BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488819
Length=1096
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19340.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1581 0.0
> AT5G19340.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G05980.1);
Has 1000 Blast hits to 906 proteins in 61 species: Archae
- 0; Bacteria - 4; Metazoa - 62; Fungi - 36; Plants - 128; Viruses
- 4; Other Eukaryotes - 766 (source: NCBI BLink). | chr5:6515092-6516205
REVERSE LENGTH=1114
Length=1114
Score = 1581 bits (856), Expect = 0.0
Identities = 1042/1125 (93%), Gaps = 40/1125 (4%)
Strand=Plus/Plus
Query 1 GTTTGTAACTTCATAACTAGCTCCATTGTTACATAGTACGATCATGGTATCAGCAGAAAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTTTGTAACTTCATAACTAGCTCCATTGTTACATAGTACGATCATGGTATCAGCAGAAAC 60
Query 61 GGCGACAATGGCGGAGGCGGAACAGTCGTTGACAGGGCCTCGCATTTCCTTCTCAGCGGA 120
|||||||||||| ||||| |||| |||| ||||||||||||||||||||||||||||||
Sbjct 61 GGCGACAATGGCTGAGGCTGAACCGTCGACGACAGGGCCTCGCATTTCCTTCTCAGCGGA 120
Query 121 TTTGTCATCATCAGATAGCGACGGAGATTTCATCTGCATCAACCCTGTGATGAATCTCAT 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 TTTGTCATCATCAGATAGCGACGGAGATTTCATCTGTATCAACCCTGTGATGAATCTCAT 180
Query 181 TGTGGGTAAAGAAGAAAAAGACAAGACCTCAGTGAAAGCCGGAGACTTTGAGTTTCTGTC 240
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TGTGGGTAGAGAAGAAAAAGACAAGAGCTCAGTGAAAGCCGGAGACTTTGAGTTTCTGTC 240
Query 241 GGAAAATGCAACGATGCTTAGCGCTGACGAGTTGTTCTCTGAAGGAAAGTTACTTCCTTT 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 GGAAAATGCAACGATGCTTAGCGCTGACGAGTTGTTCTCCGAAGGAAAGTTACTTCCTTT 300
Query 301 CTGGCAGGTTAAGCATTCAGAGAAGCTTAAAAACGTTACCTTgaaaacaaaagtcgaagt 360
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 301 CTGGCAGGTTAAGCATTCAGAGAAGCTTAAAAACGTTACATTGAAACCAAAAGTCGAAGT 360
Query 361 cgaagaagaagaagaagatcagaaagtagtgaaagaGGAGGGTATTGTTCATAAC-A--A 417
| || |||||||||||||||| ||||||||||| ||||||||| ||||||||||| | |
Sbjct 361 CCAACAAGAAGAAGAAGATCATAAAGTAGTGAACGAGGAGGGTTTTGTTCATAACAAGGA 420
Query 418 -CAAG-G------AGCAA-GAGAATAACAACAACAACAACAGAGGAAGCTGGTTTCTTGA 468
|||| | | ||| | || |||||||||||||||||||||||||||||||||||
Sbjct 421 GCAAGAGAATAATAACAACAACAACAACAACAACAACAACAGAGGAAGCTGGTTTCTTGA 480
Query 469 CGACGACCCTTCTCCACGTCCACCGAAGTGCACGGTGCTGTGGAAAGAGCTTTTGCGGTT 528
|||||||||||||||||||||||| || || || |||||||||||||||||||||||| |
Sbjct 481 CGACGACCCTTCTCCACGTCCACCAAAATGTACTGTGCTGTGGAAAGAGCTTTTGCGGCT 540
Query 529 GAAGAAACAGAGGACT---ACGACAACGACGGTTTCGTCAACGAGGGTATCGTCTCTCTC 585
|||||||||||||||| ||||| ||||||| | |||||||||||||||||||||||
Sbjct 541 GAAGAAACAGAGGACTACCACGACTACGACGG---CTTCAACGAGGGTATCGTCTCTCTC 597
Query 586 GCCGTCTTCTTCTTCTAGCTCGACTTCGTCTTCTTCGAGTTCGATTGGGGATGCGGTgaa 645
||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 598 GCCGTCTTCTTCTTCAAGCTCGACATCGTCTTCTTCGAGTTCGATTGGCGATGCGGTGAA 657
Query 646 gaaggaggagagagagaaggaagggaagagaggtaagaaagggttagagagaacgagaTC 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GAAGGAGGAGAGAGAGAAGGAAGGGAAGAGAGGTAAGAAAGGGTTAGAGAGAACGAGATC 717
Query 706 TGTGACTATGAGGATAAGACCAATGATTCATGTTCCTGTTTGTACTCCGTCTAAGTCCTC 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TGTGACTATGAGGATAAGACCAATGATTCATGTTCCTGTTTGTACTCCGTCTAAGTCCTC 777
Query 766 TGCTCGATTGCCTCCTCTGTTTCCTATAAGGCTCCAGAAAAACAGAGTTGAGAGACGAAC 825
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 778 TTCTCGATTGCCTCCTCTGTTTCCTCTAAGGCTCCAGAAAAACAGAGTTGAGAGATGAAC 837
Query 826 TTGATCAACATATCTGTTTATCTATTTGTGACTTATATCTATCCTT--CCTTTGGTTGGG 883
||||||||||||||||||||||| |||||||||||||| | | || ||||||||||||
Sbjct 838 TTGATCAACATATCTGTTTATCTTTTTGTGACTTATATATCTGTTTATCCTTTGGTTGGG 897
Query 884 TTTTTTGTGATTAGATGGATCTTTGTGATTGAGGA-CTGAGGTGTGACAGTGTAAATGTG 942
||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 898 TTTTT-GTGATTAGATGGATCTTTGTGATTGAG-ATCTGAGGTGTGACAGTGTAAATGTG 955
Query 943 AAGGGCATTTTCATACCCGAAAACAATAAGA--TG--A--AT--A-CAC--CCattttta 991
| ||||||||||||||||||||||||||||| | | || | ||| |||||||||
Sbjct 956 ATGGGCATTTTCATACCCGAAAACAATAAGAAATTTCATCATTGAACACATCCATTTTTA 1015
Query 992 tgctttttcatttcattatgtttttggattcgaaagtcttgttctttttttGTGTATCTC 1051
|||||||||||| || || ||||||||||||||||||||||||| || |||||||||
Sbjct 1016 TGCTTTTTCATT--AT---GTATTTGGATTCGAAAGTCTTGTTCTTTGTT-GTGTATCTC 1069
Query 1052 TGTCTGTATCTAAGCCTAAAGTTTTCAAAGGTTTGGGTTTATTAG 1096
|||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 TGTCAGTATCTAAGCCTAAAGTTTTCAAAGGTTTGGGTTTATTAG 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53714583150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5