BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488833
Length=1163
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19440.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1736 0.0
> AT5G19440.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr5:6556420-6558342 FORWARD LENGTH=1273
Length=1273
Score = 1736 bits (940), Expect = 0.0
Identities = 1098/1173 (94%), Gaps = 16/1173 (1%)
Strand=Plus/Plus
Query 1 CAAATATACGCATTGGCCATTTCGTCCCTCCACTTAGAGAG-A--A-ACAG-ACA-CAC- 53
|||||||||||||| | ||||| |||||||||||||||||| | | |||| ||| ||
Sbjct 1 CAAATATACGCATTCGTCATTTGGTCCCTCCACTTAGAGAGAAGCAGACAGAACATAACT 60
Query 54 -AAATCTAGAAAAATGGCAAACAGTGGTGAAGGTAAAGTAGTGTGTGTAACCGGAGCCTC 112
||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 61 AAAATCGAGAAAAATGGCAAACAGTGGTGAAGGTAAAGTGGTGTGTGTAACAGGAGCCTC 120
Query 113 TGGTTACATCGCCTCATGGCTCGTCAAGTTCCTCCTTAGCCGTGGCTACACCGTTAAGGC 172
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 121 CGGTTACATCGCCTCATGGCTCGTCAAGTTCCTACTTAGCCGTGGCTACACTGTTAAGGC 180
Query 173 CTCCGTCCGTGA-CCCAAGTGATCCAAAAAAGACACAACATTTAGTTTCACTGGAAGGTG 231
|||||||||||| ||| |||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 181 CTCCGTCCGTGATCCC-AGTGATCCGAAAAAGACACAACACTTAGTTTCACTAGAAGGTG 239
Query 232 CAAAGGAGAGACTTCACTTGTTCAAAGCAGACCTTTTGGAAGAAGGTTCTTTCGATTCTG 291
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 240 CAAAGGAAAGACTTCACTTGTTCAAAGCAGACCTTTTGGAACAAGGTTCTTTCGACTCTG 299
Query 292 CTATTGATGGCTGCCATGGAGTTTTCCACACTGCTTCCCCATTTTTTCATGATGTCAAAG 351
|||||||||| |||||||||||||||||||||||||| ||||||||| |||||| |||||
Sbjct 300 CTATTGATGGTTGCCATGGAGTTTTCCACACTGCTTCTCCATTTTTTAATGATGCCAAAG 359
Query 352 ACCCACAGGTTGAGCTTATTGATCCTGCAGTCAAGGGGACACTTAACGTTTTGAATTCTT 411
||||||||| ||| |||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 360 ACCCACAGGCTGAACTTATTGATCCTGCGGTCAAGGGGACGCTTAACGTTTTGAATTCGT 419
Query 412 GCACCAAAGCATCTTCGGTTAAAAGGGTTGTTGTTACCTCCTCCATGGCAGCCGTTGCTT 471
|| ||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||| ||
Sbjct 420 GCGCCAAAGCCTCTTCGGTTAAGAGGGTTGTTGTAACCTCCTCCATGGCTGCCGTTGGTT 479
Query 472 ACAATGGAAAACCACGCACACCTGATGTTACCGTCGATGAAACTTGGTTCTCTGATCCTG 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACAATGGAAAACCACGCACACCTGATGTTACCGTCGATGAAACTTGGTTCTCTGATCCTG 539
Query 532 AGCTTTGCGAGACCTCCAAGATGTGGTATGTTCTATCCAAGACTTTGGCGGAGGATACCG 591
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct 540 AGCTTTGCGAGGCCTCCAAGATGTGGTATGTTCTATCCAAGACTTTGGCGGAAGATGCAG 599
Query 592 CTTGGAAACTTGCTAAAGAGAAAGGCTTAGACATTGTTACTATTAACCCGGCTATGGTGA 651
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTTGGAAACTCGCTAAAGAGAAAGGCTTAGACATTGTTACTATTAACCCGGCTATGGTGA 659
Query 652 TCGGTCCTCTCCTACAGCCAACTCTGAACACGAGTGCTGCTGCTGTACTAAACTTAATAA 711
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
Sbjct 660 TCGGTCCTCTCCTACAGCCAACTCTGAACACGAGTGCTGCTGCTATATTAAACTTAATCA 719
Query 712 ATGGTGCAAAGACTTTCCCCAACTCGAGTTTCGGATGGGTTAATGTAAAAGACGTAGCCA 771
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 720 ATGGTGCAAAGACTTTCCCAAACTTGAGTTTCGGATGGGTTAATGTAAAAGACGTAGCCA 779
Query 772 ATGCGCACATCCAAGCATTTGAGGTCCCTTCAGCTAATGGACGTTATTGTTTGGTCGAGC 831
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 780 ATGCGCACATCCAAGCATTTGAGGTCCCTTCAGCTAATGGGCGTTATTGTTTGGTCGAGC 839
Query 832 GTGTCGTTCACCACTCCGAGATTGTTAACATTCTACGTGAGCTTTACCCAAATCTCCCAC 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTGTCGTTCACCACTCCGAGATTGTTAACATTCTACGTGAGCTTTACCCAAATCTCCCAC 899
Query 892 TCCCTGAAAGGTGTGTGGACGAGAATCCCTACGTGCCAACATATCAAGTGTCCAAGGAGA 951
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 900 TACCTGAAAGGTGTGTGGACGAGAATCCCTACGTGCCAACGTATCAAGTGTCCAAGGATA 959
Query 952 AAACGAGGAGCCTTGGCATAGACTACATACCTTTGAAGGTTAGCATCAAGGAGACCGTCG 1011
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 960 AAACGAGGAGCCTTGGCATAGACTACATACCCTTGAAGGTTAGCATCAAGGAGACCGTCG 1019
Query 1012 AGTCCTTGAAGGAGAGAGGTTTCATACACTTCTGAGAAAG-ATTTGAGCCAATGGATTCA 1070
||||||||||||| | ||||||| ||| ||||||||||| ||||||||||||||||| |
Sbjct 1020 AGTCCTTGAAGGAAAAAGGTTTCGCACAGTTCTGAGAAAGCATTTGAGCCAATGGATTTA 1079
Query 1071 ATCCATATTAGATAAAGTATTTGGAACACTATATCAAAAAACTATAATATTTGGAACATG 1130
||||| |||||||||||||||||||| ||||| ||| ||| || | |||||||||||||
Sbjct 1080 ATCCAGATTAGATAAAGTATTTGGAAGACTATTTCAGAAA--TA-A-TATTTGGAACATG 1135
Query 1131 TCAACGTTCCTTAAGGAGAGATTAGTATGTTCT 1163
|||| |||| | ||||||| |||||||||||||
Sbjct 1136 TCAATGTTC-TCAAGGAGATATTAGTATGTTCT 1167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57078019665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5