BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488800
Length=333
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19151.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 455 1e-127
> AT5G19151.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:6428530-6429672
FORWARD LENGTH=392
Length=392
Score = 455 bits (246), Expect = 1e-127
Identities = 254/258 (98%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 1 AGAGAGGAAGAAGATGAAGAGGACGGTGATGGACAACGTGATTCGATCATCGGTGGTGGT 60
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 30 AGAGAGGAAGAAGATGAAGCGGACGGTGATGGACAACGCGATTCGATCATCGGTGGTGGT 89
Query 61 GTTGGGATCATTGGCCTTTGGTTACTTGTCACTGGAACTTGGTTACAAGCCTTTCCTTGA 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 90 GTTGGGATCATTGGCCTTTGGTTACTTGTCACTGGAGCTTGGTTACAAGCCTTTCCTTGA 149
Query 121 AAAGGCTGAACAATACGAAAGATCTCTTCAATCTTCTCAACAACATCAACAACAAGATGA 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 150 AAAGGCTGAACAATACGAAAGATCTCTTCAGTCTTCTCAACAACATCAACAACAAGATGA 209
Query 181 ACAAGAAGAAGCGAGGTGGGACAATAGCAATGTCGAGGGGTGGGAGGAGAAAAGGTAGTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 ACAAGAAGAAGCGAGGTGGGACAATAGCAATGTCGAGGGGTGGGAGGAGAAAAGGTAGTC 269
Query 241 TTATAATCGGTTTCAATA 258
||||||||||||||||||
Sbjct 270 TTATAATCGGTTTCAATA 287
Score = 119 bits (64), Expect = 2e-26
Identities = 72/76 (95%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 258 AGAAGAACCTTATCAAAATTTTCTTCTTAATCAACCTTAAGATCAATCTGTTAACTATCC 317
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 312 AGAAGAACCTTATCAAAATTTTCTTCTTAATCAACCGTAAGTTCAATCTGTTAACTATCA 371
Query 318 ACCATGGCCCGTTTTT 333
||||||||| ||||||
Sbjct 372 ACCATGGCCTGTTTTT 387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15532734441
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5