BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488820
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 2222 0.0
> AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518838-6521474 FORWARD LENGTH=1597
Length=1597
Score = 2222 bits (1203), Expect = 0.0
Identities = 1440/1545 (93%), Gaps = 54/1545 (3%)
Strand=Plus/Plus
Query 1 GCCGACCCGTCGCGTCGTGGGTTTAGG-TTAACGTATTGGCG-G-CAGTGAAG-AAA-AG 55
||||||||||||||||||||||||||| |||||||||||||| | |||||||| ||| ||
Sbjct 75 GCCGACCCGTCGCGTCGTGGGTTTAGGTTTAACGTATTGGCGCGCCAGTGAAGAAAATAG 134
Query 56 A-GACGATGGCGATGATGCAGCCGCCGCA---GCCGCAAGGCTCCTATCACCATCCTCAG 111
| |||||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 135 ACGACGATGGCGATGATGCATCCTCCGCAGCCGCCGCAAGGCTCCTATCACCATCCTCAG 194
Query 112 ACCCTGGAAGAAGTTCGAACTCTTTGGATTGGTGATTTGCAGTACTGGGTCGACGAAAAT 171
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 ACGCTCGAAGAAGTTCGAACTCTTTGGATTGGTGATTTGCAGTACTGGGTCGACGAAAAT 254
Query 172 TACCTCACTTCCTGCTTCTCCCAAACCGGCGAGCTTGTTTCTGTCAAGGTAATACGTAAC 231
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 255 TACCTCACTTCCTGCTTCTCCCAAACCGGCGAGCTCGTTTCTGTCAAGGTAATACGTAAC 314
Query 232 AAGATCACGGGACAGCCAGAGGGGTATGGTTTTATAGAGTTTATATCTCATGCAGCAGCC 291
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 AAGATCACGGGACAGCCAGAGGGGTATGGTTTTATAGAGTTTATATCTCATGCAGCAGCA 374
Query 292 GAGAGAACTCTGCAGACGTACAATGGGACACAGATGCCTGGAACGGAACTAACTTTTCGG 351
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 375 GAGAGAACTCTGCAGACGTACAATGGGACACAGATGCCTGGAACTGAGTTAACTTTTCGG 434
Query 352 TTAAATTGGGCTTCTTTTGGTTCTGGACAGAAAGTAGATGCTGGACCTGATCATTCTATC 411
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 435 TTAAATTGGGCTTCTTTTGGTTCAGGACAGAAAGTTGATGCTGGACCTGATCATTCTATC 494
Query 412 TTTGTTGGAGATTTAGCACCTGATGTTACAGATTATCTTCTTCAAGAGACATTCCGTGTT 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 TTTGTTGGAGATTTAGCACCTGATGTTACAGATTATCTTCTTCAAGAGACATTCCGTGTT 554
Query 472 CATTATTCTTCTGTTAGAGGTGCCAAGGTTGTTACTGATCCAAGTACTGGACGATCAAAG 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 CATTATTCTTCTGTTAGAGGTGCCAAGGTTGTTACTGATCCAAGTACTGGACGATCAAAG 614
Query 532 GGTTATGGATTTGTAAAATTTGCAGAGGAAAGTGAAAGGAATCGGGCTATGGCTGAAATG 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 GGTTATGGATTTGTAAAATTTGCAGAGGAAAGTGAAAGGAATCGGGCTATGGCTGAAATG 674
Query 592 AATGGTTTGTATTGCTCAACAAGGCCTATGCGTATTAGCGCAGCGACGCCTaaaaaaaaC 651
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 675 AATGGTTTGTATTGCTCAACAAGGCCTATGCGTATTAGCGCAGCAACACCTAAAAAAAAC 734
Query 652 GTTGGTGTACAGCAACAATATGTCACCAAAG--GT---CC-AGT-AC---C--ATCTGCA 699
|| ||||| |||||||||||||||||||||| || || ||| || | |||||||
Sbjct 735 GTCGGTGTGCAGCAACAATATGTCACCAAAGCTGTTTACCCAGTTACAGTCCCATCTGCA 794
Query 700 GTTGCTGCACCAGTCCAAGCATACGTTGCTCAACCTGGACAAGGGCTTCCACCTGAAAGT 759
||||||||||||||||||||||||||||||| | || || ||||||
Sbjct 795 GTTGCTGCACCAGTCCAAGCATACGTTGCTC--C----AC-----CT-------GAAAGT 836
Query 760 GATGTCACCTGTACAACGATTTCAATTGCCAATTTGGACCCAAATGTTACAGAGGAAGAG 819
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 837 GATGTCACCTGTACAACGATTTCAGTTGCCAATTTGGACCAAAATGTTACAGAGGAAGAG 896
Query 820 CTGAAGAAAGCATTCTCCCAATTAGGAGAGATTATTTATGTCAAAATACCTGCAACAAAG 879
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 897 CTGAAGAAAGCATTCTCCCAATTAGGAGAGGTTATTTATGTCAAAATACCTGCAACAAAG 956
Query 880 GGATATGGTTATGTTCAATTCAAAACCAGGCCTTCTGCCGAAGAAGCCGTTCAGAA-AAT 938
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||
Sbjct 957 GGATATGGTTATGTTCAATTCAAAACCAGGCCTTCTGCAGAAGAAGCTGTTCA-AAGAAT 1015
Query 939 GCAGGGACAAGTGATTGGTCAACTAGCAGTTCGCATCTCTTGGAGTAAAAATCCAGGACA 998
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1016 GCAGGGACAAGTGATTGGTCAACAAGCAGTTCGCATCTCTTGGAGTAAAAATCCAGGACA 1075
Query 999 GGATGGTTGGGTTGCACAAGCAGATCCGAATCAGTGGAATGGGTATTATGGTTATGGGCA 1058
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GGATGGTTGGGTTACACAAGCAGATCCGAATCAGTGGAATGGGTATTATGGTTATGGGCA 1135
Query 1059 AGGCTATGATGCATATGGTTATGGGACAACTCAAGACCCATCCTTGTACACATATGGCGG 1118
||||||||||||||||| ||||||| |||||||||| |||||| ||||| ||||||| ||
Sbjct 1136 AGGCTATGATGCATATGCTTATGGGGCAACTCAAGATCCATCCGTGTACGCATATGGTGG 1195
Query 1119 ATATGGCTATCCCCAGTATCCACAGCAGGGAGAGGGTACACAAGACATTTCGAACTCGGC 1178
||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 1196 ATATGGCTATCCCCAGTATCCGCAACAGGGAGAGGGTACACAAGACATTTCGAACTCTGC 1255
Query 1179 GGCGGGTGGAGTTGCAGGTGCAGAGCAAGAGTTGTATGATCCTCTGGCCACTCCTGATGT 1238
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 GGCGGGTGGAGTAGCAGGTGCAGAGCAAGAGTTGTATGATCCTCTGGCCACTCCTGATGT 1315
Query 1239 AGACAAGTTAAATGCTGCTTACCTTTCGGTTCATGCAAGTGTTATATTAGGACGGCAAAT 1298
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||
Sbjct 1316 AGACAAGTTAAATGCTGCTTACCTTTCGGTTCATGCAAGTGCCATATTAGGAAGGCCAAT 1375
Query 1299 GTGGCAGCGTACCTCAGCACTCACATCACAATTGGGAAAATGAT-GGCGAAGAGAGGAAT 1357
||||||||| |||||| | ||||||||||||||||| ||||||| || ||||||| ||||
Sbjct 1376 GTGGCAGCGGACCTCATCGCTCACATCACAATTGGGCAAATGATCGG-GAAGAGAAGAAT 1434
Query 1358 AGAATGGTGGGTGCTTTGAGATGTTTAGTGTGTCCATTTCACTGCTCCTTGTCTGATTGT 1417
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1435 AAAATGGTGGGTGCTTTGAGATGTTTAGTGTGTCCATTTCACTGCTCTTTGTCTGATTGT 1494
Query 1418 TTTGCATGTTTCAGATGTTTCTGTAATCTTACAATTAGGTTCTAGTTACAATGCTAAATC 1477
|| | | ||| |||||||||||| ||| ||||| |||||||||||||| |||||
Sbjct 1495 TT-G---G-----GATTTTTCTGTAATCT-ACAGTTAGGATCTAGTTACAATGCAAAATC 1544
Query 1478 ATGAGTCTTCCAACTTTCC-GCCATGGCCGATGATAATGCCTTTT 1521
|||| |||||||||||| | ||||||| | |||||||||||||||
Sbjct 1545 ATGAATCTTCCAACTTTTCTGCCATGGTCAATGATAATGCCTTTT 1589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75049814775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5