BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488840
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19480.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1258 0.0
> AT5G19480.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G12230.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:6571501-6573453 FORWARD LENGTH=1072
Length=1072
Score = 1258 bits (681), Expect = 0.0
Identities = 812/872 (93%), Gaps = 21/872 (2%)
Strand=Plus/Plus
Query 264 AAAGATATGGAATCAGAGAGCGTTAAGTTTGGAGGTCCAAGAGAATTAGGTGGTGCACTA 323
||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 217 AAAAATATGGAATCAGAGAGCGTTAAGTTTGGAGGTCCTAGAGAATTGGGTGGTGCACTA 276
Query 324 GATCTTATAACCCAATACAAGTTGTTGCCACACCATGAATTCTTCTGCAAGAGATCACTT 383
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 277 GATCTTATAACACAATACAAGTTGTTGCCACACCATGAATTCTTTTGCAAGAGATCACTT 336
Query 384 CCAGAGTCACTTTCAGATGCTCATTATCTTCATAATTTGGTTGGAGACACCGAGATTAGA 443
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 337 CCAGAGTCACTGTCAGATGCTCATTATCTTCATAATTTGGTTGGAGACACAGAGATTAGA 396
Query 444 AAAGGAGATGGAATGCAATTGGATCAGCTTATTCCCAATGCATCACTTAGTACCCGAGAT 503
|||||||| ||||||||||| |||||||||||||| |||||||||||||||| |||||||
Sbjct 397 AAAGGAGAAGGAATGCAATTAGATCAGCTTATTCCTAATGCATCACTTAGTAGCCGAGAT 456
Query 504 TCCAATGCTCGTATTCAACCTTTTGTT-TTAGATGAACTTAAGGAGGCTTTTGAGCTTAA 562
| |||||||| || |||||||||||| || |||||||||||||||||||||||||||||
Sbjct 457 ACGAATGCTCGCATCCAACCTTTTGTTCTT-GATGAACTTAAGGAGGCTTTTGAGCTTAA 515
Query 563 TGATACAGCTCCTGTTGAATTGCCTCCTGCAGAGAAGGGAGCTCCTACCACGGCCTCAAA 622
||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||
Sbjct 516 TGATACAGCTCCTGTTGAATTGCCTCCAGCAGAGAAGGGAGCTCCTACCACTGTATCAAA 575
Query 623 ATCAAAAAGTGAGTCGAAAGATAAGGACAGGAAGCATAGAAAACACAAAGAAAAGAATAA 682
||||||||||||||| ||||||||||| ||||| ||||||||||| ||||| |||||
Sbjct 576 ATCAAAAAGTGAGTCAAAAGATAAGGATAGGAAACATAGAAAACATAAAGACAAGAA--- 632
Query 683 GGAGAAAGATAGGGAACATAAGAAGCACAAGCACAAGCATAAAGATAGGAGCAAAGATAA 742
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 633 GGAGAAAGATAGGGAACATAAGAAGCACAAGCACAAGCATAAAGATAGGATCAAAGATAA 692
Query 743 GGATAAAGACAAGGATCGAGACAGAAAGAAGGACAAAAGTGGGCACCATGATAAGAAAAG 802
||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||
Sbjct 693 GGATAAAGACAAGGATCGAGACAAAAAGAAGGAAAAAAGTGGACACCATGATAAGAAAAG 752
Query 803 GAAGAACAATGGGACTGAAGAT-CTTGATGACGTTCAGAGGCACAAAAAGAGTAAGCATA 861
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 753 GAAGAACAATGGGACTGAAGATGCT-GATGACGTTCAGAGGCACAAAAAGAGTAAGCATA 811
Query 862 AGAGCTCAAGGCTTGATGAGATGGGAGCGATGTAGGTTGGAGGCTGAAGCCGGGGACACT 921
||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 812 AGAGCTCAAAGCTTGATGAGATGGGAGCGATGTAGGTTGGAGGCTGAAGCCGTGCACACT 871
Query 922 CTCATTTTTGTATTGCACACCCAAGGTGTCATGGAGAGGTTTAGAAGCAGCTAACTTTGT 981
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 872 TTCATTTTTGTATTGCACACCCAAGGTGTCATGGAGAGGCTTAGAAGCAGCTAACTTTGT 931
Query 982 TAGGTTTAATCTCTAAATAAAAATTTCACTGTGGGGGAAGTTAGGAGGGGTGAAGCAACG 1041
||||||||||||||||||||||||| || |||||| ||||||||||||||| ||||||||
Sbjct 932 TAGGTTTAATCTCTAAATAAAAATTGCATTGTGGGAGAAGTTAGGAGGGGTTAAGCAACG 991
Query 1042 AAA-GTTCGCCAAGAAGGCAAGAAGAATCACACAACTTGTACATTTTGTTAC--TTCAAA 1098
||| ||||||||||||| || ||||| | ||||||||||||||||| || |||
Sbjct 992 AAAAGTTCGCCAAGAAG--AA------TCACA-A-CTTGTACATTTTGTTACACTTTAAA 1041
Query 1099 ACAAGCTATGAAGTTTATCCATTCTCGTGACT 1130
|||||||||||||||||| ||||||||||||
Sbjct 1042 -CAAGCTATGAAGTTTATCTATTCTCGTGACT 1072
Score = 152 bits (82), Expect = 7e-36
Identities = 99/107 (93%), Gaps = 1/107 (1%)
Strand=Plus/Plus
Query 1 AGAAGAGGAAGAAATCGCGATTTTATAACGCCATTGTTTGAGGAATCACC-AATCCTTTC 59
|||||| ||||||||||||||||||||||||||||||||||||| | || ||||| |||
Sbjct 8 AGAAGAAAAAGAAATCGCGATTTTATAACGCCATTGTTTGAGGAAACTCCTAATCCATTC 67
Query 60 TCAAACCCTAATTACTTCCTTGTCGAACGTTCCTCGATATTCCCGCG 106
|||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 68 TCAAACCCTAGTTACTTCCTTCTCGAACGTTCCTCGATATTCCCGCG 114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58935439830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5