BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488831
Length=3774
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19420.2 | Symbols: | Regulator of chromosome condensation ... 5603 0.0
AT5G12350.1 | Symbols: | Regulator of chromosome condensation ... 3369 0.0
> AT5G19420.2 | Symbols: | Regulator of chromosome condensation
(RCC1) family with FYVE zinc finger domain | chr5:6547638-6553242
REVERSE LENGTH=3988
Length=3988
Score = 5603 bits (3034), Expect = 0.0
Identities = 3345/3493 (96%), Gaps = 29/3493 (1%)
Strand=Plus/Plus
Query 309 GCTATCACTGCCCTTAAGAAAGGAGCTTATTTGCTTAAGTATGGCAGAAGGGGAAAGCCT 368
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 GCTATCACTGCTCTTAAAAAAGGAGCTTATTTGCTTAAGTATGGCAGAAGGGGAAAGCCT 495
Query 369 AAGTTCTGTCCATTTCGCCTTTCAAATGATGAATCTGTTTTGATATGGTTTTCGGGGAAG 428
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 496 AAGTTCTGTCCATTTCGCCTTTCGAATGATGAATCTGTTTTGATATGGTTTTCTGGGAAG 555
Query 429 GAGGAGAAACATTTGAAGCTAAGTCATGTCTCCAGGATCATATCTGGGCAGCGCACTCCT 488
||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 556 GAGGAAAAACATTTGAAGCTAAGTCATGTTTCCAGGATCATCTCTGGGCAGCGCACTCCT 615
Query 489 ATTTTTCAAAGATATCCACGTCCCGAGAAGGAATATCAATCGTTCTCACTAATATATGAC 548
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 616 ATTTTTCAGAGATATCCACGTCCTGAGAAGGAATATCAATCGTTCTCGCTAATATATGAC 675
Query 549 GAGAGGTCACTGGATGTGATATGCAAAGATAAAGATGAGGCTGAAGTGTGGTTTAGCGGT 608
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 676 GAGAGGTCACTGGATTTGATATGCAAGGATAAAGATGAGGCTGAAGTGTGGTTTAGTGGT 735
Query 609 TTAAAAGCCTTGATATCTCGTTGTCATCAACGGAAATGGAGGACCGAATCGAGAAGTGAT 668
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 CTAAAAGCCTTGATATCCCGTTGTCATCAACGGAAATGGAGGACCGAATCGAGAAGTGAT 795
Query 669 GGAACGCCATCCGAAGCTAATAGTCCGAGAACATATACCCGGAGAAGCTCCCCTTTACAT 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 GGAACGCCATCCGAAGCTAATAGTCCGAGAACATATACCCGGAGAAGCTCCCCTTTACAT 855
Query 729 TCTCCATTTAGTAGCAATGAAAGTTTCCAGAAGGAGGGCTCAAATCACCTTCGTCTTCAC 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 TCTCCATTTAGTAGCAATGAAAGTTTCCAGAAGGAGGGCTCAAATCACCTTCGTCTTCAC 915
Query 789 AGTCCATATGAGAGCCCGCCTAAGAATGGCATTGACAAGGCATTTTCAGACATGTCGTTG 848
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 916 AGTCCATATGAGAGCCCGCCTAAGAATGGCGTTGACAAGGCATTTTCAGACATGTCGTTG 975
Query 849 TATGCAGTTCCTCCAAAAGGtttttttCCCCCAGATTCGGCAACCATGTCTGTTCACTCT 908
|||||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||||||
Sbjct 976 TATGCAGTTCCTCCAAAAGGTTTTTTCCCCCCAGGTTCGGCAACTATGTCAGTTCACTCT 1035
Query 909 TTATCATCTGGAGGCTTAGATACACTACATGGTCACATGAAAGGAATGGGTATGGATGCT 968
|| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1036 TTGTCATCTGGAGGCTCAGATACGCTACATGGTCACATGAAAGGAATGGGTATGGATGCT 1095
Query 969 TTTAGAGTTAGTCTGTCAAGTGCGATTAGTTCGTCGAGCCATGGTTCTGGTCACGATGAT 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1096 TTTAGAGTTAGTCTGTCAAGTGCGATTAGTTCGTCGAGCCATGGTTCTGGTCATGATGAT 1155
Query 1029 GGAGACACATTGGGAGACGTTTTCATGTGGGGAGAAGGAATAGGCGAAGGTGTTTTGGGT 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 GGAGACACATTGGGAGACGTTTTCATGTGGGGAGAAGGAATAGGCGAAGGTGTTTTGGGT 1215
Query 1089 GGTGGAAATTACAGAGTTGGAAGTTCGTTGGAGATCAAAATGGATTCCTTATTGCCAAAA 1148
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1216 GGTGGAAACCACAGAGTTGGAAGTTCGTTGGAGATCAAAATGGATTCCTTACTGCCAAAA 1275
Query 1149 GCTTTAGAGTCTACTATAGTACTTGATGTACAGAATATTGCTTGTGGTGGACAACATGCT 1208
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1276 GCTTTAGAGTCTACTATAGTACTTGATGTCCAGAATATTGCTTGCGGTGGACAACATGCT 1335
Query 1209 GTCCTTGTGACAAAACAAGGAGAAAGTTTTTCTTGGGGAGAGGAATCTGAAGGTAGGCTT 1268
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 GTCCTTGTAACAAAACAAGGAGAAAGTTTTTCTTGGGGAGAGGAATCTGAAGGTAGGCTT 1395
Query 1269 GGCCATGGTGTAGATTCCAATGTTCAACATCCAAAGCTCATTGATGCCCTCAGTACCACA 1328
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1396 GGCCATGGTGTGGATTCCAATGTTCAACATCCAAAGCTCATTGATGCCCTCAATACCACA 1455
Query 1329 AATATTGAGCTTGTAGCATGTGGTGAATACCATAGTTGTGCAGTTACTCTATCGGGGGAT 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 AATATTGAGCTTGTAGCATGTGGTGAATACCATAGTTGTGCAGTTACTCTATCGGGGGAT 1515
Query 1389 TTGTATACCTGGGGTAAAGGAGATTTTGGTATTCTGGGACATGGAAATGAAGTCAGTCAC 1448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1516 TTGTATACCTGGGGTAAAGGAGATTTTGGTATTCTGGGACATGGAAATGAAGTCAGTCAC 1575
Query 1449 TGGGTCCCCAAAAGAGTAAATTTTCTGATGGAAGGGATACATGTATCATCCATCGCTTGT 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1576 TGGGTCCCCAAAAGAGTAAATTTTCTGATGGAAGGGATACATGTATCATCCATCGCTTGT 1635
Query 1509 GGACCTTACCACACAGCTGTTGTGACTTCTGCTGGCCAGTTGTTTACTTTTGGTGATGGG 1568
|| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1636 GGGCCTTACCACACAGCTGTTGTGACTTCCGCTGGGCAGTTGTTTACTTTTGGTGATGGG 1695
Query 1569 ACCTTTGGTGTTTTGGGCCATGGAGACAGGAAAAGTGTTTTCATACCTAGAGAGGTAGAC 1628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1696 ACCTTTGGTGTTTTGGGCCATGGAGACAGGAAAAGTGTTTTCATACCTAGAGAGGTAGAC 1755
Query 1629 TCCTTGAAAGGTCTTCGCACTGTTCGGGCAGCCTGTGGTGTATGGCACACAGCCGCAGTT 1688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1756 TCCTTGAAAGGTCTTCGCACTGTTCGGGCAGCCTGTGGTGTATGGCACACAGCCGCAGTT 1815
Query 1689 GTAGAAGTCATGGTTGGGAGCTCGAGCTCTAGTAACTGCTCTTCAGGAAAGCTCTTTACA 1748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1816 GTAGAAGTCATGGTTGGGAGCTCGAGCTCTAGTAACTGCTCTTCAGGAAAGCTCTTTACA 1875
Query 1749 TGGGGTGATGGTGACAAGAGTCGTCTTGGTCACGGTGACAAAGAACCAAAACTTGTGCCT 1808
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1876 TGGGGTGATGGTGACAAGAGTCGTCTTGGTCATGGTGACAAAGAACCAAAACTTGTGCCT 1935
Query 1809 ACCTGTGTTGCAGCTCTTGTAGAACCCAATTTTTGTCAAGTTGCGTGCGGACATAGCCTA 1868
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1936 ACCTGTGTTGCAGCTCTTGTAGAACCTAATTTTTGTCAAGTTGCGTGTGGACATAGCCTA 1995
Query 1869 ACAGTTGCACTGACAACATCGGGCCATGTCTATACTATGGGTAGTCCTGTTTATGGTCAG 1928
||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1996 ACAGTTGCACTTACAACATCGGGCCACGTCTATACTATGGGCAGTCCTGTTTATGGTCAG 2055
Query 1929 CTTGGAAACCCACATGCAGATGGAAAGGTTCCAACCCGTGTTGAAGGTAAACTTCACAAG 1988
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 2056 CTTGGAAACCCACATGCAGATGGAAAGGTTCCAACCCGTGTCGACGGCAAACTTCACAAG 2115
Query 1989 AGTTTTGTCGAAGAGATTGCTTGCGGTGCTTATCATGTTGCAGTTTTAACTTCAAGGACT 2048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2116 AGTTTTGTCGAAGAGATTGCTTGCGGTGCTTATCATGTTGCAGTTTTAACTTCAAGGACT 2175
Query 2049 GAGGTTTACACTTGGGGAAAAGGATCAAATGGTAGACTAGGCCATGGGGATGCAGATGAT 2108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2176 GAGGTTTACACTTGGGGAAAAGGATCAAATGGTAGACTAGGCCATGGGGATGCAGATGAT 2235
Query 2109 CTAAATTCCCCGACATTGGTTGAGTCGCTGAAGGATAAACAGGTGAAAAGTATTGCCTGT 2168
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2236 CGAAATTCCCCCACATTGGTTGAGTCGCTGAAGGATAAACAGGTGAAAAGTATTGCATGT 2295
Query 2169 GGTTCTAACTTCACCGCAGCTGTTTGCCTTCACAAGTGGGCATCAGGGATGGACCAGTCC 2228
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 2296 GGTTCTAACTTCACCGCAGCTGTCTGTCTTCACAAGTGGGCATCAGGGATGGACCAGTCC 2355
Query 2229 ATGTGTTCAGGTTGCCGTCAGCCTTTCAATTTCAAGAGAAAGCGGCACAATTGTTATAAC 2288
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2356 ATGTGTTCAGGTTGCCGTCAGCCTTTCAATTTCAAGAGAAAGCGGCACAATTGCTATAAC 2415
Query 2289 TGTGGACTTGTGTTTTGCCATTCTTGCACTAATAAAAAGTCCCTGAAGGCTTGTATGGCA 2348
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2416 TGTGGACTTGTGTTTTGCCATTCTTGCAGTAATAAAAAGTCCCTGAAGGCTTGTATGGCA 2475
Query 2349 CCGAACCCGAACAAACCATATAGAGTGTGTGATAGGTGTTTCAATAAATTGAAAAAGGCC 2408
|| ||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 2476 CCAAACCCTAACAAACCATATCGAGTGTGTGATAGGTGTTTCAACAAATTGAAAAAGGCC 2535
Query 2409 ATGGAAACGGATCCATCATCTCATTCTTCTTTGAGTCGAAGAGAAAGTGTCAACCAAGGA 2468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2536 ATGGAAACGGATCCATCATCTCATTCTTCTTTGAGTCGAAGAGAAAGTGTCAACCAAGGA 2595
Query 2469 TCAGATGCAATTGACAGAGATGAGAAGTTGGATACTAGATCTGACGGACAGCTAGCTAGA 2528
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2596 TCAGATGCAATTGACAGAGATGAGAAGTTGGATACTAGATCCGACGGACAGCTAGCTAGA 2655
Query 2529 TTCTCATTGTTGGAGCCCATGAGGCAAGTGGACAGTCGTTCCAAGAAAAATAAGAAATAT 2588
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2656 TTCTCATTGTTGGAGCCCATGAGGCAAGTGGACAGTCGATCCAAGAAAAATAAGAAATAT 2715
Query 2589 GAATTCAATAGTAGTCGTGTCTCACCAATACCAAGTGGAGGCTCTCACCGGGGTTCACTA 2648
|||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 2716 GAATTCAATAGTAGTCGTGTCTCACCAATACCGAGTGGGGGCTCGCACCGGGGTTCACTA 2775
Query 2649 AACATAACCAAGTCTTTTAACCCAACCTTCGGATCATCAAA-AAAGTTCTTCTCAGCATC 2707
|||||||||||||||||||| ||||| |||||||||||||| ||| ||||||||||| ||
Sbjct 2776 AACATAACCAAGTCTTTTAATCCAACTTTCGGATCATCAAAGAAA-TTCTTCTCAGCTTC 2834
Query 2708 AGTTCCTGGTTCCCGAATTGTGTCTCGAGCAACTTCACCAATATCAAGACGTCCTAGCCC 2767
|||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||
Sbjct 2835 AGTTCCTGGTTCCCGAATTGCGTCCCGGGCAACTTCACCAATATCAAGACGTCCTAGCCC 2894
Query 2768 ACCTCGCTCAACAACGCCAACTCCCACTCTTTCAGGACTAACTACACAAAAAATTGTCGT 2827
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2895 ACCTCGGTCAACAACGCCAACTCCCACTCTTTCAGGACTAACTACACCAAAAATTGTCGT 2954
Query 2828 GGATGATACCAAGAGAACCAATGATAACCTAAGCCAGGAGGTGGTTATGCTAAGATCTCA 2887
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 2955 GGATGATACCAAGAGAAGCAATGATAACCTAAGCCAAGAGGTGGTTATGCTAAGATCTCA 3014
Query 2888 AGTTGAAAATCTTACACGGAAGGCACAGCTTCAAGAAGTTGAATTGGAAAGAACAACCAA 2947
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 3015 AGTTGAAAATCTTACACGGAAGGCACAACTTCAAGAAGTTGAACTGGAAAGAACAACCAA 3074
Query 2948 ACAGCTAAAGGAGGCACTAGCAATCGCTAGCGAAGAATCAGCAAGATGCAAGGCAGCGAA 3007
|||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||
Sbjct 3075 ACAGCTAAAGGAGGCACTAGCAATTGCTAGTGAAGAATCAGCGAGATGCAAGGCAGCAAA 3134
Query 3008 AGAAGTGATTAAATCACTTACCGCTCAATTGAAAGACATGGCTGAAAGACTACCTGTTGG 3067
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3135 AGAAGTGATCAAATCACTTACCGCTCAATTGAAAGACATGGCTGAAAGACTACCTGTTGG 3194
Query 3068 ATCAGCTCGGACTATCAAGTCTCCTTCTCTTAATTCATTTGGTTCCAGTCCTGATTACGT 3127
||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 3195 ATCAGCTCGGACTGTCAAGTCTCCGTCTCTCAATTCATTTGGTTCCAGTCCTGATTACGC 3254
Query 3128 TGCCCCTTCTTCTAACACCTTAAACCGTCCAAACAGCCGAGAAACTGATTCTGAGAGCCC 3187
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 3255 TGCCCCTTCTTCTAACACCTTAAACCGTCCAAACAGTCGAGAAACTGATTCTGATAGCCT 3314
Query 3188 AATGACCGTCCCAATGTTTTCCAACGGGACCAGCACACCTGTTTTCGATAGTGCAAGTTA 3247
|| ||||||||||||||||| || |||||||||||||||||||||||||||| ||||||
Sbjct 3315 AACCACCGTCCCAATGTTTTCAAATGGGACCAGCACACCTGTTTTCGATAGTGGAAGTTA 3374
Query 3248 CCGACAGCAAGCTAATCATGCTGCTGATGCAATAAATAGAATCAGCACACGATCAAAAGA 3307
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 3375 CCGACAGCAAGCTAATCATGCTGCTGAAGCGATAAATAGAATCAGCACACGATCAAAAGA 3434
Query 3308 AAGTGAACCCCGTAACGAGAAGGAATGGGTTGAACAAGATGAACCTGGTGTGTACATCAC 3367
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 3435 AAGTGAACCCCGTAACGAAAATGAATGGGTTGAACAAGATGAACCTGGTGTGTACATCAC 3494
Query 3368 TCTCACAGCCTTAGCTGGAGGTGCAAGGGATCTCAAACGTGTCCGTTTCAGTCGGAAGCG 3427
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3495 TCTCACAGCCTTAGCTGGAGGTGCAAGGGATCTCAAACGTGTCCGTTTCAGCCGGAAGCG 3554
Query 3428 GTTTAGCGAGAAACAAGCAGAAGAATGGTGGGCAGAGAACAGAGGAAGAGTTTACGAACA 3487
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3555 GTTTAGTGAGAAACAAGCAGAAGAATGGTGGGCAGAGAACAGAGGAAGAGTTTACGAACA 3614
Query 3488 ATACAATGTACGCATAGTCGTTGATAAATCCAGTGTGGGTGTAGGGAGTGAAGACTTGGG 3547
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 3615 ATACAATGTACGCATAGTAGTTGATAAATCCAGTGTGGGTGTAGGAAGTGAAGACTTGGG 3674
Query 3548 TCATTAGTATTCTTTGTTTACCCCAATATAACACAGAAAACCG-GAGTTTCCCACTCATC 3606
|||||| ||||||| | | ||||| ||||||||||||||| ||||||||||||||||
Sbjct 3675 TCATTAATATTCTTCGCTAACCCCTG-ATAACACAGAAAACCCTGAGTTTCCCACTCATC 3733
Query 3607 TATTCtttttttGGT-CAA-C-ACGGGTTTCATAGGTTTATT-GGGGATTTTAACCAAGA 3662
||||||||||| | | | | |||||||||||||||||||| ||||||| |||||||||
Sbjct 3734 TATTCTTTTTTAGTTTCTGTCTACGGGTTTCATAGGTTTATTTGGGGATTATAACCAAGA 3793
Query 3663 GAGAAAATAGTTTTCAT----GT--G--T-------A-A---A--TTCTTTTGTAAATTC 3701
||||||||||||||||| || | | | | | |||||||||||||||
Sbjct 3794 GAGAAAATAGTTTTCATCATAGTTTGGGTGTTTTTCATATGTAAATTCTTTTGTAAATTC 3853
Query 3702 TATAAACATACATTGTTTCTTTCTTTCTCTCTATAAATGCTATTATTTGCTGTGGAAATT 3761
| || ||||||||||||| |||||| |||| ||||||| ||||||||| ||| ||||||
Sbjct 3854 CACAAGCATACATTGTTTCGTTCTTTGTCTCGATAAATGTTATTATTTGATGTTGAAATT 3913
Query 3762 CAAACAGCACTAA 3774
||||||||| |||
Sbjct 3914 CAAACAGCATTAA 3926
> AT5G12350.1 | Symbols: | Regulator of chromosome condensation
(RCC1) family with FYVE zinc finger domain | chr5:3995342-4000801
FORWARD LENGTH=3931
Length=3931
Score = 3369 bits (1824), Expect = 0.0
Identities = 2589/2960 (87%), Gaps = 45/2960 (2%)
Strand=Plus/Plus
Query 226 TTTTGTTTATGTCGAGGAACGGACGAATGGCGTCCTCGGATCTTACTAGTAGAGCCGGTC 285
|||||| ||||||||| |||||| | ||||| | ||||||| | ||||||||| ||||
Sbjct 440 TTTTGTGTATGTCGAGAAACGGAAGGATGGC-T--TCGGATC-T--TAGTAGAGCTGGTC 493
Query 286 CAGT-GACGAGGGACATTGAGCAGGCTATCACTGCCCTTAAGAAA-GGAGCTTATTTGCT 343
| || || ||| || || ||||||||||||| |||||| || ||| |||||||| |||||
Sbjct 494 CTGTGGA-GAGAGATATCGAGCAGGCTATCATTGCCCTGAA-AAAGGGAGCTTACTTGCT 551
Query 344 TAAGTATGGCAGAAG-GGGAAAGCCTAAGTTCTGTCCATTTCGCCTTTCAAATGATGAAT 402
|||||||| ||||| |||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 552 AAAGTATGGAAGAAGAGGGAAA-CCTAAGTTCTGCCCATTTCGCCTTTCTAATGATGAAA 610
Query 403 CTGTTTTGATATGGTTTTCGGGGAAGGAGGAGAAACATTTGAAGCTAAGTCATGTCTCCA 462
|||||||||||||||| || || || |||||||||||| ||||||| || ||||| || |
Sbjct 611 CTGTTTTGATATGGTTCTCTGGAAACGAGGAGAAACATCTGAAGCTGAGCCATGTTTCTA 670
Query 463 GGATCATATCTGGGCAGCGCACTCCTATTTTTCAAAGATATCCACGTCCCGAGAAGGAAT 522
||||||||||||| || ||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 671 GGATCATATCTGGACAACGCACTCCTATTTTTCAGAGGTATCCTCGTCCCGAGAAGGAAT 730
Query 523 ATCAATCGTTCTCACTAATATATGA-CGAGAGGTCACTGGATGTGATATGCAAAGATAAA 581
|||| ||||| |||||||||||| | |||||||| ||||||||||||| || ||||||
Sbjct 731 ATCAGTCGTTTTCACTAATATAT-AGTGAGAGGTCTTTGGATGTGATATGTAAGGATAAA 789
Query 582 GATGAGGCTGAAGTGTGGTTTAGC-GGT-TTAAAAGCCTTGATATCTCGTTGTCATCAAC 639
||||||||||| |||||||||| | ||| || || |||||||| || | ||| ||||||
Sbjct 790 GATGAGGCTGAGGTGTGGTTTA-CTGGTCTT-AAGGCCTTGATTTCGCATTGCCATCAA- 846
Query 640 GGAAA-TGGAGGACCGAATCGAGAAGTGATGGAACGCCATCCGAAGCTAATAGTCCGAGA 698
|||| |||| || ||||| |||||||| || || ||||| ||||||||||| || |||
Sbjct 847 AGAAACAGGAGAACTGAATCAAGAAGTGACGGTACACCATCTGAAGCTAATAGCCCAAGA 906
Query 699 ACATATACCCGGAGAAGCTCCCCTTTACATTCTCCATTTAGTAGCAATGAAAGTTTCCAG 758
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 907 ACATATACCCGGAGAAGCTCTCCTTTACATTCTCCATTTAGTAGCAATGACAGTTTGCAG 966
Query 759 AAGGAGGGCTCAAATCACCTTCGTCTTCACAGTCCATATGAGAGCCCGCCTAAGAATGGC 818
||||| || || |||||||||||| |||| ||||||| ||||||||||||||||||||||
Sbjct 967 AAGGATGGTTCTAATCACCTTCGTATTCATAGTCCATTTGAGAGCCCGCCTAAGAATGGC 1026
Query 819 ATTGACAAGGCATTTTCAGACATGTCGTTGTATGCAGTTCCTCCAAAAGGtttttttCCC 878
| |||||||||||||| |||||| | || |||||||||||||||||||| |||| |||
Sbjct 1027 CTCGACAAGGCATTTTCGGACATGGCTTTATATGCAGTTCCTCCAAAAGG-ATTTTACCC 1085
Query 879 C-CAGATTCGGCAACCATGTCTGTTCACTCTTTATCATCTGGAGGCTTAGATA-CACTAC 936
| ||||||| ||||| || |||| | || || |||||||||| |||| || | |
Sbjct 1086 CTCAGATTCTGCAACTATTTCTG-T---TC---AT--TCTGGAGGCTCGGATAGCA-TGC 1135
Query 937 ATGGTCACATGAAAGGAATGGGTATGGATGCTTTTAGAGTTAGTCTGTCAAGTGC-GATT 995
|||| || |||| || ||||| |||||||| |||||||||||| |||||||||| | ||
Sbjct 1136 ATGGACATATGAGGGGTATGGGCATGGATGCCTTTAGAGTTAGTATGTCAAGTGCTG-TT 1194
Query 996 AGTTCGTCGAGCCATGGTTCTGGTCACGATGATGGAGACACATTGGGAGACGTTTTCATG 1055
||||| |||||||||||||||||||| ||||||||||| |||| ||||| ||||||||
Sbjct 1195 AGTTCCTCGAGCCATGGTTCTGGTCATGATGATGGAGATGCATTAGGAGATGTTTTCATC 1254
Query 1056 TGGGGAGAAGGAATAGGCGAAGGTGTTTTGGGTGGTGGAAATTACAGAGTTGGAAGTTCG 1115
||||||||||| ||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 1255 TGGGGAGAAGGCATAGGAGAAGGTGTTTTGGGTGGTGGAAACCGTAGAGTTGGTAGTTCA 1314
Query 1116 TTGGAGATCAAAATGGATTCCTTATTGCCAAAAGCTTTAGAGTCTACTATAGTACTTGAT 1175
|| || || |||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 1315 TTTGATATAAAAATGGATTCCTTATTGCCAAAAGCTTTAGAATCTACAATAGTACTGGAC 1374
Query 1176 GTACAGAATATTGCTTGTGGTGGACAACATGCTGTCCTTGTGACAAAACAAGGAGAAAGT 1235
|| || |||||||||||||||||||| || |||||||| |||||||||||||| ||||||
Sbjct 1375 GTCCAAAATATTGCTTGTGGTGGACAGCACGCTGTCCTCGTGACAAAACAAGGGGAAAGT 1434
Query 1236 TTTTCTTGGGGAGAGGAATCTGAAGGTAGGCTTGGCCATGGTGTAGATTCCAATGTTCAA 1295
|||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| |||||
Sbjct 1435 TTTTCTTGGGGAGAGGAATCTGAAGGCAGGCTTGGCCACGGTGTTGATTCCAATATTCAA 1494
Query 1296 CATCCAAAGCTCATTGATGCCCTCAGTACCACAAATATTGAGCTTGTAGCATGTGGTGAA 1355
|| ||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1495 CAACCAAAGCTCATCGATGCACTCAACACCACAAATATTGAGCTTGTAGCATGTGGTGAA 1554
Query 1356 TACCATAGTTGTGCAGTTACTCTATCGGGGGATTTGTATACCTGGGGTAAAGGAGATTTT 1415
| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1555 TTTCATAGTTGTGCAGTTACCCTATCAGGGGATTTGTATACCTGGGGTAAAGGAGATTTT 1614
Query 1416 GGTATTCTGGGACATGGAAATGAAGTCAGTCACTGGGTCCCCAAAAGAGTAAATTTTCTG 1475
||| |||| ||||||||||||||||| |||||||||||||| || || || |||||||||
Sbjct 1615 GGTGTTCTTGGACATGGAAATGAAGTAAGTCACTGGGTCCCTAAGAGGGTTAATTTTCTG 1674
Query 1476 ATGGAAGGGATACATGTATCATCCATCGCTTGTGGACCTTACCACACAGCTGTTGTGACT 1535
|||||||||||||||||||||| || ||||||||||||||||||||||| || || ||
Sbjct 1675 CTGGAAGGGATACATGTATCATCTATTGCTTGTGGACCTTACCACACAGCAGTCGTTACC 1734
Query 1536 TCTGCTGGCCAGTTGTTTACTTTTGGTGATGGGACCTTTGGTGTTTTGGGCCATGGAGAC 1595
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1735 TCTGCTGGGCAGTTGTTTACTTTTGGTGATGGGACCTTTGGTGTTTTAGGCCACGGAGAC 1794
Query 1596 AGGAAAAGTGTTTTCATACCTAGAGAGGTAGACTCCTTGAAAGGTCTTCGCACTGTTCGG 1655
| ||||||||||||||||||| | ||||||||||| |||||||||||||||||||| |||
Sbjct 1795 AAGAAAAGTGTTTTCATACCTCGGGAGGTAGACTCTTTGAAAGGTCTTCGCACTGTCCGG 1854
Query 1656 GCAGCCTGTGGTGTATGGCACACAGCCGCAGTTGTAGAAGTCATGGTTGGGAGCTCGAGC 1715
||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||| |||
Sbjct 1855 GCAGCTTGTGGTGTATGGCACACAGCAGCAGTTGTGGAAGTAATGGTTGGGAGCTCAAGC 1914
Query 1716 TCTAGTAACTGCTCTTCAGGAAAGCTCTTTACATGGGGTGATGGTGACAAGAGTCGTCTT 1775
|| ||||| |||||||| ||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1915 TCAAGTAATTGCTCTTCTGGAAAGCTCTTTACATGGGGTGATGGTGATAAGGGTCGTCTT 1974
Query 1776 GGTCACGGTGACAAAGAACCAAAACTTGTGCCTACCTGTGTTGCAGCTCTTGTAGAACCC 1835
||||| ||| | |||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 1975 GGTCATGGTAATAAAGAACCAAAACTTGTGCCTACCTGTGTTGCTGCTCTGGTTGAACCC 2034
Query 1836 AATTTTTGTCAAGTTGCGTGCGGACATAGCCTAACAGTTGCACTGACAACATCGGGCCAT 1895
|||||||| |||||||| || || || || ||||| |||||||| |||||||| ||||||
Sbjct 2035 AATTTTTGCCAAGTTGCATGTGGGCACAGTCTAACGGTTGCACTTACAACATCAGGCCAT 2094
Query 1896 GTCTATACTATGGGTAGTCCTGTTTATGGTCAGCTTGGAAACCCACATGCAGATGGAAAG 1955
|||||||||||||| |||||||| |||||||||||||||||| |||||||||| |||||
Sbjct 2095 GTCTATACTATGGGCAGTCCTGTCTATGGTCAGCTTGGAAACTCACATGCAGACGGAAAA 2154
Query 1956 GTTCCAACCCGTGTTGAAGGTAAACTTCACAAGAGTTTTGTCGAAGAGATTGCTTGCGGT 2015
||||| |||||| ||||||||||||||||||||||||||||||||||| || || |||
Sbjct 2155 ACTCCAAACCGTGTCGAAGGTAAACTTCACAAGAGTTTTGTCGAAGAGATAGCCTGTGGT 2214
Query 2016 GCTTATCATGTTGCAGTTTTAACTTCAAGGACTGAGGTTTACACTTGGGGAAAAGGATCA 2075
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 2215 GCTTATCATGTTGCAGTTTTAACTTCGAGGACTGAGGTTTACACTTGGGGAAAGGGATCA 2274
Query 2076 AATGGTAGACTAGGCCATGGGGATGCAGATGATCTAAATTCCCCGACATTGGTTGAGTCG 2135
||||||||||| || ||||| |||| ||||||| ||||||||||||||||||||||||
Sbjct 2275 AATGGTAGACTTGGTCATGGAGATGTAGATGATAGAAATTCCCCGACATTGGTTGAGTCA 2334
Query 2136 CTGAAGGATAAACAGGTGAAAAGTATTGCCTGTGGTTCTAACTTCACCGCAGCTGTTTGC 2195
|| |||||||||||||||||||||||||||||||| |||||||||| |||||||| |||
Sbjct 2335 CTTAAGGATAAACAGGTGAAAAGTATTGCCTGTGGCACTAACTTCACAGCAGCTGTCTGC 2394
Query 2196 CTTCACAAGTGGGCATCAGGGATGGACCAGTCCATGTGTTCAGGTTGCCGTCAGCCTTTC 2255
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2395 ATTCACAGGTGGGCATCAGGGATGGACCAGTCCATGTGTTCAGGTTGCCGTCAGCCCTTC 2454
Query 2256 AATTTCAAGAGAAAGCGGCACAATTGTTATAACTGTGGACTTGTGTTTTGCCATTCTTGC 2315
| ||| || |||||| |||||||||| ||||| || ||||| ||||||||||| || |||
Sbjct 2455 AGTTTTAAAAGAAAGAGGCACAATTGCTATAATTGCGGACTAGTGTTTTGCCACTCGTGC 2514
Query 2316 ACTAATAAAAAGTCCCTGAAGGCTTGTATGGCACCGAACCCGAACAAACCATATAGAGTG 2375
|||| ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 2515 ACTAGTAAAAAGTCATTGAAGGCTTGTATGGCACCGAACCCCAACAAACCATATCGAGTG 2574
Query 2376 TGTGATAGGTGTTTCAATAAATTGAAAAAGGCCATGGAAACGGATCCATCATCTCATTCT 2435
||||||| |||||| || |||||||||||| |||||||||| ||||||||||| ||||||
Sbjct 2575 TGTGATAAGTGTTTTAACAAATTGAAAAAGACCATGGAAACAGATCCATCATCCCATTCT 2634
Query 2436 TCTTTGAGTCGAAGAGAAAGTGTCAACCAAGGATCAGATGCAATTGACAGAGATGAGAAG 2495
||| ||||| |||||| ||| | ||||| ||||||||| | ||||||| |||||| |||
Sbjct 2635 TCTCTGAGTAGAAGAGGAAGCATTAACCAGGGATCAGATCCCATTGACAAAGATGACAAG 2694
Query 2496 TTGGATACTAGATCTGACGGACAGCTAGCTAGATTCTCATTGTTGGAGCCCATGAGGCAA 2555
|| ||| ||||||| || |||||| |||||||||| ||||| |||| ||||||| |||
Sbjct 2695 TTCGATTCTAGATCCGATGGACAGTTAGCTAGATTTTCATTAATGGAATCCATGAGACAA 2754
Query 2556 GTGGACAGTCGTTCC-AAGAAAAATAAGAAATATGAATTCAATAGTAGTCGTGTCTCACC 2614
||||||||||| | ||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 2755 GTGGACAGTCGA-CATAAGAAGAACAAGAAGTATGAATTCAATAGTAGTCGTGTCTCACC 2813
Query 2615 AATACCAAGTGGAGGCTCTCACCGGGGTTCACTAAACATAACCAAGTCTTTTAACCCAAC 2674
||||| |||||| ||||||| |||||| |||| |||||| |||||||||| || |||
Sbjct 2814 CATACCGAGTGGAAGCTCTCAACGGGGTGCACTTAACATAGCCAAGTCTTTCAATCCAGT 2873
Query 2675 CTTCGGATCATCAAAAAAGTTCTTCTCAGCATCAGTTCCTGGTTCCCGAATTGTGTCTCG 2734
|| ||| ||||||| |||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 2874 ATTTGGAGCATCAAAGAAGTTCTTCTCAGCTTCTGTTCCTGGTTCTCGAATTGTGTCTCG 2933
Query 2735 AGCAACTTCACCAATATCAAGACGTCCTAGCCCACCTCGCTCAACAACGCCAACTCCCAC 2794
|||||||| |||||||| || |||||||| ||||| || ||||| || || ||||||||
Sbjct 2934 GGCAACTTCCCCAATATCGAGGCGTCCTAGTCCACCCCGGTCAACTACACCGACTCCCAC 2993
Query 2795 TCTTTCAGGACTAACTACACAAAAAATTGTCGTGGATGATACCAAGAGAACCAATGATAA 2854
||||||||||||| | |||| |||| |||| ||||||||||| |||||||||||||||||
Sbjct 2994 TCTTTCAGGACTAGCCACACCAAAATTTGTAGTGGATGATACTAAGAGAACCAATGATAA 3053
Query 2855 CCTAAGCCAGGAGGTGGTTATGCTAAGATCTCAAGTTGAAAATCTTACACGGAAGGCACA 2914
||||||||| ||||| |||| |||||||||||| ||||||| ||||||| ||||||| ||
Sbjct 3054 CCTAAGCCAAGAGGTCGTTAAGCTAAGATCTCAGGTTGAAAGTCTTACAAGGAAGGCCCA 3113
Query 2915 GCTTCAAGAAGTTGAATTGGAAAGAACAACCAAACAGCTAAAGGAGGCACTAGCAATCGC 2974
||||||||||||||| |||||||||||||||| |||||||| ||||| | ||||| |
Sbjct 3114 GCTTCAAGAAGTTGAGCTGGAAAGAACAACCAAGCAGCTAAAAGAGGCGTTGGCAATAAC 3173
Query 2975 TAGCGAAGAATC-AGCAAGATGCAAGGCAGCGAAAGAAGTGATTAAATCACTTACCGCTC 3033
|| |||||| | | |||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 3174 TAATGAAGAAACGA-CAAGATGCAAGGCAGCAAAAGAAGTGATCAAATCACTTACCGCTC 3232
Query 3034 AATTGAAAGACATGGCTGAAAGACTACCTGTTGGATCAGCTCGGACTATCAAGTCTCCT- 3092
|||| ||||||||||| |||||| |||| |||||||||||||||||| | |||||||||
Sbjct 3233 AATTAAAAGACATGGCCGAAAGATTACCCGTTGGATCAGCTCGGACTGTGAAGTCTCCTC 3292
Query 3093 -T-CTCTTAATTCATTTGGTTCCAGTCCTGATTACGTTGCCCCTTCTTCTAACACCTTAA 3150
| ||||||| |||||||||||||| |||| | | ||| ||||| || || | |||||
Sbjct 3293 CTTCTCTTAACTCATTTGGTTCCAGCCCTGGTCGCATTGACCCTT-TT--AATATCTTAA 3349
Query 3151 ACCGTCCAAACAGCCGAGAA 3170
||| |||| |||| ||||
Sbjct 3350 ACCAAGCAAATAGCCAAGAA 3369
Score = 239 bits (129), Expect = 2e-61
Identities = 185/212 (87%), Gaps = 3/212 (1%)
Strand=Plus/Plus
Query 3311 TGAACCCCGTAACGAGAAGGAATGGGTTGAACAAGATGAACCTGGTGTGTACATCACTCT 3370
|||| | || |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 3450 TGAAGCACGGAACGAGAAGGAATGGGTTGAACAAGATGAACCTGGTGTCTATATCACTCT 3509
Query 3371 CACAGCCTTAGCTGGAGGTGCAAGGGATCTCAAACGTGTCCGTTTCAGTCGGAAGCGGTT 3430
||||||||||| |||||||| || ||||||||||| ||||||||||| || || ||||
Sbjct 3510 TACAGCCTTAGCCGGAGGTGCTAGAGATCTCAAACGCGTCCGTTTCAGCCGAAAAAGGTT 3569
Query 3431 TAGCGAGAAACAAGCAGAAGAATGGTGGGCAGAGAACAGAGGAAGAGTTTACGAACAATA 3490
||| |||| |||||||||| | ||||||||||| |||||||||||||| || ||||||||
Sbjct 3570 TAGTGAGATACAAGCAGAACAGTGGTGGGCAGATAACAGAGGAAGAGTCTATGAACAATA 3629
Query 3491 CAATGTACGCATAGTCGTTGATAAATCCAGTG 3522
|||||| ||||| | ||||| ||| ||||||
Sbjct 3630 CAATGTTCGCAT-G--GTTGACAAAGCCAGTG 3658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 187975535421
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5