BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488810 Length=1001 Score E Sequences producing significant alignments: (Bits) Value AT5G19260.1 | Symbols: | Protein of unknown function (DUF3049)... 1478 0.0 > AT5G19260.1 | Symbols: | Protein of unknown function (DUF3049) | chr5:6479400-6480446 REVERSE LENGTH=1047 Length=1047 Score = 1478 bits (800), Expect = 0.0 Identities = 945/1012 (93%), Gaps = 21/1012 (2%) Strand=Plus/Plus Query 1 AAAAACATCTCTCTGCTTCTTTAGTTTCATATCT--CACAAGTCTTTGctctctctctct 58 ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| Sbjct 1 AAAAACATCTCTCTGCTTCTTTAGTTTCACATCTCACACAAGTCTTTG----CTCTCTCT 56 Query 59 TAACAGAttttt-ttttATCCTCTTTAAACTATGGGAACTGTTGTGTATCAACAAGGGTT 117 |||||| ||||| || |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 57 TAACAG-TTTTTCTTCTATCATCTTTAAACTATGGGAACTGTTGTGTATCAACAAGGGTT 115 Query 118 TCAGTCTCAGCTTAATGAGCCTAGGGCTTTAAGGCTTAGGCTATCTTCACCAAATCCTCA 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 116 TCAGTCTCAGCTTAATGAGCCTAGGGCTTTAAGGCTTAGGCTATCTTCACCAAATCCTCA 175 Query 178 CTTCTCTCAACCCTTTGGTCTAGCTCTCAAGTCTCATTTACTTGACTCCTCTAATGCAGA 237 ||| |||||||| |||||| |||||||||| ||||||||||||||||||||| ||||||| Sbjct 176 CTTTTCTCAACCATTTGGTTTAGCTCTCAAATCTCATTTACTTGACTCCTCTCATGCAGA 235 Query 238 GGACACCCGTATCCGTAGCGATGACAAATCTGCTGCTTCCTCGGGCCCTGACTCGAGTGG 297 ||||||||| | ||||| |||||||||| ||||||||||| ||| | ||||||||||||| Sbjct 236 GGACACCCGAAACCGTAACGATGACAAAGCTGCTGCTTCCCCGGTCTCTGACTCGAGTGG 295 Query 298 CTGGAGCTTTCTCCAGTCCCTATCCTCTGGCTCCTCCTCCTCATCCACAAAGACGAC-A- 355 |||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| | Sbjct 296 CTGGAGCTCTCTCCAGTCCCTATCCTCTGGCTCCTCCTCCTC--C-ACAAAGACGACGAC 352 Query 356 A-GCTCTGAGAAAGAGA--AG--ACTTATGTTCAACGTCCGTCCTCTTGTAGAGCTCTAA 410 | ||||||||||||||| || ||| |||||||||||||||| |||||||||||||||| Sbjct 353 AAGCTCTGAGAAAGAGAGTAGTTACT-ATGTTCAACGTCCGTCTTCTTGTAGAGCTCTAA 411 Query 411 GCGACCAGAGCTTAGCATTGTGCACTGAGAATCTCGGAAGCGAATCTGGTTCTGATGTTA 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 GCGACCAGAGCTTAGCATTGTGCACTGAGAATCTCGGAAGCGAATCTGGTTCTGATGTTA 471 Query 471 CAGACATCGATGATTTGTTCTCGCTTGACGTGCAGACCAAGAATCTCGGGGAAACAACAA 530 |||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 472 CAGATATTGATGAGTTGTTCTCGCTTGACGTGCAAACCAAGAATCTCGGGGAAACAACAA 531 Query 531 CGGAGACAAGAACGTTAAAAAGTAGGAAAAGAAATTTGAGCCCTAGTGATCTCCCACCTC 590 ||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||| Sbjct 532 CGGAGACAAGAACGTTAAAAAGTAGGAAAAGGAGTGTGAGCCCTAGTGATCTCCCACCTC 591 Query 591 CTTTGACCACTATGAGAGGGTTTCAATGCATTCAAATGAGACCACGCCGTGAAGACGGAA 650 ||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||| Sbjct 592 CTTTGACCACTATGAGAGGATTTCAATGCATTCAAATGAGACCACACCGTGAAAACGGAA 651 Query 651 GATTGGTCATGACCGCCACAAAAGCACCGCCTCGTAACGGGTGCTTTCAAGCTGACCGTA 710 |||||||||||||||||||||| || || ||||||||||| ||||||||||||||||||| Sbjct 652 GATTGGTCATGACCGCCACAAACGCGCCTCCTCGTAACGGATGCTTTCAAGCTGACCGTA 711 Query 711 GCAATGGTCGTCTCCGTCTTTCTATCTTGAAAGACTC-AGATGAGTTTGTAGAGAACGAA 769 ||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||| Sbjct 712 GCAATGGTCGTCTCCGTCTCTCTATCTTGAAAGACTCCA-ATGAGTTTGTAGAGAACGAA 770 Query 770 GAAGAGACGATTGAGCCTGAAGAAACCGAAGAATACgaggaggaggaggaggaagaggaa 829 |||||||| ||||||||||||||||||||||||||||||||||||||||| || || ||| Sbjct 771 GAAGAGACTATTGAGCCTGAAGAAACCGAAGAATACGAGGAGGAGGAGGAAGAGGAAGAA 830 Query 830 gaagaggaTGATGATGAAGTTATGGGCATTGAGAATGTTCAAATGTCAAGAAGATGTGTT 889 || || ||||| |||||||| ||||||||||||||||||||| | ||||||||||||||| Sbjct 831 GATGAAGATGAAGATGAAGTGATGGGCATTGAGAATGTTCAAGTATCAAGAAGATGTGTT 890 Query 890 CAAGGCGACCGGGAAAACAGAGGATTGCTAAATTGGGAATCTTTCTGCGTTGCTACTTCC 949 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 891 CAAGGCGATCGGGAAAACAGGGGATTGCTAAATTGGGAATCTTTCTGCGTTGCTACTTCC 950 Query 950 TAAAAGAGAGAAACTTCTTAATCTGCTCTGTATTTACAATTTCACAATTTTT 1001 |||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 951 TAAAAGAGAGAAACTTCTTATTTTGCTCTGTATTTACAATTTCACAATTTTT 1002 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49028527472 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5