BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488797
Length=2343
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19130.1 | Symbols: | GPI transamidase component family pro... 3579 0.0
> AT5G19130.1 | Symbols: | GPI transamidase component family protein
/ Gaa1-like family protein | chr5:6415920-6419035 REVERSE
LENGTH=2350
Length=2350
Score = 3579 bits (1938), Expect = 0.0
Identities = 2223/2358 (94%), Gaps = 29/2358 (1%)
Strand=Plus/Plus
Query 1 GGTTCGAATCTCCCGAAATTGATCGGAGATCTGTGGATCATGGCGGCGGTGAAACGGGAA 60
||||||||||| ||||||||||||| ||||||||| |||||||| |||||||| |||||
Sbjct 4 GGTTCGAATCTGCCGAAATTGATCGAAGATCTGTGAATCATGGCAGCGGTGAACCGGGAT 63
Query 61 AATGAAGAGGAGGTGAAGACCGATGATGGATCTCCTAAAATCAAACCGAGACCAATCGTT 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 AATGAAGAGGAAGTGAAGACCGATGATGGATCTCCTAAAATCAAACCGAGACCAATCGTT 123
Query 121 CGGCTAGGAATCTTTCTCATCGCTCACAGTCCCATCTTCAGTGTGGTTTTCTCTGCTGCT 180
||||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 124 CGGCTCGGAATCTTCCTCATCGCTCACAGTCCTGTTTTCAGTGTGGTTTTCTCTGCTGCT 183
Query 181 GGGGTTTTGGCGCTGCTGCTTTTGCCGCTACTGGCAAAGAACACTTACATCTCCGAGAAT 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 184 GGGGTTTTGGCGCTGCTGCTTTTGCCTCTACTGGCAAAGAACACTTACATCTCCGAGAAT 243
Query 241 GCTCTAATGCCAGGCTCTGCACGGTCTATGCTCTCTAATCAG-GATGTTTCTGATGGAAG 299
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 244 GCTCTAATGCCAGGCTCTGCACGGTCTATGCTCTCTAATC-GAGATGTTTCTGATGGAAG 302
Query 300 CAAACTGGTGAAAGACATAAAGAATTTTAGGTTGAATCATGAAGGCCAGGGTGTCGAAGT 359
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 303 CAAACTGGTGAAGGACATAAAGAACTTTAGGTTGAATCATGAAGGCCAGGGTGTTGAAGT 362
Query 360 CCAGAAGCTTATTGGAACATACATGTCAGAAATGGGTGCAGAAGTTTCTTATCAAAAGTT 419
||| ||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 363 CCAAAAGCTCATTGGAAAATACATGTCAGATATGGGTGCAGAAGTTTCTTATCAAAAGTT 422
Query 420 CCATCCTGAAGGGAATCAATTTCACCCTCTGCACTTTTTCTCCGGTCCTGATTCATATAC 479
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 423 CCATCCTGAAGGGAATCAATTTCACCCCCTGCACTTTTTCTCCGGTCCAGATTCATATAC 482
Query 480 ATTGCTGGAGAATGTCAGTTGTGCTTCTTATGGGGTCAATGTTGCGGGGATTATAAGAGC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 ATTGCTGGAGAATGTCAGTTGTGCTTCTTATGGGGTCAATGTTGCGGGGATTATAAGAGC 542
Query 540 CCCTCGTGGTGATGGAAAAGAGTCTATTGTGCTGGTTACTCCCTATGATTTTATAAATGG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 CCCTCGTGGTGATGGAAAAGAGTCTATTGTGCTGGTTACTCCCTATGATTTTATAAATGG 602
Query 600 TGGAGATTATGAG-AGTTTGTCTTTAGGAATTGTCAGCTCACTTTTTTCCTTGCTCTCTA 658
|||||| |||||| | ||||||||||||||||||||| || |||||||||||||||||||
Sbjct 603 TGGAGACTATGAGGA-TTTGTCTTTAGGAATTGTCAGTTCTCTTTTTTCCTTGCTCTCTA 661
Query 659 GAGTTACCTGGCTTTCCAAAGACATAATATGGCTTGTCGCTGATTCTCGTTATGGAGACT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GAGTTACCTGGCTTTCCAAAGACATAATATGGCTTGTCGCTGATTCTCGTTATGGAGACT 721
Query 719 ATAGGCCTGTTGCTGCGTGGTTAACTGAATACCACTCACCTTCATTCAAGGTCTCGGATC 778
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 722 ATAGGCCTGTTGCTGCGTGGTTAACTGAATACCACTCACCTTCATTTAAGGTCTCGGATC 781
Query 779 TTCTGAAGTGTAACGAGCTAAATACAGCTGATAACTTCAGACGAGCTGGAACAGTGGCTG 838
||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 782 TTCTGAAGTGTGACGAGCAAAATACAGCTGATAACTTCAGACGAGCTGGAACAATGGCTG 841
Query 839 CTGCTTTGGTTTTGAAGGTTGATGGTAGAAGTGACAGGTTTGAGGACACACTAAGTATCT 898
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 842 CTGCTTTGGTTTTGAAGGTTGATGGTAGAAGTGAAAAGTTTGAGGACACACTAAGTATCT 901
Query 899 ATGCAGAGGCATCTAATGGGCAGATGCCAAATCTCGATCTCATCAATGTTGTAAATTACT 958
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 902 ATGCAGAGGCATCTAATGGGCAGATGCCAAATCTCGACCTCATCAATGTTGTAAATTACT 961
Query 959 TAGCGGTCCACAGGCAGGGTTTTTATGTCAAGGTGGAGAAGGTTGTATCTTTACTTTCCT 1018
||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 962 TAGCGGTGCACAGGCAGGGGTTTTATGTCAAGGTTGAGAAGGTTGTATCTTTACTTTCCT 1021
Query 1019 CTAGTTGGCTAAAGTTTTTTGGGGAAATATTTGAAGCTGTTGGGAAATTGGGGCATACGT 1078
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1022 CTAGTTGGCTAAAGATTTTTGGGGAAATATTTGAAGCTGTTGGGAAATTGGCGCATATGT 1081
Query 1079 TAAATCCGGACTGGAATTTTGGTATCCCAGCCGCAGACTATCTTGAAGGCAGTGCTACCC 1138
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1082 TAAATCCGGACTGGAATTTTGGTATCCCAGCTGCAGACTATCTTGAAGGCAGTGCTACCC 1141
Query 1139 TTGCAAGTTCCCTGTACTCCCAGGCCCTTGGTATACCAACTGGTCCTCATGGAGCTTTCC 1198
|||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1142 TTGCAAGTTCACTGTACTCCCAGGCCCTTGGTATCCCAACTGGTCCCCATGGAGCTTTCC 1201
Query 1199 GCGATTATCAAGTTGATGCAATTACTTTGAAAGTTTCACCTAGATTTCCTCCTGACAGTA 1258
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1202 GCGATTATCAAGTTGATGCTATAACTTTGAAAGTTTCACCTAGATTTCCTCCTGACAGTA 1261
Query 1259 AGACAAGACAACACGAATTCTTTCTACGAGGTGCCCGGTTACTGGAAGGAACTATAAGAT 1318
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 AGACAAGACAACACGATTTCTTTCTACGAGGTGCCCGGTTACTGGAAGGAACTATAAGAT 1321
Query 1319 CAGTGAACAACCTCCTCGAGAAGTTCCATCAATCGTTTTTCCTTTACCTGTTAACTTCGC 1378
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1322 CAGTGAACAACCTCCTTGAGAAGTTCCATCAATCGTTTTTCCTTTACATGTTAACTTCGC 1381
Query 1379 CAAGCAAATTTATCTCTGTAGGAGTCTACATGATTGCCTTTGCTCTTCTTGTAGCCCCTC 1438
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1382 CAAGCAAATTTATCTCTGTAGGAGTCTACATGATTGCCTTTGCTCTTCTTGTTGCCCCTC 1441
Query 1439 TTCCAATGGTCGCAGCCTCTTTATACATTGACGGATGTAAAGCTCTTACCAATTCCACTC 1498
|||||||||||||||||||||||||||| || || |||||| ||||||||||||||||||
Sbjct 1442 TTCCAATGGTCGCAGCCTCTTTATACATCGATGGCTGTAAATCTCTTACCAATTCCACTC 1501
Query 1499 ATAACCCTGCCGAAAACTTCAAGTCCTGGAAATGGCTAGATGCAGCCAAACAGGTCTTTG 1558
||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1502 ATAACCCAACCGAAAACTTCAAGTCTTGGAAATGGCTAGATGCAGCGAAACAGGTCTTTA 1561
Query 1559 CTTTGCACTTGTTGGGTTTCATCGTCACACTGCTTCCTTATTTTATCTGTCAACTACCGG 1618
|||||||||||||||||||||| ||||| ||||| |||||||| ||||||||| ||||||
Sbjct 1562 CTTTGCACTTGTTGGGTTTCATTGTCACGCTGCTACCTTATTTCATCTGTCAAGTACCGG 1621
Query 1619 GCCAACATTCTCCAAGAAACCGCTCCATTATGTGGGGTACTACCTCTTCGTCGCTTCTCC 1678
||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1622 GCCAACATTCTCCAACAAACCGCTCCATCATGTGGGGCACTACCTCTTCGTCGCTTCTCC 1681
Query 1679 TTATAACCTTTGTCACAATCCCGGGTTGCTCTCCGTTCTCCTCTCGACTCCATCGAAACA 1738
||||||||||||||||||| || |||||||||||||||||||||||||||||| ||| ||
Sbjct 1682 TTATAACCTTTGTCACAATGCCTGGTTGCTCTCCGTTCTCCTCTCGACTCCATGGAACCA 1741
Query 1739 ACTGGGCTGTCTTGAAATCAGTGACCATCGCAGCTGCCTTCATCGGTCTATGCCTCATGT 1798
||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1742 ACTGGGCCATCTTGAAATCAGTGACCATCTCAGCTGCCTTCATCGGCCTATGCCTCATGT 1801
Query 1799 CCATAATCAATTTCGCCACCGCAGAGATTGGAGCATTGCTACTAGTGCCAACGTGTCTAA 1858
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1802 CCATAATCAATTTTGCCACCGCAGAGATTGGAGCGTTGCTACTAGTGCCAACGTGTCTTA 1861
Query 1859 TGGCTCAGCCTATAAAACCAGCTCTGAGATCCAGAAGCATTAAGAGCCTGTTGGGTGCGC 1918
||||||||||||||||||| ||| ||||||||||| || ||||||||||||||||||||
Sbjct 1862 TGGCTCAGCCTATAAAACCCGCTTTGAGATCCAGACGCCTTAAGAGCCTGTTGGGTGCGT 1921
Query 1919 TTTGCAGC-TTGGTGTTGGTGACCATCGGGTTCCCGGTCATGTTTTTCGCAATCTCAAAA 1977
||||||| ||| | ||| |||| ||||||||||||||||||||||| |||||||| |||
Sbjct 1922 TTTGCAGTATTG-TATTGCTGACAATCGGGTTCCCGGTCATGTTTTTTGCAATCTCTAAA 1980
Query 1978 GGGTTGCTTGGAGAAGGGCTCGTAGGTTTGAGTCTTGGAGGAGAGTTTTGGACATGGTTA 2037
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1981 GGGTTGCTTGGAGAAGGCCTCGTAGGGTTGAGTCTTGGAGGAGAGTTTTGGACATGGTTA 2040
Query 2038 GAGTCGCTTTGGGCGTGGAAGAGTGCGACATATCTATACATAGGTATGATTCATCTTCCT 2097
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 2041 GAGTCGCTTTGGGCGTGGAAGAGTGCAACATATCTATACATAGGTATGGTTCATCTTCCT 2100
Query 2098 TGCTGGCTCCTTTGCCTCTGTATCTTGTTTCATCCTTCTTAATTCTTATTTTACGCCCCA 2157
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 2101 TGCTGGCTCCTTTGCCTCTGCATCTTGTTTCATCCTTCTTAATTCTTATTTTACGTCCCA 2160
Query 2158 ATCCCCATACAA--A-GTT-ACTTTTTATTTCCTTTACTTCGGCGAAAGTTGTCCACAGT 2213
||| |||||||| | | | || || |||||||||||||||| || ||||||||||| |
Sbjct 2161 ATCTCCATACAAGGAAGGTCACAGTT-ATTTCCTTTACTTCGGTGACAGTTGTCCACACT 2219
Query 2214 CCAACACTCTTGAAATTTGTCATGTTTTCTAGTTGTCGCATGGTAATTAGCAATTAGAGG 2273
| ||| |||||||||| | |||||||||||||||||||||||||| |||||||
Sbjct 2220 -------TGTTGGAATTTGTCATATGTTCTAGTTGTCGCATGGTAATTAGCAGTTAGAGG 2272
Query 2274 TCTGATGTATCGTTAGAAAACTTTAAAA-GTCGTATGAATGAGTGAAGTTT-T-T----- 2325
|||||||||||||||||||||| |||| | || ||||||||||||||||| | |
Sbjct 2273 TCTGATGTATCGTTAGAAAACTA-AAAATG-CG-ATGAATGAGTGAAGTTTCTGTTTTTT 2329
Query 2326 GTATTGATTTTTAGTTTT 2343
||||||||||||||||||
Sbjct 2330 GTATTGATTTTTAGTTTT 2347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116314662765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5