BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488832
Length=949
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19430.1 | Symbols: | RING/U-box superfamily protein | chr5... 1410 0.0
AT5G12310.1 | Symbols: | RING/U-box superfamily protein | chr5... 422 4e-117
> AT5G19430.1 | Symbols: | RING/U-box superfamily protein | chr5:6553825-6555831
FORWARD LENGTH=1156
Length=1156
Score = 1410 bits (763), Expect = 0.0
Identities = 837/874 (96%), Gaps = 0/874 (0%)
Strand=Plus/Plus
Query 1 TTTTTCTATTTAGTTTCGCCGCCATGAGTTCCGTTACCGAGATCGCGTCTGAGCAGCAAG 60
||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 151 TTTTTCTATCTAATTTCGCCGCCATGAGTTCCGTTACCGAGATCGTGTCTGAGCAGCAAG 210
Query 61 TGATCGACGGTATTCAGGATTTGTCTCTTCAAAATCAGGACAAAAAGAAAATCCAGGAAG 120
||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||
Sbjct 211 TGATCGACGGTATTCAGGATTTGGCCCTTCAAAATCAGGACAAAAAGAAGATCCAGGAAG 270
Query 121 AGATCCATGAGCCGAGTTTCGGGAATCATGGTGGCTGTTGTGCTATATGTTTGAGTGAAA 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 271 AGATCCATGAGCCGAGTTTCGGGAATCATGGTGGCTGTTGTGCAATATGTTTGAGTGAAA 330
Query 181 TTCCTCTTCAGGAAACTGCTATGGTGAAAGGCTGTGAACACATTTACTGTGTCACATGCA 240
|||||||||| |||||||||||||| |||||||||||||||| ||||||||| |||||||
Sbjct 331 TTCCTCTTCAAGAAACTGCTATGGTCAAAGGCTGTGAACACACTTACTGTGTGACATGCA 390
Query 241 TACTTCGTTGGGCGAGTTGCAAAGAGAGTCCTACATGCCCGCAATGTAAGCATCCTTTTG 300
||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 391 TACTTCGTTGGGCGAGTTGCAAAGAGAGTCCCACATGCCCACAATGTAAGCATCCATTTG 450
Query 301 ATTTCCTCAGTGTCCACAGGGCACTTGATGGCAGCATTGAAGATTTTCTGTTTGAGGAGA 360
|||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 451 ATTTTCTCAGTGTCCACCGAGCACTTGATGGCAGCATTGAAGATTTTCTGTTTGAGGAGA 510
Query 361 GTGTGTGCCTTCTCCTGAGAGCCTCATGGTTTGTACCATTGGATGTGGTGGAACTGGCGT 420
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 511 GTGTGTGCCTTCTCCTTAGAGCCTCATGGTTTGTACCATTGGATGTGGTGGAACAGGCGT 570
Query 421 CGTACAGCTATGGTTACCATGATGATTTTGACATCCCATGTGACTACGAGGATGAAGATG 480
|||||||| ||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 571 CGTACAGCCATGGTTACCATGATGATTTTGACATTCCTTATGACTACGAGGATGAAGATG 630
Query 481 ATGACCTTGACGAGTTTTATTTGCACGGCTCAAGACTTCGCATAGGAAATCGGAGATGGG 540
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 631 ATGACCTTGACGAGTTTTATCTGCACGGCTCAAGTCTTCGCATAGGAAATCGGAGATGGG 690
Query 541 GTGGCAATGGTTTTGTCAGATCTGGGCGTCAAGAAGCCAGGCCAGTCCAGAGATACAGTG 600
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 691 GTGGCAATGGTTTTGTCAGATCCGGGCGTCAAGAAGCCAGGCCTGTCCAGAGATACAGTG 750
Query 601 GTTCTAGTTCCAGTTCCAGTTCCAGTTCTGGGTCATCCTCAAGTGAGCCTAAGGATAAGC 660
||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 751 GTTCTGGTTCTAGTTCCAGTTCCAGCTCTGGGTCATCCTCAAGTGAGCCTAAGGATAAGC 810
Query 661 AGGTGAAGATGACAAACACAACAGGAAGGCGTGCAAAGAGGGCAATGAAGCGTGAAGCTG 720
||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 811 AGGTGAAGACGACAAACACAACAGGAAGACGTGCAAAAAGGGCAATGAAGCGTGAAGCTG 870
Query 721 CGAACAAAGCAGCGGAAGTAACTGCAGCAGCAAAGCACGAGGCCCATTTGGTTAGGTTGG 780
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 CAAACAAAGCAGCGGAAGTAACTGCAGCAGCAAAGCACGAGGCCCATTTGGTTAGGTTGG 930
Query 781 GGAGGAAGTGAGTGTGTATCTGTAAATAAATTGCACTCAAAAAGCTTCCACCTACTTCCA 840
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 GAAGGAAGTGAGTGTGTATCTGTAAATAAATTGCACTCAAAAAGCTTCCACCTACTTCCA 990
Query 841 TTACTTAGTATCACCTGTACAGCAACTAGTTTTT 874
||||||||||||| ||||||||||| ||||||||
Sbjct 991 TTACTTAGTATCATCTGTACAGCAAGTAGTTTTT 1024
Score = 65.8 bits (35), Expect = 7e-10
Identities = 41/44 (93%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 906 ACAATACTTGGACAACCATTGAATAACATATTACTCTGTTCATT 949
||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1113 ACAATACTTGGACAACCATTGGCTATCATATTACTCTGTTCATT 1156
> AT5G12310.1 | Symbols: | RING/U-box superfamily protein | chr5:3980226-3982442
REVERSE LENGTH=1373
Length=1373
Score = 422 bits (228), Expect = 4e-117
Identities = 582/746 (78%), Gaps = 52/746 (7%)
Strand=Plus/Plus
Query 80 TTTGTCTCTTCAAAATCAGGACAAAAAGAA-AATCCAGGAAGAGATCCATGAGCCGAGTT 138
|||| |||||||| ||||||| ||||||| | |||| ||| | || |||||| |||||
Sbjct 397 TTTGCCTCTTCAAGATCAGGATGAAAAGAAGACTCCA-CAAGTGTTCAATGAGCTGAGTT 455
Query 139 TCGGGAATCATGGTGGCTGTTGTGCTATATG-TTTGAGTGA-AATTCCTCTTCAGGAAAC 196
||||||| ||||| ||||||||||| || || || || | | || |||||||| |||||
Sbjct 456 TCGGGAACCATGGGGGCTGTTGTGCAATTTGCTTGGA-T-ACTATACCTCTTCAAGAAAC 513
Query 197 TGCTATGGTGAAAGGCTGTGAACACATTTACTGTGTCACATGCATACTTCGTTGGGCGAG 256
|||||||| ||||||||||| || ||||||||| || |||||||| |||||||| ||
Sbjct 514 AGCTATGGTTAAAGGCTGTGAGCATGCTTACTGTGTGACGTGCATACTCCGTTGGGCAAG 573
Query 257 TTGCAAAGAGAGTCCTACATGCCCGCAATGTAAGCATCCTTTTGATTTCCTCAGTGTCCA 316
|| ||| |||| ||||| ||||| |||||||||| ||| |||||||| |||| ||||||
Sbjct 574 TTACAAGGAGAAACCTACCTGCCCACAATGTAAGCTTCCATTTGATTTTCTCAATGTCCA 633
Query 317 CAGGGCACTTGATGGCAGCATTGAAGATTTTC-TGTTTGAGGAGAGTGTGTGCCTTCTCC 375
| | || || ||||| ||| ||||||| |||| |||| ||||||||||| ||||| ||||
Sbjct 634 CCGCGCTCTCGATGGAAGCGTTGAAGA-TTTCATGTTCGAGGAGAGTGTATGCCTCCTCC 692
Query 376 TGAGAGCCTCATGGTTTGTA-CCATTGGATGTGGTGGAACTGGCGTCGTACAG-CTATG- 432
|||| || |||||| || | ||| |||| | ||||| | || || | ||| | |||
Sbjct 693 TGAGGGCATCATGG-TTCCAGCCACTGGAAGCAGTGGAGC-GG-GT--TTCAGACAATGA 747
Query 433 --GTTACCA-TGATGATTTTGACA-T-C-CC--A-TGTGACTACGAGGATGA--A-GATG 480
|| | | | ||||||| |||| | | || | | ||| | |||||||| | || |
Sbjct 748 CAATTTCAACT-ATGATTTCGACATTCCACCTGAGTATGAGGAGGAGGATGAGGACGACG 806
Query 481 ATGACCTTGACGAGTTTTATTTGCACGGCTCAAGACTTCGCA-TAGGAAATCGGAGATGG 539
|||||||||||||||||||| |||| || ||||| ||||| | ||||||| ||||| |||
Sbjct 807 ATGACCTTGACGAGTTTTATATGCAAGGTTCAAGTCTTCG-ATTAGGAAACCGGAGGTGG 865
Query 540 GGTGGCAATGGTTTTGTCAGATCTGGGCGTCAAGAAGCCAGGCCAGT-C--CA-GAGATA 595
|||| |||||| ||||| || | || || |||||||| |||||||| | || ||| |
Sbjct 866 GGTGACAATGGATTTGTGAGGGCAGGCCGCCAAGAAGCAAGGCCAGTCCAACATAAGA-A 924
Query 596 CAGTGGT-TCTA-G-TTCCAGTTCCAGTTCCAGTTCTGGGTCATCCTCAAGTGAGCCTAA 652
| | ||| | | | ||| | | | | || | || ||||||||| ||||||| ||
Sbjct 925 CCGAGGTGGCCAGGCTTCTGGCT-CTGAACCCG-CCT-CTTCATCCTCATGTGAGCCAAA 981
Query 653 GGATAAGCAGGT-GAAGATGACAAACACAACAGGAAGGCGTGCAAAGAGGGCAATGAAGC 711
||| ||| | | | || || | || ||||||||||||||||||||||||||||||||
Sbjct 982 GGAGAAG-A-CTAGCAG-TG-C---CATAACAGGAAGGCGTGCAAAGAGGGCAATGAAGC 1034
Query 712 GTGAAGCTGCGAACAAAGCAGCGGAAGTAACT-GCAGCAGCAAAGCACGAGGCCCATTTG 770
|||||||||| |||||||| ||||||| | | ||||| |||||||| ||||||| ||||
Sbjct 1035 GTGAAGCTGCAAACAAAGCTGCGGAAGCAG-TAGCAGCTGCAAAGCATGAGGCCCTTTTG 1093
Query 771 GTTAGGTTGGGGAGGAAGTGAGTGTG 796
||||||||||| ||||||||| ||||
Sbjct 1094 GTTAGGTTGGGAAGGAAGTGACTGTG 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46416351828
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5