BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488841
Length=1807
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19485.1 | Symbols: | transferases;nucleotidyltransferases ... 2630 0.0
> AT5G19485.1 | Symbols: | transferases;nucleotidyltransferases
| chr5:6573592-6576490 REVERSE LENGTH=1824
Length=1824
Score = 2630 bits (1424), Expect = 0.0
Identities = 1711/1841 (93%), Gaps = 53/1841 (3%)
Strand=Plus/Plus
Query 1 AACGACCCGTCGGATCCAAAAGTAAGAGAGAAGCGGGTTTAATTGATA----C--CGTCT 54
|||||||||||||||||||||| |||| | ||||||||| |||||||| | |||||
Sbjct 3 AACGACCCGTCGGATCCAAAAGAAAGAAACAAGCGGGTTAAATTGATATCGTCTTCGTCT 62
Query 55 -TCG--TCT-AAAATCAAAA-CCC------CAGAAACCTCTCTTCTTCGTC-TC-CTCAT 101
|| ||| |||||||||| ||| ||||||||||||||||||||| || ||| |
Sbjct 63 ACCGTTTCTCAAAATCAAAACCCCAGAAAGCAGAAACCTCTCTTCTTCGTCTTCTCTCGT 122
Query 102 CAATTCAGTTGCGATAATGGATTTTCAGGTCGTGATTCTCGCCGGTGGATTCTCCAGTAA 161
|||||||| ||||| ||||||||| |||||||||||||| ||||| |||||||| ||| |
Sbjct 123 CAATTCAGCTGCGACAATGGATTTCCAGGTCGTGATTCTAGCCGGCGGATTCTCTAGTTA 182
Query 162 TCTTGTTCCCTTAGTCTCCAAGGAAGTTCCTAAGGCGTTGCTTCCGGTAGCGAATCGTCC 221
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 183 TCTTGTTCCCTTAGTCGCCAAGGAAGTTCCTAAGGCGTTGCTTCCCGTAGCGAATCGTCC 242
Query 222 GGTGTTATCTTTCGTTTTGGATCTGCTCGAGAGCAATAATCTCAAGGATCTGATCGTCGT 281
|||||| |||| |||| ||||||| |||||||| | ||||||||||||||||||||||||
Sbjct 243 GGTGTTGTCTTACGTTCTGGATCTTCTCGAGAGTAGTAATCTCAAGGATCTGATCGTCGT 302
Query 282 TGTTGAAGGAGAAGATGCCGCATTGAAAGTTGGTGGATGGATATCTTCTGCTTGTGTTGA 341
||||||||| |||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 303 TGTTGAAGGGGAAGATGCTGCTTTGAAAGTTGGTGGATGGATTTCTTCTGCTTGTGTTGA 362
Query 342 TCGTTTACATGTTGAGGTTGCTGCTGTTGCTGAGAATGTTGGAACTGCTGGGGCACTCAG 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TCGTTTACATGTTGAGGTTGCTGCTGTTGCTGAGAATGTTGGAACTGCTGGGGCACTCAG 422
Query 402 GGCAATTGCACACCACTTAACTGCCAAAGACATTTTGATTGTAAGTGGAGACATTGTTTC 461
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 423 GGCAATTGCACACCACTTAACTGCCAAAGACATTTTGATCGTAAGTGGAGACATTGTTTC 482
Query 462 TGATATTCCTCCTGGTGCTGTTGCCGCCACTCATAGAAGGCATGATGCAGCAGTCACTGT 521
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 483 TGATATTCCTCCTGGTGCTGTTGCCGCCACTCATAGAAGGCATGATGCAGCAGTGACTGT 542
Query 522 AATGCTTTGTGCTCAACCTGTCAGTGGGCCATCAGAATCCGGGGGTTCTGGTGGGAAAGA 581
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 543 TATGCTTTGTGCTCAACCTGTCAGTGGGCCATCAGAATCAGGAGGTTCTGGTGGGAAAGA 602
Query 582 TAAAACCAAAAAACCTGCTTGCGATGATATCATAGGGCTTGATTCCTTGAAACAATTCTT 641
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 603 TAAAACCAAAAAACCTGCTTGCGATGATATCATAGGGCTTGATTCCTTGAAACAGTTCTT 662
Query 642 GTTATACATAGCCAAAGGGGCTGAGATTAAGAAAGATACGCGAGTAAAAAAGAGCATTCT 701
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 663 GTTATACATAGCCAAAGGTACTGAGATTAAGAAAGATACCCGAGTAAAAAAGAGCATTCT 722
Query 702 CTGTGCGGCTGGCAAGATGGAAATTCGATCAGATCTGATGGATTCTCATATATATGCCTT 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 CTGTGCGGCTGGCAAGATGGAAATTCGATCAGATCTGATGGATTCTCATATATATGCCTT 782
Query 762 CAAGAGATCAGTTCTGCAGGAAGTTTTGGATCAAAAACCTGCTTTTCGGAGCCTAAAAGA 821
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 783 CAAGAGAGCAGTTCTGCAGGAAGTTTTGGATCAAAAACCTGCTTTTAGGAGCCTAAAACA 842
Query 822 GGATGTACTACCATATCTTGTTCGTACACAGCTGAGATCAGA-GATCTTCTCTGACCAAA 880
|||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 843 GGATGTACTACCGTATCTTGTTCGTACACAGCTGAGATCAGATG-TCTTCTCTGACCAAA 901
Query 881 ATAATGTAGAAGAAAACGGAAATGGAAATGGAAAGAATAATATGCAGAACAACGAGGTGG 940
||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct 902 GTAATGTAGAAGAAAATGGGAATGGAAATGGAAAAAATAATATGCAGAACAACGAGGTGG 961
Query 941 TCTTGTCTCAAATTCTCTCCAACGCATCTTTGCCAAGCTTTCATCAAGTCTATGAATCAG 1000
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 962 TCTTGTCTCAAATTCTCTCCAACGCATCCATGCCAAGCTTTCATCAAGTCTATGAATCAG 1021
Query 1001 GTCTTGATAGCCGAAAAACCAATAAATGCTGTGTTTATATAGCGGATGAAAGTAAATATT 1060
|||| | || ||| |||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1022 GTCTGGGTACCCGGAAAACCCATAAATGCTGTGTTTATATAGCGGATGAAAGTAAGTATT 1081
Query 1061 TCGTCCGCTTGAATAGCATTCAAGCCTTTATGGACGTAAACAGAGATGTTATTGGTG-AT 1119
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1082 TCGTCCGCTTGAATAGCATTCAAGCCTTCATGGACGTAAACAGAGATGTTATTGGTGAAT 1141
Query 1120 GCAAACCACCTATCTGGATACTCCTTTTCTGCTCATCACAACATTGTCCACCCATCAGCT 1179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 -CAAACCACCTATCTGGATACTCCTTTTCTGCTCATCACAACATTGTCCACCCATCAGCT 1200
Query 1180 GAGCTTGGATCGAAAACCACAGTTGGACCTCATTGTATGCTTGGAGAAGGCTCTCAAGTC 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GAGCTTGGATCGAAAACCACAGTTGGACCTCATTGTATGCTTGGAGAAGGCTCTCAAGTC 1260
Query 1240 GGTGATAAATGCAGTGTCAAAAGATCTGTAATTGGGAGACATTGCCGGATAGGCTCCAAT 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GGTGATAAATGCAGTGTCAAAAGATCTGTAATTGGGAGACATTGCCGGATAGGCTCCAAT 1320
Query 1300 GTGAAGATTGTTAATTCAGTTGTGATGGACCATGCCACAATTGGAGACGGATGTTCAATA 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GTGAAGATTGTTAATTCAGTTGTGATGGACCATGCCACAATTGGAGACGGATGTTCAATA 1380
Query 1360 CAGGGCTCAGTCATTTGCAGTAACGCACAACTTCAAGAGCGTGTTACTCTGAGAGACTGC 1419
|| ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 1381 CAAGGCTCAGTCATTTGCAGCAACGCACAGCTTCAAGAGCGTGTTACTCTAAGAGACTGC 1440
Query 1420 CAAGTGGAAGCAGGGTATGTAGTTTGTGCCGGGAGTGAGCACAAGGGAGAGACCTTTGCT 1479
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1441 CAAGTGGAAGCAGGGTATGTTGTTTGTGCCGGGAGTGAGCACAAAGGAGAGACCTTTGCT 1500
Query 1480 AGAAAATGAAAAGGAAGGTTAAGCATATGAATGAGGAGGTCACATCTTGGAAC--TTTTT 1537
|||||||||||||||||| |||||| | | ||||| |||||||||||||| |||||
Sbjct 1501 AGAAAATGAAAAGGAAGGATAAGCA-A--A-TGAGG---TCACATCTTGGAACGCTTTTT 1553
Query 1538 CAA--TGAAAAGCAGCATTTCTTAGTCGTTCGTTTGGTATGAGAGAAGAGTGTGAAGGAT 1595
|| |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1554 TAAAATGAAAAGCAGCATTACTTAGTCATTCGTTTGGTAGGAGAGAAGAGTGTGAAGGAT 1613
Query 1596 TGGAAAGTTCCCCACCCTAAGGGTTTTGTACTTTAGTTGATTAAAAGTTTGAGATTTTCC 1655
||||||||| ||||| |||||||||||| | | ||||| |||||||||||||||
Sbjct 1614 TGGAAAGTTTCCCAC--TAAGGGTTTTGT--T---G---ATTAAGAGTTTGAGATTTTCC 1663
Query 1656 GTTAGTATGTTTTGCTGATAGAGTTTAATCTTTTACTGTTCATTACATATATATGACGTT 1715
|||||||| |||| |||||||||||| ||||||| || ||||||||||||| |||| ||
Sbjct 1664 GTTAGTATCTTTTACTGATAGAGTTTGATCTTTTGCTATTCATTACATATACATGAAGTC 1723
Query 1716 TTGAAACTCTTTGTCAGCCACTGACCCTTC-CTCTCT-CCGTTGGTT-T-TC-C-T--GT 1767
||||||| |||||||||||||||||||||| |||| | ||||||||| | | | | ||
Sbjct 1724 TTGAAACACTTTGTCAGCCACTGACCCTTCTCTCTGTTCCGTTGGTTATATTACATATGT 1783
Query 1768 CtttttttGTTCTCCTCATTGTT-ACTCTTTTGTTCGAGAT 1807
||||||||||||| |||||| || |||||||||||||||||
Sbjct 1784 CTTTTTTTGTTCTTCTCATTATTTACTCTTTTGTTCGAGAT 1824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89407170645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5