BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488811
Length=2056
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19280.2 | Symbols: KAPP, RAG1 | kinase associated protein p... 2276 0.0
> AT5G19280.2 | Symbols: KAPP, RAG1 | kinase associated protein
phosphatase | chr5:6488319-6493439 FORWARD LENGTH=2164
Length=2164
Score = 2276 bits (1232), Expect = 0.0
Identities = 1377/1444 (95%), Gaps = 22/1444 (2%)
Strand=Plus/Plus
Query 1 GTGAAATTTCGATAAGAGAGACCaaaaaaaaaaaa-aaaGAAGGTAAGAAAAATTCAAAG 59
|||||| | |||||||||| | |||||||||||| | ||||||||||||||||||||||
Sbjct 1 GTGAAAATACGATAAGAGA-AAGAAAAAAAAAAAACAGAGAAGGTAAGAAAAATTCAAAG 59
Query 60 CGAGGTTCTCGGGAACCAATCTGGAAAGAGGAGGGGTGCAGAGAGA-AGCGA-AGACGA- 116
|||||||||||||||||||||||||| ||||||||||||||||||| || || ||| ||
Sbjct 60 CGAGGTTCTCGGGAACCAATCTGGAAGGAGGAGGGGTGCAGAGAGAGAGAGAGAGA-GAG 118
Query 117 TG--GCG-ATA-G-T--AGA-GAT---GATGAACATTATTGGGATATTCATGGTGCTTAT 165
| ||| | | | | || ||| |||||||||||||||| |||||||||| |||||
Sbjct 119 AGAAGCGAAGACGATGGCGATGATAGGGATGAACATTATTGGGCTATTCATGGTTCTTAT 178
Query 166 GTTGCTTCTCATCTCCCTCATCATCCTTTTCGCCTGCAAGCCATGGCGATACTTTTCTCG 225
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 179 GTTGCTTCTCATCTCCCTCATCATCCTTTTCGCCTGCAAGCCATGGCGATATTTTTCTCG 238
Query 226 TTTCCGA---TCCTCTCGTTTTTCTTCTACCTTCAAGGTGGGGGATTTGCAGAGACCACT 282
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTTCCGATCCTCCTCTCGTTTTTCTTCTACCTTCAAGGTGGGGGATTTGCAGAGACCACT 298
Query 283 TATATCTGATGATGGAAATTTGATCCAAGGCCAAACCAGTGAGGTAACAAGGGAATATGA 342
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 299 TATTTCTGATGATGGAAATTTGATCCAAGGACAAACCAGTGAGGTAACAAGGGAATATGA 358
Query 343 TTTAGAGGGAGCTTGCTACCAAAATGATGGACTTTTGCATTCATCTCTGACTGAGGGACG 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TTTAGAGGGAGCTTGCTACCAAAATGATGGACTTTTGCATTCATCTCTGACTGAGGGACG 418
Query 403 GTTTTACAAACAAAGGCTTCCTTCATCATCTCCCCATTTCACCCAAGGTGAAAGCTTCGT 462
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||
Sbjct 419 GTTTTACAAACAAAGGCTTCCTTCGTCATCTCCCCATTTCTCCCAAGGTGAAAGCTTTGT 478
Query 463 TCTAGAAGTAATTTCTGAACCTTCTGACAATGCTTTGGTGGGCCAAACGCTTAAACTTCC 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TCTAGAAGTAATTTCTGAACCTTCTGACAATGCTTTGGTGGGCCAAACGCTTAAACTTCC 538
Query 523 AGCTGAGAAAGGTTCCTTGACAGAAGTGCAATCATATGACTGGCAGAATAACAGAAATGA 582
|||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 539 AGCTGAAAAAGGTTCCTTGGCAGAAGTGCAAACATATGACTGGCAGAATAACAGAAATGA 598
Query 583 AAACTTGCAATATGATCTGGAAAAGGATAGAGTTATTAATCTTTCTCCG-GGACTCGTGG 641
||||||||||||| |||||||||||||| || ||||||||||||||||| || |||||||
Sbjct 599 AAACTTGCAATATAATCTGGAAAAGGATCGACTTATTAATCTTTCTCCGAGG-CTCGTGG 657
Query 642 AAGATCAAAGAAGTTGGCTGTCCCTGGAAGTCATTGCGGGTCCTGCCATTGGGCTTCAAC 701
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 658 AAGATCAAAGAAGTTGGCTGTTCCTGGAAGTCATCGCGGGTCCTGCCATTGGGCTTCAAC 717
Query 702 ATGTTGTGAACTCTACAAGTTCCTCCAAGCTGCCAGTGAAACTTGGAAGGGTTTCTCCTT 761
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ATGCTGTGAACTCCACAAGTTCCTCCAAGCTGCCAGTGAAACTTGGAAGGGTTTCTCCTT 777
Query 762 CTGATTTGGCATTGAAGGACTCAGAAGTCTCAGGAAAACATGCACAGATAACATGGAACT 821
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 778 CTGATTTGGCATTGAAGGACTCAGAAGTCTCTGGGAAACATGCACAGATAACATGGAACT 837
Query 822 CTACTAAATTGAAATGGGAGCTGGTAGATATGGGTAGCCTAAATGGAACTCTCGTAAACT 881
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CTACTAAATTTAAATGGGAGCTGGTAGATATGGGTAGCCTAAATGGAACTCTCGTAAACT 897
Query 882 CTCAGTCAGTAAGTCATCCTGATTTAGGCAGCCGGAAGTGGGGTAACCCTGTCGAGCTTG 941
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CTCATTCAATAAGTCATCCTGATTTAGGCAGCCGGAAGTGGGGTAACCCTGTCGAGCTTG 957
Query 942 CAAGTGATGATATAATAACTTTGGGAACAACTACAAAGGTCTATGTCCGTATCTCATCTC 1001
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 958 CAAGTGATGATATAATAACTTTGGGAACAACAACAAAGGTCTATGTCCGTATCTCCTCTC 1017
Query 1002 AGAATGAGTTTCAGATACCCTTCAAAATTGGCGTGGCCTCAGATCCCATGGCTGTACGTC 1061
||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct 1018 AGAATGAGTTTCAGATACCCTTCAAAATTGGTGTGGCCTCAGATCCCATGGCTATGCGTC 1077
Query 1062 GAGGAGGCAAGAAACTTCCGATGGAAGATATTTGTCATTACAAGTGGCCGCTTCCTGGGG 1121
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1078 GAGGAGGCAGGAAACTTCCGATGGAAGATGTTTGTCATTACAAGTGGCCGCTTCCTGGGG 1137
Query 1122 CTAATAAGTTTGGACTGTTTTGTGTTTGTGATGGACATGGGGGATCAGGGGCTGCTGAAT 1181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1138 CTAATAAGTTTGGACTGTTTTGTGTTTGTGATGGACATGGGGGATCAGGGGCTGCTCAAT 1197
Query 1182 CCGCAATCAAAATTATTCCGGAGGTTCTAGGGAATATTTTATCAGACTCGCTGAGGAAGG 1241
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1198 CCGCAATCAAAATTATTCCGGAGGTTCTAGCGAATATTTTATCAGACTCGCTGAGGAAGG 1257
Query 1242 AGAAAGTGTTATCAAAAAGGGATGCTTCGGACGTCCTTAGGGACATGTTTGCCAAAACAG 1301
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1258 AGAAAGTGTTATCAAAAAGGGATGCTTCGGACGTCCTTAGGGACATGTTTGCTAAAACAG 1317
Query 1302 AAGCTCGCCTCGATGAACACCTATATGAGGGTTGTACAGCTACTGTTCTCTTGGTTTGGA 1361
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AAGCTCGCCTCGAAGAACACCAATATGAGGGTTGTACAGCTACTGTTCTCTTGGTTTGGA 1377
Query 1362 AAGACAATGAAGAAAACTTCTTCGCACAATGTGCCAATCTTGGGGATTCAGCATGTGTTA 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 AAGACAATGAAGAAAACTTCTTCGCACAATGTGCCAATCTTGGGGATTCAGCATGTGTTA 1437
Query 1422 TCCA 1425
||||
Sbjct 1438 TCCA 1441
Score = 961 bits (520), Expect = 0.0
Identities = 598/635 (94%), Gaps = 7/635 (1%)
Strand=Plus/Plus
Query 1425 ATCTTGATGGCAGATATATACAAATGACTGAAGATCATCGAGTGGTGAGCTTGAGCGAGA 1484
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1471 ATCTTGGTGGCAGATATATACAAATGACTGAAGATCATCGAGTGGTTAGCTTGAGCGAGA 1530
Query 1485 GAAAACGATTCCAAGAAGCCGGAGTACCCTTGAGAGATGGAGAGACTCGGATCTTCGGTA 1544
||||||||||||||||||| ||| || ||||||||||||||||||||||| | || ||||
Sbjct 1531 GAAAACGATTCCAAGAAGCAGGACTAGCCTTGAGAGATGGAGAGACTCGGCTTTTTGGTA 1590
Query 1545 TAAACCTTGCGAGGATGCTTGGAGACAAATTTCCAAAGCAGCAAGACAGCCGTTTCAGTG 1604
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1591 TAAACCTTGCGAGGATGCTTGGAGACAAGTTTCCAAAGCAACAAGACAGCCGTTTCAGTG 1650
Query 1605 CAGAGCCATATATAAGTGAGCCTTTGCGTATCAATCAATCTAGTAAAGATGTCTTTGCTG 1664
|||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||
Sbjct 1651 CAGAGCCATATATAAGTGAGCCTTTGCGTATCGATCAATCTAGTAAAGACGTATTTGCTG 1710
Query 1665 TATTGGCCAGTGACGGGTTATGGGACGTGGTAAGTCCGAAGAAAGCTGTGCAGCTGGTAC 1724
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1711 TATTGGCTAGTGACGGGTTATGGGACGTGGTAAGTCCGAAGAAAGCTGTGCAGCTTGTAC 1770
Query 1725 TTCAGATGAGAGACAAAGAGAGAGGGACAGAGAATAGTGCGGAGAAGATAGCAAACGGTC 1784
||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1771 TTCAGATGAGAGATAAAGAGAGAGGGAGAGAGAGTAGTGCGGAGAAGATAGCAAACGGTC 1830
Query 1785 TGCTGAATGAAGCTAGAGCGATGCGTACGAAGGACAACACCTCCATTGTTTACTTAGGTT 1844
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||
Sbjct 1831 TGCTGAATGAAGCTAGAGCGATGCGTACAAAGGACAACACCTCCATTATTTACTTAGATT 1890
Query 1845 TCGATACTTCCCTGTAATGTTAGGAAACATCTTTTTAAGATATTTGGGAAGTGTCTTTCT 1904
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1891 TCGATACTTCCCTGTAATGTTAGGAAACATCTTTT-AAGATATTTGGGAAGTGTCTTTCT 1949
Query 1905 TTTGTGTACTATCTTTTCATGTATTAGTATTATTGTTAGGGTATAAGAGAGACaaaaaaa 1964
||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1950 TTTGTGTACCATCTTTTTATGTATTAGTATTTTTGTTAGGGTATAAGAGAGACAAAAAAA 2009
Query 1965 aaaCCTCAGGTGCAGAGCTGTAGGATGGTTCGTCT-GGTGAGCGACATTGGTTTCATC-T 2022
|||||| ||||||| | |||||||| |||||| ||||||||||||||||||||| |
Sbjct 2010 ---CCTCAGATGCAGAGATTTAGGATGGATCGTCTTGGTGAGCGACATTGGTTTCATTAT 2066
Query 2023 CTTG-CTTATATAATTAATAATATTATCAGTTAAA 2056
||| ||||||||||||||||||||||||||||||
Sbjct 2067 CTTTACTTATATAATTAATAATATTATCAGTTAAA 2101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101907106350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5