BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488838

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G19473.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fam...   760    0.0  


> AT5G19473.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) family 
protein | chr5:6569194-6570873 FORWARD LENGTH=567
Length=567

 Score =  760 bits (411),  Expect = 0.0
 Identities = 473/502 (94%), Gaps = 7/502 (1%)
 Strand=Plus/Plus

Query  1    CTCCTCCTAGTCATGAACACCTTCTTCAATGTTTAAGAACCTCTTTCTTCTAAACCAAGC  60
            |||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct  4    CTCCTCCTCGTCATGAACACCTTCATCAATGTTTAAGAACATCTTTCTTCTAAACCAAGC  63

Query  61   AAGATCTATTTATGGATAAGAGAAGGGAGAATGCTGGATGGACTCCAGTTCCACAGTTCG  120
            || |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct  64   AATATCTATTTATGGATAAAAGAAGGGAGAATGCTGCATGGACTCCAGTTCCACAGTTCG  123

Query  121  GAGGGTGGGACCAAAAAGGACCAAATGATGCTACAAACTACTCGGTTGTCTTCTCCCAAG  180
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||
Sbjct  124  GAGGGTGGGACCAAAAAGGACCAAATGATGCTACAAACTACTCGGTTGTCTTTTCTAAAG  183

Query  181  CTCGCGCTAACAGGAAGCAGAACAAAGCTGTTGTGAGACATTCTAGTTTGGGAAGCGAAC  240
            ||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct  184  CTCGCGCAAACAGGAAGCAGAACAAAGCTGGTGTAAGACATTCTAGTTTGGGAAGCGAAC  243

Query  241  AAGAACTCATGGCAAGTGTTCGTCGGAACCACCAGCAACTTCACCATCGCCATGAAACCC  300
            |||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct  244  AAGAACTCATGGTAAGTGTTCGTCGCAACCACCAACAACTTCACCATCGCCATGAAACTC  303

Query  301  AAGATGATGACCCTGTCATGAAGAAGAAGAGGATCTTGACCTACATAAATTGTTGTATCA  360
            |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct  304  AAGACGATGACCCTGTCATGAAGAAGAAGAGGATCTTGACCTACATTAATTGTTGTATAA  363

Query  361  GGCCAAACTAGGGCCTTGTTCTTCTACAAAGTCGGAATCTTTCTCTCTTCAGCGATATAG  420
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  364  GGCCAAACTAGGGCTTTGTTCTTCTACAAAGTCGGAATCTTTCTCTCTTCAGCGATATAG  423

Query  421  CAAATATTTGTCTCA-GTGTGTAAAGATCGAGATTAGTGTAACGTTTCTGTAATCTTCTT  479
            |||||||  |||||| ||||||||||| | || | |||||||||||||||||||||||||
Sbjct  424  CAAATAT--GTCTCAAGTGTGTAAAGA-C-AG-T-AGTGTAACGTTTCTGTAATCTTCTT  477

Query  480  TATCACaaaaaaaaaaaaaaaa  501
            ||||||| | ||||||||||||
Sbjct  478  TATCACACACAAAAAAAAAAAA  499



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23911453972


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5