BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488823
Length=995
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19370.1 | Symbols: | rhodanese-like domain-containing prot... 1467 0.0
> AT5G19370.1 | Symbols: | rhodanese-like domain-containing protein
/ PPIC-type PPIASE domain-containing protein | chr5:6524120-6526706
REVERSE LENGTH=1104
Length=1104
Score = 1467 bits (794), Expect = 0.0
Identities = 921/981 (94%), Gaps = 14/981 (1%)
Strand=Plus/Plus
Query 1 TTCTTTGAGTGGGTAACTTGT-AA--CCTCTCACACTTGGACTCTTTGCCCAAGAGAACC 57
|||||||||||| |||||||| || ||||||||||||||||| || ||||| ||||||
Sbjct 14 TTCTTTGAGTGGTTAACTTGTAAATTTCTCTCACACTTGGACTCGTTACCCAAAAGAACC 73
Query 58 CATAATGTTTAGAGTAACCGGAACTCTCTCGGCGGCATCATCTCCAGCGGTGGCGGCGGT 117
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 CATAATGTTTAGAGTGACCGGAACTCTCTCGGCGGCATCATCTCCAGCGGTGGCGGCGGC 133
Query 118 GTCTatctccgccgctctaagactctccatcactcccactctcgctatcgtctctcctcc 177
|||| ||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||
Sbjct 134 GTCTTTCTCCGCCGCTCTAAGACTTTCCATAACTCCCACTCTCGCTATCGCCTCTCCTCC 193
Query 178 tcatctccGCTGGTTCTCCACGTTTTCTCGTCAATTTCTCGGCGGACGCATCTCTTCACT 237
|||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 194 CCATCTCCGTTGGTTCTCGAAGTTTTCTCGTCAATTTCTCGGCGGACGCATCTCTTCACT 253
Query 238 CCGACCACGCATTCCTTCTCCGTGCCCGATTCGACTCTCTGGTTTCTCGGCTCTCAAAAT 297
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 254 CCGACCACGCATTCCTTCTCCGTGCCCGATTCGACTCTCTGGTTTCCCGGCTCTCAAAAT 313
Query 298 GAGAGCTTCGTTTAGC------AGT-G-GG-AGTAGTGCAAGTAGAGAGATTCTGGTGCA 348
|||||||||||||||| ||| | || |||||||||||||||||||||||||||||
Sbjct 314 GAGAGCTTCGTTTAGCAGTGGGAGTAGTGGAAGTAGTGCAAGTAGAGAGATTCTGGTGCA 373
Query 349 GCATTTGCTTGTTAAGGATGATGATGTTGAGCTCTTTGCTGAACTCCAAAAGAGAA-TCT 407
|||||||||||||||| || ||||||||||||||||||| ||||||||||||| || |||
Sbjct 374 GCATTTGCTTGTTAAGAATAATGATGTTGAGCTCTTTGCCGAACTCCAAAAGA-AATTCT 432
Query 408 TGGAAGGAGAGGAGATGAGTGATCTTGCGGCTGAGTACTCGATTTGTCCATCCAAAAAGG 467
|||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 433 TGGATGGAGAGGAGATGAGTGATCTTGCGGCTGAGTATTCGATTTGTCCTTCCAAAAAGG 492
Query 468 ACGGTGGTGTACTTGGATGGGTAAAACTGGGTCAAATGGTACCAGAGTTTGAGGAAGCTG 527
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 ACGGTGGTATACTTGGATGGGTAAAACTGGGTCAAATGGTACCAGAGTTTGAGGAAGCTG 552
Query 528 CGTTTAAAGCAGAGCCGAATCAGGTGGTGAGGTGTAGAACCCAATTTGGCTTGCACTTAT 587
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 CGTTTAAAGCAGAGCTGAATCAGGTGGTGAGGTGTAGAACCCAATTTGGCTTGCACTTAT 612
Query 588 TGCAAGTTCTATCTGAGAGAGAACCAGTGAAAGATATCCAGGTAGAGGAGCTACATTCCA 647
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 613 TGCAAGTTCTATCTGAGAGAGAACCGGTGAAAGATATCCAGGTAGAGGAGCTGCATTCCA 672
Query 648 AAATGCAAGATCCAGTTTTCATGGATGAGGCTCAGTTAATTGATGTCAGAGAACCCGACG 707
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 673 AAATGCAAGATCCAGTTTTCATGGATGAGGCTCAGTTAATTGATGTCAGAGAACCCAATG 732
Query 708 AGATAGCCATTGCATCCTTGCCAGGATTCCAAGTGCTCCCGCTCCGTCAATTCGGAACCT 767
|||||| || |||||||||||||||||| ||||| |||| ||||| ||||| ||||| |
Sbjct 733 AGATAGAGATAGCATCCTTGCCAGGATTCAAAGTGTTCCCACTCCGCCAATTTGGAACAT 792
Query 768 GGGCACCAGACATCACTTCAAAGCTGAACCCTGAGAAGGATACATTTGTCTTGTGCAAGG 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 GGGCACCAGACATCACTTCAAAGCTGAACCCTGAGAAGGATACATTTGTCTTGTGCAAGG 852
Query 828 CTGGTGGCAGATCGATGCAAGTTGCCAACTGGTTACAGTCTCAGGGCTTCAAGAGTGTAT 887
||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 853 TTGGTGGCAGGTCAATGCAGGTTGCCAACTGGTTACAGTCTCAGGGCTTCAAGAGTGTGT 912
Query 888 ACAACATCGCTGGTGGAATACAAGCTTATTCTCTCAAGGTTGACCCATCAATTCCTACCT 947
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 913 ACAACATTACTGGTGGGATACAAGCTTATTCTCTCAAGGTTGACCCATCAATTCCTACTT 972
Query 948 ACTGAAATTGAGCATCTTAGT 968
|||||||||||||||||||||
Sbjct 973 ACTGAAATTGAGCATCTTAGT 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48727122590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5