BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488806
Length=1558
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19210.2 | Symbols: | P-loop containing nucleoside triphosp... 2318 0.0
> AT5G19210.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:6461423-6463866
FORWARD LENGTH=1619
Length=1619
Score = 2318 bits (1255), Expect = 0.0
Identities = 1398/1466 (95%), Gaps = 13/1466 (1%)
Strand=Plus/Plus
Query 1 CGGAGGTGCTCAAACTCAAAAATGGCGTCCCAGCTTCTTAATGTTCCTCATCTCGCTTTC 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 CGGAGGTGCTCAAACTCAAAAATGGCGTCGCAGCTTCTTAATGTTCCTCATCTCGCTTTC 60
Query 61 TTCCCTAAAATCTCACCCTTTAATCCTCCCCTCTTCTCAACACTAAAGCCCAGTTTCTTC 120
||||||||||||||| | || || || |||||||||||||||||||||||||||||
Sbjct 61 TTCCCTAAAATCTCA-----T-ATGCTTCCGTCTTCTCAACACTAAAGCCCAGTTTCTTC 114
Query 121 CACTCTACTTCCACTAGCAGAGCTCTCAAAACCTCCTCCAACTCTCGGATTATCAACCTC 180
||||||||||||||||| |||||||||||| | ||| ||| || |||||||||||||||
Sbjct 115 CACTCTACTTCCACTAGAAGAGCTCTCAAATCATCCCCCAGTTCCCGGATTATCAACCTC 174
Query 181 CAAGCCGTCGCCGAAACTAGCTCTGAAATCGAAAGCAATAGTGCCACT--AAC-ACAGCT 237
||||||||||||||||||||||||||||||||||||||||||| |||| ||| || | |
Sbjct 175 CAAGCCGTCGCCGAAACTAGCTCTGAAATCGAAAGCAATAGTGTCACTGAAACAACTG-T 233
Query 238 G-CTTTGACTCTACGTAAAATCTGCCAAGGTTTTGTCCCCGAGCATATCTTGCACAGAAT 296
| | |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 234 GCCATTGACTCTACGTCAAATCTGCCAAGGTTTTGTGCCCGAGCATATCTTGCACAGAAT 293
Query 297 GGAGGAGATTGGGTTTATC-TCTCCCACGGATATTCAAAGAGAAGCTCTTCCTACTTTGT 355
|||||||||||| ||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 294 GGAGGAGATTGGATTTGTCTTC-CCCACGGATATTCAAAGAGAAGCTCTTCCTACTTTGT 352
Query 356 TCACAGGCCGTGATTGCATCCTCCATGCTCAAACAGGTTCAGGAAAGACGTTGACTTACC 415
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 353 TTACAGGCCGTGATTGCATCCTCCATGCTCAAACAGGTTCAGGAAAGACATTGACTTACC 412
Query 416 TGTTACTCATATTCTCTCTTATAAATCCTCAACGATCTTCTGTGCAAGCTGTTATTGTTG 475
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 413 TCTTACTCATATTCTCTCTTATAAACCCTCAACGATCTTCTGTGCAAGCTGTTATTGTTG 472
Query 476 TTCCCACTCGAGAGCTCGGTATGCAAGTTACAAAAGTTGCTCGAATGTTGGCTGCAAAAT 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 TTCCCACTCGAGAGCTCGGTATGCAAGTTACAAAAGTTGCTCGAATGTTGGCTGCAAAAT 532
Query 536 CGGAGATTGATGTGAAAGGGTGTACGGTAATGGCTCTTTTAGATGGAGGGACACTAAGAA 595
||||||||||||||||||| ||||| || |||||||| |||||||||||||| |||||||
Sbjct 533 CGGAGATTGATGTGAAAGGATGTACTGTGATGGCTCTCTTAGATGGAGGGACGCTAAGAA 592
Query 596 GGCACAAAAGCTGGCTAAAGGCTGAGCCACCAGCAATTTTGGTTGCTACGGTAGCAAGTT 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GGCACAAAAGCTGGCTAAAGGCTGAGCCACCAGCAATTTTGGTTGCTACGGTAGCAAGTT 652
Query 656 TGTGTCACATGCTAGAAAAACACATATTTAGACTTGACTCGGTGAAAGTTCTTGTTGTCG 715
||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||| |
Sbjct 653 TGTGTCACATGCTAGAAAAGCACATATTTAGAATTGACTCGGTGAGAGTTCTTGTTGTAG 712
Query 716 ATGAGGTTGATTTCTTATTCTACTCATCAAAACAAGTTGGTTCTGTGCGGAAGCTTTTGA 775
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 713 ATGAGGTTGATTTCTTATTCTACTCATCAAAGCAAGTTGGTTCTGTGCGGAAGCTTTTGA 772
Query 776 CATCATTTTCTTCATGCGATAAACGTCAGACAGTTTTTGCTAGTGCTTCCATACCCCAGC 835
|||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 773 CATCATTTTCTTCATGCGATAAACGTCAGACAGTTTTTGCAAGTGCTTCTATTCCCCAGC 832
Query 836 ATAAACATTTTGTGCATGACTGTATACAGCAAAAGTGGACAAAGAGGGATGTTGTCCATG 895
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 833 ATAAACATTTTGTGCATGACTGTATACAACAAAAGTGGACAAAGAGGGATGTTGTCCATG 892
Query 896 TTCATGTTAGTGCAATCATGCCCATGCCGTTGTGCCTTCTTCACAGATTTGTTATGTGTG 955
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 TTCATGTTAGCGCAATCATGCCCATGCCGTTGTGCCTTCTTCACAGATTTGTTATGTGTG 952
Query 956 AGAAGACAAACAAGCATCAAGTACTGCTTGCCTTGTTAGAGTCTGATGCACCTGAATCAG 1015
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 953 AGAAGACAAACAAGCATCAAGTACTACTTGCCTTGTTAGAGTCTGATGCACCTGAATCAG 1012
Query 1016 CTATCATATTTGTAGGGGAGCAGTCTGAGAAGTCAAAAAAGGCTGGAAATGATCCATCTA 1075
||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 CTATCATTTTTGTCGGCGAGCAGTCTGAGAAGTCAAAAAAGGCTGGAAATGATCCATCTA 1072
Query 1076 CAACTCTACTAATGGAATTCCTTAAAACTTCATATAAAGGCTCGTTGGAGATCCTCCTAC 1135
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1073 CAACTCTACTAATGGAATTCCTAAAAACTTCATATAAAGGCTCGCTGGAGATCCTCCTAC 1132
Query 1136 TAGAGGGGGACATGAATTTCAATTCACGAGCAGCTTCACTAACAGAAATCAGGCAAGGAG 1195
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 TAGAGGGGGATATGAATTTCAATTCACGAGCAGCTTCACTAACAGAAATCAGGCAAGGAG 1192
Query 1196 GAGGGTTTCTTCTTGTTTCTACTGATATTGCAGCAAGAGGGATTGATCTACCAGAAACAA 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 GAGGGTTTCTTCTTGTTTCTACTGATATTGCAGCAAGAGGGATTGATCTACCAGAAACAA 1252
Query 1256 CTCATATCTTCAACTTTGATCTCCCACAAACGGTTACAGATTATCTGCACCGAGCTGGAA 1315
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 CTCATATTTTTAACTTTGATCTCCCACAAACGGTTACAGATTATCTGCACCGAGCTGGAA 1312
Query 1316 GAGCTGGTCGGAAACCCTTTTCTGACAGGAAGTGCATTGTTGCTAATCTGATCACGGCAG 1375
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 1313 GAGCTGGTCGAAAACCCTTTTCTGACAGGAAGTGCATTGTCGCTAATCTGATCACCTCGG 1372
Query 1376 AGGAGAGATTTGTCTTGCAAAGATACGAAAATGAACTTATGTTCAGCTGCGAGGAACGGA 1435
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1373 AGGAAAGATTTGTCTTGCAAAGATACGAAAATGAACTTATGTTCAGCTGCGAGGAAATGA 1432
Query 1436 TGTTGTAGGTACAGTCTTAAATATCT 1461
|||||||||||||||||||| |||||
Sbjct 1433 TGTTGTAGGTACAGTCTTAACTATCT 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76907234940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5