGAAGTTAATGTTCACCAAACTTACTGTAAAGTCTGAAAC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 53 TTCTGAAATAGATGAAGTAGAGAAGTTAATGTTCACCAAACTTACTGTAAAGCCTGAAAC 112
Query 121 TTTCTTCCTTCTTCTTCTTTGCTTCATTCAAATTAATCTTTCAAGAACCAGAGGAGTTGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 113 TTTCTTCCTTCTTCTTCTTTGCTTCATTCAAATTAATCTTTCAAGAACCAGCGGAGTTGT 172
Query 181 CTCAGATCTAGTGATATAAGTGAGGA-AGATTTGAATTTTGTCACCAATTCAAGAAAAGA 239
|||||||||||||||| ||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 173 CTCAGATCTAGTGATAAAAGTGAG-ATAGATTTGAATTTCGTCACCAATTCAAGAAAAGA 231
Query 240 TGAGTAAAGAAGAGTTTATGAAGATCCAGACTTGTGTTCTCAAAGTGAATATTCATTGTG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 TGAGTAAAGAAGAGTTTATGAAGATCCAGACTTGTGTTCTCAAAGTGAATATTCATTGTG 291
Query 300 ATGGTTGTAAACAGAAAGTGAAGAAAATCTTGCAGAAAATTGAAGGTGTTTTCACGACAA 359
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 ATGGTTGTAAGCAGAAAGTGAAGAAAATCTTGCAGAAAATTGAAGGTGTTTTCACGACAA 351
Query 360 AGATAGACGCAGAGCAAGGGAAAGTGACTGTATCTGGAAACGTAGACCCATCAGTTCTTA 419
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 352 AGATAGACGCAGAGCTAGGGAAAGTGACTGTATCTGGAAACGTCGACCCATCAGTTCTTA 411
Query 420 TCAAGAAGCTCTTGAAA-CTTGGTAAACATGCCGAAATTTGGGAGAGCTCA-AAGGGAGG 477
||||||||||||||||| || ||||||||||||||||| |||| |||||| ||||||||
Sbjct 412 TCAAGAAGCTCTTGAAATCT-GGTAAACATGCCGAAATCTGGG-GAGCTCCCAAGGGAGG 469
Query 478 AAATAACAACAATCAGAACCAACC-AACTTGGCCAATCA 515
| ||||||||||||||||||||| ||||||||||||||
Sbjct 470 ATCTAACAACAATCAGAACCAACCCAACTTGGCCAATCA 508
Score = 606 bits (328), Expect = 2e-172
Identities = 386/414 (93%), Gaps = 3/414 (1%)
Strand=Plus/Plus
Query 521 GGAGGCggtggtggtggtggtggaggtggcggtggACCACCGAAGATGGTTCTTCCGCAG 580
||||| || || || || || || ||||| || |||||||||||||||||| |||| |||
Sbjct 612 GGAGGAGGAGGCGGCGGCGGAGGTGGTGGTGGCGGACCACCGAAGATGGTTATTCCACAG 671
Query 581 TTAACTCCACAACAGATGCAGCAATTGAATCCTCAGCAGCTTCAGCAGCTACAACAACTT 640
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 672 TTAACACCACAACAGATGCAGCAGTTGAATCCTCAACAGCTTCAGCAGCTACAACAACTT 731
Query 641 CAGCAGATGAAAGGGTTTCAAGATCTGAAGCTTCCTCCTCAGTTAAAGGGTGGTCCAGGT 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 CAGCAGATGAAAGGGTTTCAAGATCTGAAGCTTCCTCCTCAGTTAAAGGGTGGTCCAGGT 791
Query 701 CCTGGACCTGGCTCTGTTCCTATGAACAAGAATCCACAGCTACCTAATAATCCTAATCAG 760
|| |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 792 CCGGGACCTGGCTCTGTTCCTATGAACAAGAATCCTCAGATGCCTAATAATCCTAATCAG 851
Query 761 AAGGCTGTGAAGTTCAATGTTCCGgatgatgatgatgacgaggacgatttcagtgatgaa 820
||||||||||||||||||||||| |||||||||||| ||||| ||||| |||||||||
Sbjct 852 AAGGCTGTGAAGTTCAATGTTCC---TGATGATGATGATGAGGAAGATTTTAGTGATGAA 908
Query 821 ttcgatgatgagtttgatgatgatgatgacgagtttgatgatgatttggaagatgatgag 880
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 909 TTCGATGATGAGTTTGATGAAGATGACGACGAGTTTGATGATGATTTGGAAGATGATGAG 968
Query 881 tttgaCGACCACCCACCTCCGCCTAACAAGATGAAGCCTATGATGGGCGGTGGT 934
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 969 TTTGACGACCACCCACCTCCGCCTAACAAAATGAAGCCTATGATGGGTGGTGGT 1022
> AT3G06130.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr3:1852889-1855063 REVERSE LENGTH=1865
Length=1865
Score = 206 bits (111), Expect = 8e-52
Identities = 213/261 (82%), Gaps = 12/261 (5%)
Strand=Plus/Plus
Query 1271 cagcaacaacaacaacaacaacaaTACTTAGCGGCGGTTATGAACCAGCAACGAGCCATG 1330
|||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 1449 CAGCAACAGCAACAACAACAGCAATATTTAGCGGCGGTTATGAACCAGCAACGAGCTATG 1508
Query 1331 GGCACCGAACGGTTCCAGCCGATGATGTACGCTAGACCACCACCAGCTGTCAACTATATG 1390
|| | |||||||||||| || ||||||||||| || |||||||| || || |||||||||
Sbjct 1509 GGGAACGAACGGTTCCAACCAATGATGTACGCAAGGCCACCACCGGCAGTTAACTATATG 1568
Query 1391 CCACCACAACC-GCACCAACAAC--A-TCCATACCCGTATCCATATCCGTATCCACA-CC 1445
|| ||| |||| ||||||| | | | ||| | |||||||| |||||||| || | ||
Sbjct 1569 CCGCCA-AACCCGCACCAATATCCGAATCCGCATCCGTATCCGTATCCGTACCCGTATCC 1627
Query 1446 AGTATCCGCCTCACA-ATGG---TGACCAGTATTCTGATTACTTCAATGACGAGAACACA 1501
| ||||| || | | |||| ||| || || ||| || ||| | ||||||||||||
Sbjct 1628 A-TATCCTCCAC-CTTATGGGAATGATCAATACTCTCATGCCTTTAGCGACGAGAACACA 1685
Query 1502 TCAAGCTGCAATATTATGTGA 1522
||||||||| |||||||||||
Sbjct 1686 TCAAGCTGCGATATTATGTGA 1706
Score = 115 bits (62), Expect = 1e-24
Identities = 81/90 (90%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 599 CAGCAATTGAATCCTCAGCAGCTT-CAGCAGCTACAACAACTTCAGCAGATGAAAGGGTT 657
|||||| ||||||| || || || |||||||| ||||| |||||| |||||||||||||
Sbjct 699 CAGCAACTGAATCCACAACA-TTTGCAGCAGCTTCAACAGCTTCAGAAGATGAAAGGGTT 757
Query 658 TCAAGATCTGAAGCTTCCTCCTCAGTTAAA 687
||||||||||||||||||||||||||||||
Sbjct 758 TCAAGATCTGAAGCTTCCTCCTCAGTTAAA 787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83483506335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5