BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488830
Length=1846
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19410.1 | Symbols: | ABC-2 type transporter family protein... 2894 0.0
> AT5G19410.1 | Symbols: | ABC-2 type transporter family protein
| chr5:6545237-6547111 REVERSE LENGTH=1875
Length=1875
Score = 2894 bits (1567), Expect = 0.0
Identities = 1756/1849 (95%), Gaps = 6/1849 (0%)
Strand=Plus/Plus
Query 1 ATGGCTACAAGCCGCCGCGAAGAAGACTCCATCATTCTTTTCTCATCCTCAAACTCTCCT 60
||||||||||||| |||||| |||||||||||||||||||||||| | ||||||||||||
Sbjct 28 ATGGCTACAAGCCACCGCGAGGAAGACTCCATCATTCTTTTCTCAGCATCAAACTCTCCT 87
Query 61 GATGAATTCTCCTCTGCTTCCTCTTCATTTTCTTCTTCGCCACTCCCAAGCCCTAACCGC 120
|||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||
Sbjct 88 GATGAATTCTCCTCTGCTTCCTCTTCCTTTTCTTCTTCACCACTCCCAACCCCTAACCGC 147
Query 121 TACTCTTTAACCGTCACTAACCTCTCCTACACCATCCATCACACCCCAATACTCAAATCT 180
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||
Sbjct 148 TACTCTTTAACCGTCACTAACCTATCCTACACCATCAATCACACCCCAATACTCAATTCC 207
Query 181 GTTTCATTAGCTGCTGAATCCTCTAAAATCCTAGCCGTGGTTGGCCCTAGCGGAACAGGC 240
|||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 208 GTTTCATTAGCTGCTGAATCCTCTAAAATCCTAGCCGTGGTTGGACCGAGTGGAACAGGA 267
Query 241 AAATCCACTCTTTTGAAA-ATCATTTCAGGAAGCGTGAACCACAAGGCACTGGATCCGTC 299
|||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 268 AAATCCACTCTTTT-AAAGATCATTTCAGGAAGAGTGAACCACAAGGCACTAGATCCGTC 326
Query 300 TTCCG-GGATTTTGATAAACAATCGTAGAATTACCGACTACAATCAGCTACGCAGGCTAT 358
||||| || ||||||| |||||||||| ||| || ||||| || || ||||| |||||||
Sbjct 327 TTCCGCGG-TTTTGATGAACAATCGTAAAATCACTGACTATAACCAACTACGAAGGCTAT 385
Query 359 GCGGGTTTGTCCCGCAGGACGATGACCTACTGCCTCTACTTACCGTGAAAGAGACGTTAA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 GCGGGTTTGTCCCGCAGGACGATGACCTACTGCCTCTACTTACCGTGAAAGAGACGTTAA 445
Query 419 TGTATAGCGCCAAATTCAGTTTGAGAGATTCAACGGCTAAGGAAAGAGAAGATAGAGTGG 478
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 446 TGTATAGCGCCAAATTCAGTTTGAGAGATTCAACGGCTAAGGAAAGAGAAGAGAGAGTGG 505
Query 479 AGAGCTTATTGAGTGATCTCGGTCTTGTTCTAGTCCAAGACAGCTTCGTTGGAGAAGGAG 538
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 506 AGAGCTTGTTGAGTGATCTCGGTCTTGTTCTCGTCCAAGACAGCTTCGTGGGAGAAGGAG 565
Query 539 ACGATGAAGATCGTGGTGTTTCGGGAGGAGAGAGGAAGAGAGTTTCAATAGCTGTTGAGA 598
|||| || |||||||| |||||||| ||||||||||||||||| || ||||| |||||||
Sbjct 566 ACGAAGAGGATCGTGGCGTTTCGGGTGGAGAGAGGAAGAGAGTCTCTATAGCCGTTGAGA 625
Query 599 TGATCCGTGATCCACCAATTCTGCTTCTTGACGAACCAACCTCTGGTTTGGATAGTCGAA 658
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 TGATTCGTGATCCACCAATTCTGCTTCTTGACGAACCAACCTCTGGTTTGGATAGTCGAA 685
Query 659 ACTCGCTCCAGGTCGTTGAGCTTTTGGCTACTATGGCAAAATCCAAACAGAGAACCGTCC 718
||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 686 ACTCGCTTCAGGTTGTTGAGCTTTTGGCTACTATGGCGAAATCCAAACAGAGAACCGTCC 745
Query 719 TTTTCTCCATCCATCAACCAAGCTATCGAATCCTCGATTACATCTCCGATTACCTGATTC 778
| ||||||||||| |||||||| ||| | |||||||||||||||||||||||||||||||
Sbjct 746 TCTTCTCCATCCACCAACCAAGTTATAGGATCCTCGATTACATCTCCGATTACCTGATTC 805
Query 779 TTTCACGCGGATCGGTTATCTACTTGGGAAGTCTTGAACATCTCGAGGACTCAATAGCGA 838
|||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 806 TTTCTCGCGGATCGGTTATCCACTTGGGAAGTCTTGAACATCTCGAGGACTCGATAGCGA 865
Query 839 AACTAGGGTTTCAGATTCCAGAACAGCTGAATCCGATAGAATTCGCCATGGAAATAGTTG 898
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 866 AACTAGGGTTTCAGATTCCAGAACAGCTGAATCCTATAGAATTCGCCATGGAAATAGTTG 925
Query 899 AGTCGTTGAGAACTTTTAAGCCAGACTCGGTAGCTGTCGTAGAATCATCATCGATGTGGC 958
|||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 926 AGTCCTTGAGAACTTTTAAGCCAAACTCGGTAGCTGTCGTAGAATCATCATCAATGTGGC 985
Query 959 CTGAAAACAACGAAAATGATGGGATTATCACAAAGAAAGAAGAGTTTCGTGTCCTAGACG 1018
|||||||||||||||| |||||||||||| | |||||||||| |||||||||||||||||
Sbjct 986 CTGAAAACAACGAAAACGATGGGATTATCTCTAAGAAAGAAGCGTTTCGTGTCCTAGACG 1045
Query 1019 TCACCGAGATCTCATATCTCTGTTCGAGGTTCTGCAAGATCATCTACAGAACAAAGCAGT 1078
|||||||||||||||| ||||| || || ||||||||||||||||| |||||||||||||
Sbjct 1046 TCACCGAGATCTCATACCTCTGCTCAAGATTCTGCAAGATCATCTATAGAACAAAGCAGT 1105
Query 1079 TATTCCTGGCGCGAACAATGCAAGCGGTGGTAGCCGGATTAGGTCTAGGCAGCGTCTACA 1138
| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 1106 TGTTCCTGGCGCGAACAATGCAAGCGGTTGTAGCTGGATTAGGTCTAGGTAGCGTCTACA 1165
Query 1139 CAAGACTCAAGCGTGACGAAGAAGGCGTAGCAGAGCGGCTAGGGCTCTTTGCCTTCAGCT 1198
|||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 1166 CAAGACTCAAGCGTGACGAAGAAGGCGTTGCAGAGCGGCTTGGACTCTTTGCCTTCAGCT 1225
Query 1199 TAAGCTTCCTCCTCTCTTCCACAGTGGAAGCACTTCCCATATACCTCCGAGAACGTCGCG 1258
||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 1226 TAAGCTTCCTCCTCTCTTCAACAGTCGAAGCACTTCCCATTTACCTCCGAGAACGTCGCG 1285
Query 1259 TTCTGATGAAAGAATCATCTCGTGGATCCTACCGAATCTCATCCTACATGATCGCCAACA 1318
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1286 TTCTGATGAAAGAATCATCTCGTGGATCCTACCGAATCTCATCCTACATGATAGCCAACA 1345
Query 1319 CCATCGCATTTGTACCGTTCCTCTTCGTTGTATCTCTCCTCTTCTCCATCCCAGTCTACT 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 CCATCGCATTTGTACCGTTCCTCTTCGTTGTATCTCTCCTCTTCTCCATCCCAGTCTACT 1405
Query 1379 GGATCGTAGGCCTAAATCCATCGATTCAAGCCTTCTCCTTCTTTGTCCTCTGCGTCTGGC 1438
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 GGATCGTAGGCCTAAACCCATCGATTCAAGCCTTCTCCTTCTTTGTCCTCTGCGTCTGGC 1465
Query 1439 TCATCATTCTCATGGCCAGTTCTCTAGTGCTCTTCCTCAGCGCGGTTTCTCCTGACTTCA 1498
||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 1466 TCATCATTCTCATGGCCAGTTCTCTGGTGCTTTTCCTCAGCGCTGTTTCTCCTGACTTCA 1525
Query 1499 TCTCCGGTAACTCCCTCATCTGCACCGTTCTTGGAGCCTTCTTCCTCTTCTCCGGCTACT 1558
|||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1526 TCTCTGGTAACTCCCTCATATGCACTGTTCTTGGAGCCTTCTTCCTCTTCTCCGGCTACT 1585
Query 1559 TTATCCCCAAAGAGAAGATCCCAAAACCATGGATGTTCATGTACTACGTGTCGCT-GTAC 1617
||||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 1586 TTATCCCAAAAGAGAAGATCCCAAAACCATGGATGTTCATGTACTATGTGTC-CTTGTAC 1644
Query 1618 CGTTACCCGCTGGAGTCTATGGTGGTGAATGAGTACTGGAGCATGCGAGAGGAATGCTTC 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1645 CGTTACCCGCTGGAGTCTATGGTGGTGAATGAGTACTGGAGCATGCGAGAGGAATGCTTC 1704
Query 1678 TCCAGCGGGAACATGGGCTGCTTGATGACCGGAGAGGATGTGTTGAAGGAGAGAGGGCTT 1737
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1705 TCCAGTGGGAACATGGGCTGCTTGATGACCGGAGAGGATGTGTTGAAGGAGAGAGGGCTT 1764
Query 1738 GACAAGGATACGAGATGGATCAATGTCGGGATCATGCTTGCCTTCTTCGTTTTCTATCGA 1797
||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 1765 GACAAGGATACGAGATGGATCAACGTCGGGATCATGCTTGCCTTTTTCGTTTTTTATCGA 1824
Query 1798 ATCCTCTGCTGGGGGATTCTACTCAGAAAGGCTTCCAAGTCAACCCATT 1846
|||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1825 ATCCTCTGCTGGGGTATTCTACTCAGGAAGGCTTCCAAGTCAACCCATT 1873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91364991900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5