BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488810
Length=1001
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19260.1 | Symbols: | Protein of unknown function (DUF3049)... 1478 0.0
> AT5G19260.1 | Symbols: | Protein of unknown function (DUF3049)
| chr5:6479400-6480446 REVERSE LENGTH=1047
Length=1047
Score = 1478 bits (800), Expect = 0.0
Identities = 945/1012 (93%), Gaps = 21/1012 (2%)
Strand=Plus/Plus
Query 1 AAAAACATCTCTCTGCTTCTTTAGTTTCATATCT--CACAAGTCTTTGctctctctctct 58
||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct 1 AAAAACATCTCTCTGCTTCTTTAGTTTCACATCTCACACAAGTCTTTG----CTCTCTCT 56
Query 59 TAACAGAttttt-ttttATCCTCTTTAAACTATGGGAACTGTTGTGTATCAACAAGGGTT 117
|||||| ||||| || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 57 TAACAG-TTTTTCTTCTATCATCTTTAAACTATGGGAACTGTTGTGTATCAACAAGGGTT 115
Query 118 TCAGTCTCAGCTTAATGAGCCTAGGGCTTTAAGGCTTAGGCTATCTTCACCAAATCCTCA 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 TCAGTCTCAGCTTAATGAGCCTAGGGCTTTAAGGCTTAGGCTATCTTCACCAAATCCTCA 175
Query 178 CTTCTCTCAACCCTTTGGTCTAGCTCTCAAGTCTCATTTACTTGACTCCTCTAATGCAGA 237
||| |||||||| |||||| |||||||||| ||||||||||||||||||||| |||||||
Sbjct 176 CTTTTCTCAACCATTTGGTTTAGCTCTCAAATCTCATTTACTTGACTCCTCTCATGCAGA 235
Query 238 GGACACCCGTATCCGTAGCGATGACAAATCTGCTGCTTCCTCGGGCCCTGACTCGAGTGG 297
||||||||| | ||||| |||||||||| ||||||||||| ||| | |||||||||||||
Sbjct 236 GGACACCCGAAACCGTAACGATGACAAAGCTGCTGCTTCCCCGGTCTCTGACTCGAGTGG 295
Query 298 CTGGAGCTTTCTCCAGTCCCTATCCTCTGGCTCCTCCTCCTCATCCACAAAGACGAC-A- 355
|||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 296 CTGGAGCTCTCTCCAGTCCCTATCCTCTGGCTCCTCCTCCTC--C-ACAAAGACGACGAC 352
Query 356 A-GCTCTGAGAAAGAGA--AG--ACTTATGTTCAACGTCCGTCCTCTTGTAGAGCTCTAA 410
| ||||||||||||||| || ||| |||||||||||||||| ||||||||||||||||
Sbjct 353 AAGCTCTGAGAAAGAGAGTAGTTACT-ATGTTCAACGTCCGTCTTCTTGTAGAGCTCTAA 411
Query 411 GCGACCAGAGCTTAGCATTGTGCACTGAGAATCTCGGAAGCGAATCTGGTTCTGATGTTA 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 GCGACCAGAGCTTAGCATTGTGCACTGAGAATCTCGGAAGCGAATCTGGTTCTGATGTTA 471
Query 471 CAGACATCGATGATTTGTTCTCGCTTGACGTGCAGACCAAGAATCTCGGGGAAACAACAA 530
|||| || ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 472 CAGATATTGATGAGTTGTTCTCGCTTGACGTGCAAACCAAGAATCTCGGGGAAACAACAA 531
Query 531 CGGAGACAAGAACGTTAAAAAGTAGGAAAAGAAATTTGAGCCCTAGTGATCTCCCACCTC 590
||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 532 CGGAGACAAGAACGTTAAAAAGTAGGAAAAGGAGTGTGAGCCCTAGTGATCTCCCACCTC 591
Query 591 CTTTGACCACTATGAGAGGGTTTCAATGCATTCAAATGAGACCACGCCGTGAAGACGGAA 650
||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||
Sbjct 592 CTTTGACCACTATGAGAGGATTTCAATGCATTCAAATGAGACCACACCGTGAAAACGGAA 651
Query 651 GATTGGTCATGACCGCCACAAAAGCACCGCCTCGTAACGGGTGCTTTCAAGCTGACCGTA 710
|||||||||||||||||||||| || || ||||||||||| |||||||||||||||||||
Sbjct 652 GATTGGTCATGACCGCCACAAACGCGCCTCCTCGTAACGGATGCTTTCAAGCTGACCGTA 711
Query 711 GCAATGGTCGTCTCCGTCTTTCTATCTTGAAAGACTC-AGATGAGTTTGTAGAGAACGAA 769
||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||
Sbjct 712 GCAATGGTCGTCTCCGTCTCTCTATCTTGAAAGACTCCA-ATGAGTTTGTAGAGAACGAA 770
Query 770 GAAGAGACGATTGAGCCTGAAGAAACCGAAGAATACgaggaggaggaggaggaagaggaa 829
|||||||| ||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 771 GAAGAGACTATTGAGCCTGAAGAAACCGAAGAATACGAGGAGGAGGAGGAAGAGGAAGAA 830
Query 830 gaagaggaTGATGATGAAGTTATGGGCATTGAGAATGTTCAAATGTCAAGAAGATGTGTT 889
|| || ||||| |||||||| ||||||||||||||||||||| | |||||||||||||||
Sbjct 831 GATGAAGATGAAGATGAAGTGATGGGCATTGAGAATGTTCAAGTATCAAGAAGATGTGTT 890
Query 890 CAAGGCGACCGGGAAAACAGAGGATTGCTAAATTGGGAATCTTTCTGCGTTGCTACTTCC 949
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 891 CAAGGCGATCGGGAAAACAGGGGATTGCTAAATTGGGAATCTTTCTGCGTTGCTACTTCC 950
Query 950 TAAAAGAGAGAAACTTCTTAATCTGCTCTGTATTTACAATTTCACAATTTTT 1001
|||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 951 TAAAAGAGAGAAACTTCTTATTTTGCTCTGTATTTACAATTTCACAATTTTT 1002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49028527472
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5