BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488844
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19510.1 | Symbols: | Translation elongation factor EF1B/r... 1360 0.0
AT5G12110.1 | Symbols: | Glutathione S-transferase, C-terminal... 497 6e-140
AT5G19500.1 | Symbols: | Tryptophan/tyrosine permease | chr5:6... 399 2e-110
> AT5G19510.1 | Symbols: | Translation elongation factor EF1B/ribosomal
protein S6 family protein | chr5:6581658-6583248
REVERSE LENGTH=982
Length=982
Score = 1360 bits (736), Expect = 0.0
Identities = 860/921 (93%), Gaps = 4/921 (0%)
Strand=Plus/Plus
Query 18 AGTCTCGCTGATCTCTCTCCCTCCCTCACACCCTAAAAAGCAGCAACAATGGCCGTTACC 77
|||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 64 AGTCTCTCTGATCTCTCTACCTCCCTCACACCCTAAAACTCAGCAACAATGGCCGTTACC 123
Query 78 TTTTCAGATCTACACACAGAGGAGGGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAA 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 TTTTCAGATCTACACACAGAGGAGGGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAA 183
Query 138 ACCTACATCTCCGGAGATCAATTGTCTGTGGATGATGTTAAGGTTTACGCTGCTGTTCCA 197
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 184 ACCTACATCTCCGGAGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCA 243
Query 198 GTGAAACCCAGCGATGCTTTCCCTAATGCTAGCAAGTGGTACCAGTGTGTGGCTTCCCAT 257
||||||||||||||||| ||||| |||||||||||||||||| ||| |||||||||||
Sbjct 244 GTGAAACCCAGCGATGCCTTCCCCAATGCTAGCAAGTGGTACGAGTCCGTGGCTTCCCAA 303
Query 258 CTTGCTAAAAGTTTCCCTGGAAAGGCCGTTGGAGTGCAAATCGGTGGCTCTGCTGCTGCT 317
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 304 CTTGCTAAAAGTTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTGGCTCTGCTGCTGCT 363
Query 318 CCTCCAGCTGTGGAGGCTGAGGCACCTACAGCTGCAGCTGATGATGATGATGACATTGAT 377
|||||||||| || |||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 364 GCTCCAGCTGTTGAAGCTGAGGCACCTGCAGCTGCAGCTGATGATGATGATGACATGGAT 423
Query 378 CTGTTTGGTGATGAGACTGAGGAGGAAAAGAAAGCTGCAGAGGAGAGGGAGGCTGCTAAG 437
|| |||||||| ||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 424 CTCTTTGGTGACGAGACCGAAGAAGAAAAGAAAGCTGCAGAGGAGAGGGAGGCTGCTAAG 483
Query 438 AAGGACACCAAGAAGCCTAAAGAGAGTGGAAAGTCCTCTGTGCTTATGGATGTTAAGCCA 497
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 484 AAGGACACCAAGAAGCCTAAAGAGAGTGGAAAGTCTTCTGTGCTCATGGATGTTAAGCCA 543
Query 498 TGGGATGATGAGACCGACATGAAGAAACTGGAAGCGGCTGTTCGTGCTGTTGA-ATTGCC 556
||||||||||| |||||||||||||||||||||| ||||||||||| |||||| || |||
Sbjct 544 TGGGATGATGAAACCGACATGAAGAAACTGGAAGAGGCTGTTCGTGGTGTTGAGAT-GCC 602
Query 557 CGGTCTTTTATGGGGAGCTTCAAAACTTGTACCAGTTGGTTACGGGATCAAGAAACTCAC 616
|||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 603 TGGTCTTTTCTGGGGAGCCTCAAAACTTGTACCAGTTGGTTATGGGATCAAGAAACTCAC 662
Query 617 GATTATGCTCACGATTGTTGATGACCTCGTGTCCCCAGACAACCTCATTGAAGACTTTCT 676
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 663 AATTATGTTCACGATTGTTGATGACCTCGTGTCCCCGGACAACCTCATTGAAGACTTCCT 722
Query 677 CACCTCAGAGCCTAACAACGAGTACATCCAGAGTTGTGACATTGTCGCATTCAACAAGAT 736
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 723 CACCTCAGAGCCTAACAACGAGTACATCCAGAGTTGTGACATTGTCGCTTTCAACAAGAT 782
Query 737 TTAGAGACTTCAAACCTCTCCTTACAAAAACATAtttggttttcaagttttgttttcgtt 796
|||||||||||||| ||||||||| |||||||| || ||||||||||||||||||||
Sbjct 783 TTAGAGACTTCAAATTTCTCCTTACCGAAACATATCTGAATTTCAAGTTTTGTTTTCGTT 842
Query 797 tgtgttgtttaccgagatgtttcttttctagttgCAAGACCTCTTTCATGTTACAATAAC 856
||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 843 TGTGTTGTTTACCGAAATGTTTCTTTCCTAGTTGCAAGACCGCTTTCATGTTACAATAAC 902
Query 857 ACTAAATTATCAATGCTTTCTATTCCGTTGCATTATTGTTAAGAA-CTACTTAGGTACTT 915
|||||||| |||||| || |||||||||||||| ||||||||||| | | |||| |||||
Sbjct 903 ACTAAATTTTCAATGGTTACTATTCCGTTGCATCATTGTTAAGAAAC-ATTTAGATACTT 961
Query 916 TGAAAAATTTTCTACTACTTC 936
||| ||||| |||| ||||||
Sbjct 962 TGACAAATTCTCTATTACTTC 982
> AT5G12110.1 | Symbols: | Glutathione S-transferase, C-terminal-like;Translation
elongation factor EF1B/ribosomal protein
S6 | chr5:3914468-3915968 FORWARD LENGTH=938
Length=938
Score = 497 bits (269), Expect = 6e-140
Identities = 573/714 (80%), Gaps = 44/714 (6%)
Strand=Plus/Plus
Query 56 AGCAGCAACAATGGCCGTTACCTTTTCAGATCTACACACAGAG-GAGGGTGTCAAATCCG 114
||| ||| ||||||| ||||| ||||| ||||| ||||||||| || ||| ||||| ||
Sbjct 6 AGCTGCATCAATGGCGGTTACATTTTCTGATCTCCACACAGAGCGA-GGTCTCAAAACCC 64
Query 115 TGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGGAGATCA-ATTGTCTGTGGATGAT 173
| ||||| || |||||||| ||||| ||||||||||| ||||| || || || ||||||
Sbjct 65 TCGAGGAACATCTCGCCGGTAAAACGTACATCTCCGGCGATCAGCTT-TCGGTTGATGAT 123
Query 174 GTTAAGGTTTACGCTGCTGTTCCAGT-GA-AACCCA-GCGAT-GCTTTCCCTAATGCTAG 229
|| |||||||||||||| | | | | || || ||| | ||| | |||||| ||||||||
Sbjct 124 GTGAAGGTTTACGCTGCCG-T--ATTGGAGAATCCAGGTGATGGTTTTCCC-AATGCTAG 179
Query 230 CAAGTGGTACCAGTGTGTGGCTTCCCATCTTGCTAAAAG-TTTCCCTGGAAAGGCCGTTG 288
|||||||||| | | ||| ||||| || || |||||||| |||||| ||||| || | |
Sbjct 180 CAAGTGGTACGATTCTGTTGCTTCTCACCTAGCTAAAAGTTTTCCCGGGAAA-GCAGACG 238
Query 289 GAGTGCA-AATCGGTGGCT-CTGCTGCTGCTCC-TC--CAGCT-GT--GGAGGCTGAGGC 340
||||| | | | ||||| | || |||| |||| || |||| | | ||||||
Sbjct 239 GAGTG-AGAGTTGGTGG-TGGTGTTGCTCCTCCATCTGAAGCTCATCCACATACTGAGGA 296
Query 341 ACCTACAGC---T-G-CA-GCTGATGATGATGATGACATTGATCTGTTT-GGTGATGAGA 393
|||| | || | | | | ||||||||||||||| |||||||| ||| | ||||||||
Sbjct 297 ACCTGCTGCTGATGGTGATGGTGATGATGATGATGATATTGATCT-TTTCGCTGATGAGA 355
Query 394 CTGAGGAGGA-AAAGAAAGCTGCAGAGGAGAGGGAGGCTGCTAAGAAGGACACCAAGAAG 452
|||| || || ||| |||||||| || ||||| || ||||||||||| || || ||||||
Sbjct 356 CTGAAGATGAGAAA-AAAGCTGCTGAAGAGAGAGAAGCTGCTAAGAAAGATACTAAGAAG 414
Query 453 CCTAAAGAGAGTGGAAAGTCCTCTGTGCTTA-TGGATGTTAAGCCATGGGATGATGAGAC 511
|||||||||||||||| || ||||||| || |||| || || |||||||||||||| ||
Sbjct 415 ACTAAAGAGAGTGGAAAATCTTCTGTGC-TACTGGAAGTAAAACCATGGGATGATGAAAC 473
Query 512 CGACATGAAGAAACTGGAAGCGGCTGTTCGT-GCTGTTGA-ATTGCCCGGTCTTTTATGG 569
|||||||||||| | |||| ||||||||| | |||| | | |||| |||||| ||||
Sbjct 474 CGACATGAAGAAGTTAGAAGAAGCTGTTCGTAG-TGTTCAGA-TGCCAGGTCTTACATGG 531
Query 570 GGAGCTTCAAAACTT-GTACCAGTTGGTTACGGGATCAAGAAACTCACGATTATGCTCAC 628
|||||||| ||| || ||||| |||||||||||||| ||||||||||| || ||| | ||
Sbjct 532 GGAGCTTCGAAA-TTGGTACCTGTTGGTTACGGGATAAAGAAACTCACAATCATGATGAC 590
Query 629 GATTGTTGATGACCTCGTGTCCCCAGACAACCTCATTGAAGACTTTCTCACCTCAGAGCC 688
|||||||||||||| ||||| |||||||||||||||||| |||||||||||||||
Sbjct 591 AATTGTTGATGACCTTGTGTCTGTGGACAACCTCATTGAAGACCATCTCACCTCAGAGCC 650
Query 689 TAACAACGAGTACATCCAGAGTTGT-GACATTGTCGCATTCAACAAGATTTAGA 741
|||||||||||||||||| ||| || || |||||||| || |||||||||||||
Sbjct 651 TAACAACGAGTACATCCAAAGT-GTCGATATTGTCGCTTTTAACAAGATTTAGA 703
> AT5G19500.1 | Symbols: | Tryptophan/tyrosine permease | chr5:6578952-6581945
FORWARD LENGTH=1831
Length=1831
Score = 399 bits (216), Expect = 2e-110
Identities = 265/289 (92%), Gaps = 2/289 (1%)
Strand=Plus/Minus
Query 649 CCCCAGACAACCTCATTGAAGACTTTCTCACCTCAGAGCCTAACAACGAGTACATCCAGA 708
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1831 CCCCGGACAACCTCATTGAAGACTTCCTCACCTCAGAGCCTAACAACGAGTACATCCAGA 1772
Query 709 GTTGTGACATTGTCGCATTCAACAAGATTTAGAGACTTCAAACCTCTCCTTACAAAAACA 768
|||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1771 GTTGTGACATTGTCGCTTTCAACAAGATTTAGAGACTTCAAATTTCTCCTTACCGAAACA 1712
Query 769 TAtttggttttcaagttttgttttcgtttgtgttgtttaccgagatgtttcttttctagt 828
||| || ||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1711 TATCTGAATTTCAAGTTTTGTTTTCGTTTGTGTTGTTTACCGAAATGTTTCTTTCCTAGT 1652
Query 829 tgCAAGACCTCTTTCATGTTACAATAACACTAAATTATCAATGCTTTCTATTCCGTTGCA 888
||||||||| |||||||||||||||||||||||||| |||||| || |||||||||||||
Sbjct 1651 TGCAAGACCGCTTTCATGTTACAATAACACTAAATTTTCAATGGTTACTATTCCGTTGCA 1592
Query 889 TTATTGTTAAGAA-CTACTTAGGTACTTTGAAAAATTTTCTACTACTTC 936
| ||||||||||| | | |||| |||||||| ||||| |||| ||||||
Sbjct 1591 TCATTGTTAAGAAAC-ATTTAGATACTTTGACAAATTCTCTATTACTTC 1544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45763307917
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5