BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488794
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19100.1 | Symbols: | Eukaryotic aspartyl protease family p... 728 0.0
> AT5G19100.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr5:6408242-6409417 REVERSE LENGTH=1176
Length=1176
Score = 728 bits (394), Expect = 0.0
Identities = 482/525 (92%), Gaps = 4/525 (1%)
Strand=Plus/Plus
Query 576 GATCTTTGCCTCCACGCCTCTGATCGCTAGTGACAAGTCCGGTGAGTACTTAATCGATGT 635
|||||||||||||||||||||||||| || || ||||||||| |||||||||||||||||
Sbjct 654 GATCTTTGCCTCCACGCCTCTGATCGGTAATGGCAAGTCCGGCGAGTACTTAATCGATGT 713
Query 636 GAAGTCCATCCAAATCGGTGGAAAGACCGTTCCTATACTCC-ATGGAACCACAAAGATCA 694
|||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||
Sbjct 714 GAAGTCCATCCAAATCGGTGCAAAGACCGTTCCTATAC-CCTATGGAGCCACAAAGATCA 772
Query 695 GTACTTTGGCTCCTTACACTGTGTTGCAAACTTCCATATACAAGGCTCTTCTCACAGCCT 754
| ||||||||||||||||| || || ||||||||| | ||||||||||| |||||||| |
Sbjct 773 GCACTTTGGCTCCTTACACCGTATTCCAAACTTCCCTTTACAAGGCTCTGCTCACAGCTT 832
Query 755 TCGCCGGAAGCGCCAAGATAGCTAAAGCTCCGGCCGTGAAGCCTTTCGGTGCGTGCTTCC 814
|| ||| || | |||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 833 TCACCGAAAACATCAAGATAGCTAAAGCTCCCGCGGTGAAGCCTTTCGGTGCGTGCTTCT 892
Query 815 GCTCCAATGGAGGACGTGGCGTTCCTGTGATCGACCTGTTGGTGAGGGGAGGGGCTAAGT 874
|||||||||||||||||| ||||| |||||||||||| || |||| |||||||||||||
Sbjct 893 ACTCCAATGGAGGACGTGGAGTTCCCGTGATCGACCTGGTGCTGAGCGGAGGGGCTAAGT 952
Query 875 GGAGGATCTACGGGTCTAATTCGTTGGTGAAGGTGAATAAAAATGTGGTTTGTTTAGGGT 934
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 953 GGAGGATCTACGGGTCTAATTCCTTGGTGAAGGTGAATAAAAATGTGGTTTGTTTAGGGT 1012
Query 935 TTGTGGACGGAGGTGTGAATCCGAAGAACCCGATAGTGATCGGAGGACTTCAGATGGAAG 994
||||||||||||||||||| |||||| |||| ||||||||||||||| |||||||||| |
Sbjct 1013 TTGTGGACGGAGGTGTGAAGCCGAAGTACCCTATAGTGATCGGAGGATTTCAGATGGAGG 1072
Query 995 ATAATTTGGTGGAGTTCGATCTCAAAGCTTCCAAATTTTCTTTCTCTTCTTCTCTTTTGC 1054
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1073 ATAATTTGGTGGAGTTCGATCTTGAAGCTTCCAAATTTTCTTTCTCCTCTTCTCTTTTGC 1132
Query 1055 TTCACAACACTTCTTGCTCAGTGGCAA-GGTTATCTCCTTTTTAA 1098
||||||||||||||||||||||| ||| |||| |||||||| |||
Sbjct 1133 TTCACAACACTTCTTGCTCAGTG-CAAAGGTTGTCTCCTTTCTAA 1176
Score = 704 bits (381), Expect = 0.0
Identities = 465/505 (92%), Gaps = 7/505 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCCTCGTGTGATCTTCTTACTTTTCTCACTTGTTTTCCTCTACCTCGCAAACACA 60
||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||
Sbjct 1 ATGGCTCCTCGTGTGATCTTCTTACTTCTCTCGCTTGTTTTTCTCTACCTCGCAAACACA 60
Query 61 TCACACTCTTTGGA-AAAGTTTCAATCCTTTCTACACCCTATTTATAAAGACAAATCCAC 119
||||||||||| || |||||||||||| ||||||||||||||||||||||||| |||
Sbjct 61 TCACACTCTTT-GAGAAAGTTTCAATCATTTCTACACCCTATTTATAAAGACACGGCCAA 119
Query 120 AAATATCTACTCGATCCCTTTGTCCATCGGCTCCACTACTTCCAGCGAAGAATTCGTCCT 179
|||||| ||| | ||||||||||||||||||| || |||||||||||| ||||||||||
Sbjct 120 AAATATATACACCATCCCTTTGTCCATCGGCT-CA--ACTTCCAGCGAAAAATTCGTCCT 176
Query 180 TGACCTCAACGGAGCCGCACCGTTATTGCAAAACTGCGCCA-CAGCCGCCAAATCCACCA 238
|||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct 177 TGACCTCAACGGAGCCGCACCGTTATTGCAAAACTGT-CCAACCGCCGCCAAATCCACCA 235
Query 239 CCTACCACCCCATCAAATGCGGCTCCACAAGATGCAACTACGCAAACCCAAACTTCCCTT 298
|||||||||| |||| ||| ||||||||||||||||| ||||||||||| |||||||| |
Sbjct 236 CCTACCACCCAATCAGATGTGGCTCCACAAGATGCAAATACGCAAACCCCAACTTCCCCT 295
Query 299 GTCCCAACAATGTCATCACCAAGAAGAGGACCGTGTGTCGCTCCTCCGACAATGCCCGCC 358
|||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 296 GTCCCAACAATGTCATTGCCAAGAAGAGGACCGTGTGTCTCTCCTCCGACAATTCCCGCC 355
Query 359 TCTTCAGAGACACCGTCCCCTTGTTATACACATTTAATGGAGTATACACTATGGACAGCG 418
| ||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
Sbjct 356 TATTCCGAGACACCGTCCCCTTGTTATACACATTTAATGGAGTTTACACTAGGGACAGTG 415
Query 419 AAAAGAGTTCTTCATTGACTTTGACTTGCTCTGACGGTGCTCCTACCTTAAAACAAAGAA 478
||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 416 AAATGAGTTCTTCATTGACTTTGACTTGCACTGACGGTGCTCCTGCCTTAAAACAAAGAA 475
Query 479 CCGTCGGTCTCGCTAACACCCACTT 503
|| ||||||||||||||||||||||
Sbjct 476 CCATCGGTCTCGCTAACACCCACTT 500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53814984240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5