BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488803
Length=649
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19190.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1057 0.0
> AT5G19190.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G06070.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:6457260-6458031 FORWARD LENGTH=667
Length=667
Score = 1057 bits (572), Expect = 0.0
Identities = 631/657 (96%), Gaps = 14/657 (2%)
Strand=Plus/Plus
Query 1 CCACTTGAAGCAAACCCAATAA-AAAACACACACACAAGACTTGTCTTACAAAACAACCA 59
||||||||||||||||||| || |||| |||||||||||||||| |||||||||||| ||
Sbjct 1 CCACTTGAAGCAAACCCAA-AAGAAAA-ACACACACAAGACTTGGCTTACAAAACAAACA 58
Query 60 AGTC-TCAAGAAACTTGGAAAGCTAAGAGCTATGGCTATGGAGTTAGAGCTTGATGATGA 118
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 AGTCTTCAAGAAACTTGGAAAGCTAAGAGCTATGGCTATGGAGTTAGAGCTTGATGATGA 118
Query 119 TGTCTTCTTTGCAGACATAAGCAAACAGATCTCTCTTCTCATCATGGATGAAGATGAACA 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TGTCTTCTTTGCAGACATAAGCAAACAGATCTCTCTTCTCATCATGGATGAAGATGAACA 178
Query 179 CTTAAACCCTGTTTCTCTGTCTTCCTCCTCATCCTCTCTCTCATTCCAGGGTTTGTTCAG 238
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 179 CTTAAACCCTGTTTCTCTCTCTTCCTCCTCCTCCTCTCTCTCATTCCAGGGTTTGTTCAG 238
Query 239 AGGAGGTTACCAAACGGCTCCATATATGTATCAACAAGAACAGAGCAAAGGGACTGGTGT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AGGAGGTTACCAAACGGCTCCATATATGTATCAACAAGAACAGAGCAAAGGGACTGGTGT 298
Query 299 GTTCATCCCTAAATCTTCTCAGCCTAGAAGAAGACCTCATCATCATCAGAAGCAAGGTAG 358
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GTTCATCCCTAAATCGTCTCAGCCTAGAAGAAGACCTCATCATCATCAGAAGCAAGGTAG 358
Query 359 GTATAGTTCCTTCAACGCCAAGCAACAACACTCTCTTCATCAAAACAGACAAGAGTATCA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTATAGTTCCTTCAACGCCAAGCAACAACACTCTCTTCATCAAAACAGACAAGAGTATCA 418
Query 419 TCAGCAGAGCCATGAGAACTCAAGAAGTACTGTCACCACTCACAACAA---CAACAACAA 475
|| | | | |||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 419 GCAA-A-ATC-ATGAGAACTCAAGAAGTACTCTCACCACTCACAACAATAACAACAACAA 475
Query 476 GAGCAACATGAACA-C--TAATGTTCATGCTTCTATCCCAAGAAGAAGCTACAGAGATGC 532
|||||||||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 476 GAGCAACATGAACAGCACTAGTGTTCATGCTTCTATCCCAAGAAGAAGCTACAGAGATGC 535
Query 533 ATCATCTATCTACACCTGATTAATTTTAACAAATATTCTTCTGTGTGATCAATTCATATA 592
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 ATCATCTATCTACACTTGATTAATTTTAACAAATATTCTTCTGTGTGATCAATTCATATA 595
Query 593 ATTTTAAATTAGATGCATAAGATTGATTTGTTTGTAAATTCAGCGAACAATAAAAGG 649
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 596 ATTT-AAATTAGATGCATAAGATTTATTTGTTTGTAAATTCAGCGAACAATAAAAGG 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31346107728
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5