BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488795
Length=1299
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19120.1 | Symbols: | Eukaryotic aspartyl protease family p... 1552 0.0
> AT5G19120.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr5:6414488-6415907 FORWARD LENGTH=1420
Length=1420
Score = 1552 bits (840), Expect = 0.0
Identities = 1119/1250 (90%), Gaps = 34/1250 (3%)
Strand=Plus/Plus
Query 1 CCAGCGTCGGCCCACCGCATCCCAAACCATAACCCAAAAT-CTTAAAAACCGTCCAGATC 59
||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct 1 CCAGCGTCGGCCCACCGCATCCCAAACCATAACGCTTAATCCTTAAAAACCGTCCAGATC 60
Query 60 CATCTCCTTCC-CCAACACTCTCATCATCACACACACCTGT-TAATGG------CTTCTT 111
||| ||||||| | || | | |||||||||||| || | |||||| ||||||
Sbjct 61 CATTTCCTTCCTCTAA-A---AC-TCATCACACACA-CT-TCTAATGGCTTCTTCTTCTT 113
Query 112 GTCTGAATCTCTTCTTCTTGTCCTTCCTCTCCGCTCT-ATCCATTTCCAAATCTCAGATC 170
|| |||||||||||||||| || || ||||||||||| || |||||| ||||||||||||
Sbjct 114 GTTTGAATCTCTTCTTCTTCTCTTTTCTCTCCGCTCTAAT-CATTTCTAAATCTCAGATC 172
Query 171 TCTGATTCCCTCAACGGAGTCGTTTTCTCTGTTGTTAAAGACCTACCAACCGGTCAATAC 230
||||||||| | ||||| ||||||||| |||||||||||||||| |||||||||||||||
Sbjct 173 TCTGATTCCGTTAACGGGGTCGTTTTCCCTGTTGTTAAAGACCTTCCAACCGGTCAATAC 232
Query 231 ATCGCTCAGATTC-ATCTCGGTGACTCACCGGAGCCAGTTAAGCTCGTCGTCGATCTCGC 289
|||| ||||||| | ||||||||||||||||| ||||| |||||||| |||||||| ||
Sbjct 233 CTCGCACAGATTCGA-CTCGGTGACTCACCGGATCCAGTCAAGCTCGTAGTCGATCTGGC 291
Query 290 CGGCTCAATTCTATGGTTTGATTGTTCCTCAAGACATATATCCTCCTCTCGGAACCTAAT 349
|||||||||||| |||||||||||||||||||||||| | ||||| || ||||||||||
Sbjct 292 CGGCTCAATTCTCTGGTTTGATTGTTCCTCAAGACATGTTTCCTCGTCAAGGAACCTAAT 351
Query 350 CTCCTGTAGCTCTAGCGGCTGCCTAAAGGCTAAAGTTGGGAATGACCGAGTATCATCATC 409
||| ||||||||||||||||| ||||||| |||||||| ||||| ||||||||||||||
Sbjct 352 ATCCGGTAGCTCTAGCGGCTGCTTAAAGGCAAAAGTTGGAAATGAACGAGTATCATCATC 411
Query 410 ATC-GCGT-G-G-AGACCACCAAAACGCTGATTGCGAATTGCTTGTGAGAAACGGCGCCG 465
||| | | | | | | |||||||||| ||||||||||| ||||| | ||||| ||||
Sbjct 412 ATCATCATCGCGTA-AAGACCAAAACGCCGATTGCGAATTACTTGTTAAAAACGACGCCT 470
Query 466 TTGGGATTATGGCGAGAGGGGAGCTTAACAGTGACGTCATGTC-G-T---T-TG-GA--T 516
||||||||| ||||||||| |||||| ||||||||||||||| | | | || | |
Sbjct 471 TTGGGATTACGGCGAGAGGAGAGCTTTTCAGTGACGTCATGTCGGTTGGCTCTGTTACTT 530
Query 517 CTCCGGGAACCGTTGATCTGCTTTTCGCTTGTACTCCACCGTGGCTGTTACGTGGGCTCG 576
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 531 CTCCGGGAACCGTTGATCTACTTTTCGCTTGTACTCCACCGTGGCTGTTACGTGGGCTCG 590
Query 577 CTAGTGGAGCCCAAGGAGTAATGGGCTTAGGAAGGGCCCAAATCTCTCTTCCTTCACAAC 636
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 591 CTAGTGGAGCCCAAGGAGTAATGGGCTTAGGAAGGGCCCAAATCTCACTCCCTTCACAAC 650
Query 637 TCGCCGCGGAAACTAATGAACGCCGTCGTTTAACTGTTTTCCTGTCGCCGTTAAACGGCG 696
|||||||||||||||| ||||| ||||| |||||||||| |||||||||||| ||||| |
Sbjct 651 TCGCCGCGGAAACTAACGAACGTCGTCGGTTAACTGTTTACCTGTCGCCGTTGAACGGTG 710
Query 697 TCGTGTCGACGAGTTCGGTTGAGGAGGTTTTTGGAGTGGCTGCGTCTAGATCGCTGGTTT 756
|||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TCGTATCAACGAGTTCGGTGGAGGAGGTTTTTGGAGTGGCTGCGTCTAGATCGCTGGTTT 770
Query 757 ACACGCCTCTGTTAACCGATTCGAGTGGCAATTACGTAATTAACGTGAAATCGATTAGAG 816
|||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 771 ACACGCCTTTGTTAACCGGTTCGAGTGGCAACTACGTAATTAACGTGAAATCGATTAGAG 830
Query 817 TCAACGGGAAAAAACTCTCCGTGGAAGGTCCGTTGGCGGCGGAGCTGAGCACGGTGGTTC 876
|||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 831 TCAACGGGGAAAAGCTCTCCGTGGAAGGTCCGTTGGCGGTGGAGCTGAGCACGGTGGTTC 890
Query 877 CTTATACGATGCTAGAGAGCTCGATCTACGCGGTATTTGCGGAAGCTTACGCTAAAGCTG 936
|||| ||||| ||||||||||||||||| ||| || |||||||||||||| |||||||
Sbjct 891 CTTACACGATTTTAGAGAGCTCGATCTACAAGGTGTTCGCGGAAGCTTACGCCAAAGCTG 950
Query 937 CGAGTGAAGCTACATCGGTGGCTCCCGTAGCACCGTTCGGGCTCTGTTTCACGAGTGACG 996
|| ||||||||||||||||| |||| || |||||||| |||||||| ||||| |||||||
Sbjct 951 CGGGTGAAGCTACATCGGTGCCTCCTGTCGCACCGTTTGGGCTCTGCTTCACTAGTGACG 1010
Query 997 TAGAGTTTCCGGCGGTGGATCTGGCGTTGCAGAGTGAGATGGTGAGGTGGAGGATCCAGG 1056
|||| ||||||||||| ||||| ||||||||||||||||||||| |||||||||| || |
Sbjct 1011 TAGATTTTCCGGCGGTAGATCTAGCGTTGCAGAGTGAGATGGTGCGGTGGAGGATTCATG 1070
Query 1057 GGAAGAATCTAATGGTGGATGTTGGTGGTGGAGTCCGATGCTTGGGAATTGTTGACGGCG 1116
|||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1071 GGAAGAATCTGATGGTGGATGTTGGTGGTGGAGTCCGATGCTCGGGGATTGTTGACGGCG 1130
Query 1117 GGTCGAGTCGGGTCAACCCGATTGTAATGGGTGGGCTACAATTAGAAGGCTTGATATTGG 1176
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1131 GGTCAAGTCGAGTCAACCCGATTGTAATGGGTGGGCTACAATTAGAAGGCTTTATATTGG 1190
Query 1177 ATTTTGATTTGGGTAACTCAATGATGGGCTTTGGGCAAAGAACACGTTCT 1226
| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1191 ACTTTGATTTGGGTAACTCAATGATGGGCTTTGGACAAAGAACACGCTCT 1240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63905293785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5