BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488807
Length=1712
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19220.1 | Symbols: ADG2, APL1 | ADP glucose pyrophosphoryla... 2785 0.0
AT5G19221.1 | Symbols: | other RNA | chr5:6464234-6466349 FORW... 198 1e-49
> AT5G19220.1 | Symbols: ADG2, APL1 | ADP glucose pyrophosphorylase
large subunit 1 | chr5:6463824-6466831 REVERSE LENGTH=1732
Length=1732
Score = 2785 bits (1508), Expect = 0.0
Identities = 1652/1721 (96%), Gaps = 12/1721 (1%)
Strand=Plus/Plus
Query 1 TCTCTTTTATCTTCCCCTCTCTTCAAACCCTTCAAGAGACAATCTTTCCTGCGAAAATGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTTTTATCTTCCCCTCTCTTCAAACCCTTCAAGAGACAATCTTTCCTGCGAAAATGG 60
Query 61 TGGTCTCTGCTGACTGCAGAATCTCCTTCTCTGCCCCGAGCTGCATACGTAGTAGCTCCA 120
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 61 TGGTCTCTGCTGACTGCAGAATCTCCCTCTCTGCCCCTAGCTGCATACGTAGTAGCTCCA 120
Query 121 CGGGCTTGACTAGGCACATTAAGCTTGGCAGCTTCTGCAATGGTGAGCTCATGGGGAAGA 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGGGATTGACTAGGCACATTAAGCTTGGCAGCTTCTGCAATGGTGAGCTCATGGGGAAGA 180
Query 181 AGCTCAACTTGGCTCAGCTTCCAAACATTCGTCTTCGATCTTCTACTAACTTCCCTCAGA 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 AGCTCAACTTGTCTCAGCTTCCAAACATTCGTCTTCGATCTTCTACTAACTTCTCTCAGA 240
Query 241 AGAAAATCTCAATGTCTCTAAATAGTGTAGCTGGAGAGAGTAAGGTACAAGAACTTGAGA 300
||| ||| | |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 AGAGAATTTTAATGTCTCTAAATAGTGTAGCTGGGGAGAGTAAGGTACAAGAACTTGAGA 300
Query 301 CTGAGAAAAGGGATTCAAGGACAGTTGCTTCCATTATTCTTGGAGGTGGAGCAGGAACTC 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTGAGAAAAGGGATCCAAGGACAGTTGCTTCCATTATTCTTGGAGGTGGAGCAGGAACTC 360
Query 361 GTCTCTTTCCTCTCACGAAACGCCGCGCCAAGCCTGCTGTTCCTATCGGGGGAGCCTATA 420
| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 GACTCTTTCCTCTCACAAAACGCCGCGCCAAGCCTGCCGTTCCTATCGGGGGAGCCTATA 420
Query 421 GGTTGATAGATGTACCAATGAGCAATTGTATTAACAGCGGAATCAACAAAGTCTACATAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGTTGATAGATGTACCAATGAGCAATTGTATTAACAGCGGAATCAACAAAGTCTACATAC 480
Query 481 TCACACAATATAACTCAGCATCATTGAACAGGCATTTAGCCCGTGCGTACAACTCCAATG 540
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 481 TCACACAATATAACTCAGCATCATTGAACAGGCATTTAGCCCGTGCTTACAACTCCAATG 540
Query 541 GAGTTGGCTTTGGAGATGGCTATGTTGAGGTTCTTGCGGCCACTCAAACGCCAGGAGAAT 600
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GACTTGGCTTTGGAGATGGCTATGTTGAGGTTCTTGCGGCCACTCAAACGCCAGGAGAAT 600
Query 601 CTGGTAACAGGTGGTTCCAAGGTACAGCAGATGCAGTTCGGCAATTCCATTGGCTTTTCG 660
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 601 CTGGTAAAAGGTGGTTCCAAGGTACAGCAGATGCGGTTCGGCAATTCCATTGGCTTTTCG 660
Query 661 AGGATGCAAGAAGCAAGGACATAGAGGATGTATTGATCCTTTCTGGAGATCACCTCTACA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGGATGCAAGAAGCAAGGACATAGAGGATGTATTGATCCTTTCTGGAGATCACCTCTACA 720
Query 721 GGATGGATTATATGGATTTTGTACAGGATCATCGGCAGAGTGGCGCAGATATAAGCATTT 780
|||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 721 GGATGGATTACATGGATTTTATACAGGATCATCGGCAGAGTGGCGCGGATATAAGCATTT 780
Query 781 CCTGCATACCAATAGATGACAGACGTGCCTCAGATTTTGGGCTTATGAAGATAGATGACA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CCTGCATACCAATAGATGACAGACGTGCCTCAGATTTTGGGCTTATGAAGATAGATGACA 840
Query 841 AAGGAAGAGTTATCTCTTTCAGTGAAAAACCTAAAGGAGACGAACTGAAAGCAATGGCAG 900
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 841 AAGGAAGAGTTATCTCATTCAGTGAAAAACCTAAAGGAGACGACCTGAAAGCAATGGCAG 900
Query 901 TAGACACAACTATTTTAGGACTTTCCAAGGAGGAAGCTGAAAAGAAACCATACATAGCGT 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 901 TAGACACAACTATTTTAGGACTTTCCAAGGAGGAAGCTGAAAAGAAACCATACATAGCTT 960
Query 961 CAATGGGAGTTTATGTTTTCAAGAAAGAAATACTGTTGAATCTCTTGAGATGGCGTTTCC 1020
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 961 CAATGGGAGTTTATGTTTTCAAAAAAGAAATACTGTTAAATCTCTTGAGATGGCGTTTCC 1020
Query 1021 CCACAGCAAACGACTTTGGTTCAGAGATTATACCCTTCTCAGCTAAAGAATTCTATGTGA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CCACAGCAAACGACTTTGGTTCAGAGATTATACCCTTCTCAGCTAAAGAATTCTATGTGA 1080
Query 1081 ATGCTTATCTCTTTAATGACTACTGGGAAGATATAGGAACGATAAGATCTTTCTTTGAGG 1140
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1081 ATGCTTATCTCTTTAATGACTACTGGGAAGATATAGGAACAATAAGATCTTTCTTCGAGG 1140
Query 1141 CAAACCTCGCCCTCACTGAGCATCCCGGGGCATTTAGTTTCTACGACGCAGCGAAACCAA 1200
| || || || |||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 1141 CGAATCTTGCACTCACTGAGCATCCTGGGGCATTTAGTTTCTACGACGCGGCAAAACCAA 1200
Query 1201 TTTATACATCAAGGAGAAACCTGCCACCATCAAAAATAGACAACTCTAAGCTTGTTGATT 1260
| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1201 TATATACATCAAGGAGAAACCTGCCACCATCAAAAATAGACAACTCTAAGCTCATCGATT 1260
Query 1261 CGATCATTTCTCATGGAAGCTTCTTAACCAACTGCTTGATTGAGCACAGCATTGTAGGGA 1320
| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1261 CAATCATTTCTCATGGAAGCTTCTTAACCAACTGCTTGATTGAGCATAGCATTGT-GGGA 1319
Query 1321 -TTAGATCAAGAGTAGGCAGTAATGTTCAGTTGAAGGACACTGTGATGCTTGGGGCAGAT 1379
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 ATTAGATCAAGAGTAGGCAGTAATGTTCAGTTGAAGGACACTGTGATGCTTGGGGCAGAT 1379
Query 1380 TACTACGAAACTGAAGCAGAAGTTGCATCACTACTTGCTGAGGGAAAAGTTCCCATTGGA 1439
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1380 TACTACGAAACTGAAGCAGAAGTTGCAGCACTACTTGCTGAGGGAAACGTTCCCATTGGA 1439
Query 1440 ATAGGAGAGAACACAAAAATTAAAGAATGCATAATAGACAAGAATGCTAGAGTCGGGAAG 1499
||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||
Sbjct 1440 ATAGGAGAGAACACAAAAATTCAAGAATGCATAATAGACAAGAATGCTAGAGTTGGAAAG 1499
Query 1500 AATGTAATAATCGCAAACTCGGAGGGAATACAAGAAGCAGATAGGTCATCCGATGGATTT 1559
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 AATGTAATCATCGCAAACTCGGAGGGAATACAAGAAGCAGATAGGTCATCCGATGGATTT 1559
Query 1560 TACATCAGATCTGGCATTACAGTAATCTTGAAGAATTCAGTAATTAAAGATGGAATTGTG 1619
|||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||
Sbjct 1560 TACATCAGATCTGGCATTACTGTAATCTTGAAGAACTCAGTAATTAAAGATGGAGTTGTG 1619
Query 1620 ATATGATACTTTTAAGTTTTGATTG------C-GAGAACTAAGAA-TGCAGAGTATAAAA 1671
|||||||||||||||| | | |||| | ||||||||| || ||||||| ||||||
Sbjct 1620 ATATGATACTTTTAAGATCTAATTGTAAGAACTGAGAACTAAAAAATGCAGAGCATAAAA 1679
Query 1672 GTCAAAAACTAAATTATTAAAGAAATTTATTTGATAATGAT 1712
||||| || ||||||| |||||||||||||||||| ||||
Sbjct 1680 GTCAACAA-TAAATTAC-AAAGAAATTTATTTGATAGTGAT 1718
> AT5G19221.1 | Symbols: | other RNA | chr5:6464234-6466349 FORWARD
LENGTH=844
Length=844
Score = 198 bits (107), Expect = 1e-49
Identities = 171/198 (86%), Gaps = 20/198 (10%)
Strand=Plus/Minus
Query 744 CAGGATCATCGGCAGAGTGGCGCAGATATAAGCATTTCCTGCATACCAATAGATGACAGA 803
||||||||||||||||||||||| |||||||||| | | | | || | | |||
Sbjct 288 CAGGATCATCGGCAGAGTGGCGCGGATATAAGCA--T--T---T--C-AT-G--G-TAGA 243
Query 804 CGTGCCTCAGATTTTGGGCTTATGAAGATAGATGACAAAGGAAGAGTTATCTCTTTCAGT 863
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 242 CGTGCCTCAGATTTTGGGCTTATGAAGATAGATGACAAAGGAAGAGTTATCTCATTCAGT 183
Query 864 GAAAAACCTAAAGGAGACGAACT-GAAAGCAA--T--GGCAGTAGACACAACTATTTTAG 918
|||||||||||||||||||| || | ||| | |||||||||||||||||||||||
Sbjct 182 GAAAAACCTAAAGGAGACGACCTCGGG-GCATCCTTAGGCAGTAGACACAACTATTTTAG 124
Query 919 GACTTTCCAAGGAGGAAG 936
||||||||||||||||||
Sbjct 123 GACTTTCCAAGGAGGAAG 106
Score = 167 bits (90), Expect = 4e-40
Identities = 94/96 (98%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 568 AGGTTCTTGCGGCCACTCAAACGCCAGGAGAATCTGGTAACAGGTGGTTCCAAGGTACAG 627
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 615 AGGTTCTTGCGGCCACTCAAACGCCAGGAGAATCTGGTAAAAGGTGGTTCCAAGGTACAG 556
Query 628 CAGATGCAGTTCGGCAATTCCATTGGCTTTTCGAGG 663
||||||| ||||||||||||||||||||||||||||
Sbjct 555 CAGATGCGGTTCGGCAATTCCATTGGCTTTTCGAGG 520
Score = 156 bits (84), Expect = 8e-37
Identities = 88/90 (98%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 483 ACACAATATAACTCAGCATCATTGAACAGGCATTTAGCCCGTGCGTACAACTCCAATGGA 542
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 779 ACACAATATAACTCAGCATCATTGAACAGGCATTTAGCCCGTGCTTACAACTCCAATGGA 720
Query 543 GTTGGCTTTGGAGATGGCTATGTTGAGGTT 572
|||||||||||||||||||||||||||||
Sbjct 719 CTTGGCTTTGGAGATGGCTATGTTGAGGTT 690
Score = 152 bits (82), Expect = 1e-35
Identities = 91/95 (96%), Gaps = 1/95 (1%)
Strand=Plus/Minus
Query 654 CTTTTC-GAGGATGCAAGAAGCAAGGACATAGAGGATGTATTGATCCTTTCTGGAGATCA 712
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 CTTTTCATAGGATGCAAGAAGCAAGGACATAGAGGATGTATTGATCCTTTCTGGAGATCA 403
Query 713 CCTCTACAGGATGGATTATATGGATTTTGTACAGG 747
|||||||||||||||||| ||||||||| ||||||
Sbjct 402 CCTCTACAGGATGGATTACATGGATTTTATACAGG 368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84638118870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5