BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488845
Length=2402
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19520.1 | Symbols: MSL9, ATMSL9 | mechanosensitive channel ... 3454 0.0
> AT5G19520.1 | Symbols: MSL9, ATMSL9 | mechanosensitive channel
of small conductance-like 9 | chr5:6585421-6588936 FORWARD
LENGTH=2530
Length=2530
Score = 3454 bits (1870), Expect = 0.0
Identities = 2219/2384 (93%), Gaps = 38/2384 (2%)
Strand=Plus/Plus
Query 1 AAAGCAGAACTAAAGTTTGAATCAAAGATCAATCCTTACTTGGGCTTGCTTTCAGTGTCC 60
||||||||||||||| || || ||||||||||||| ||| ||| ||||||||||||
Sbjct 1 AAAGCAGAACTAAAG-TT---TC-AAGATCAATCCTTGCTT-GGC---CTTTCAGTGTCC 51
Query 61 TTGATTTGGTCCAACTTCTAGGCTCTTTTGGGAGCCATTGGAGTCAAACTGCATCGC-AA 119
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||
Sbjct 52 TTGATTTGGTCCAACTTCTAGGCTCTTTTGGGAGCCATTGGAGTCAAACAGCACCGCAAA 111
Query 120 CTTATTGGTTGGAGGTGACTTCA-GGATGGCAGAGAGGAGAGTCAGTAACGGAGAAGAAG 178
||||||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||||
Sbjct 112 CTTATTGGTTGGAAGTGACTT-AGGGATGGCTGAGAGGAGAGTCAGTAACGGAGAAGAAG 170
Query 179 TTGTTATTAATGTTTCAGATAAAGAAGATCCAACAG---C---ATCATCTCCTTCTTTCA 232
||||||||||||||||||||||||||||| ||| || | | |||||||||||||||
Sbjct 171 TTGTTATTAATGTTTCAGATAAAGAAGATTCAAAAGATCCAAGAGCATCTCCTTCTTTCA 230
Query 233 ATCCATTGGCTTCACCAGAGTCAGATACAGGGGCTGAGAAATCAAAACCAGTGCCGCCGT 292
||||||||||||||||||| || ||| | ||| ||||||||| ||||||||||||||
Sbjct 231 ATCCATTGGCTTCACCAGACTCCGATGCTGGGATTGAGAAATCGAAACCAGTGCCGCCCA 290
Query 293 TAAGCATTCCTCCTCCTGAAATCTATAAGTTCTCTGGTAGCGTTCATAAGCCACCTAAGA 352
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 291 TAAGCATTCCTACTCCTGAAATCTATAAGTTCTCTGGTAGCGTTCATAAGCCACCTAAAA 350
Query 353 TCCCAAGTCCTAGCAATGAAGGTCTAGTTCGGAGGAAATCTCTTTCGAGGTCAGTTTACT 412
| |||||| | | ||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 351 TTCCAAGT-C---C--TGAAGGTCTAGTTCGGAGGAAGTCTCTTTCGAGGTCAATTTACT 404
Query 413 CCAAGTCC-AAGTCAAGGTTTGGGGAACAACGGTCTTTTCGATACGATAATATTATAGAG 471
||||| || ||||||||||||||||| |||| ||||||||||||||||| | || ||||
Sbjct 405 CCAAG-CCTAAGTCAAGGTTTGGGGAGCAACAGTCTTTTCGATACGATAGCACTAGAGAG 463
Query 472 GAAAATGGTGGAAGGTCCCTTAGGGAACAGTTTGGTGCTCCTTCATTTGCAAGGGGTTCT 531
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 464 GAAAATGGTGGAAGGTCCCTTAGGGAACAGTTTGGTGCTGGTTCATTTGCAAGGGGTTCT 523
Query 532 TTTGACAGGGCTTCTCCTAATAACAAATCGAATAGAAGCGTTGCGTCAGCAGCACTGAGT 591
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 524 TTTGACAGGGCTTCTCCTAATAACAAATCCAATAGGAGCGTTGCGTCAGCAGCACTGAGT 583
Query 592 AAAGTTGCTGAGGAGGAAAGGGATGAAAATGAGGAAATCTACAAAAAGGTTAAGCTACAC 651
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 584 AAAGTTGCTGAGGAGGAACCGGATGAAAATGAAGAAATCTACAAAAAGGTTAAGCTACAC 643
Query 652 CGAGTGAAGCGTAGCGGAATGAAACCTCTGG-CTCTGATTGAGTTGGTAGTGTTTATGGC 710
||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||
Sbjct 644 CGAGTGAAGCGTAGCGGAATGAAACCTCTGGCCT-TTCTTGAGTTGGTAGTGTTTATGGC 702
Query 711 CATTTTGGCCACTTTGGTTGTGAGTTTAACCATTGATAAGGTGAACAAGCATACCATTTG 770
|||||||| |||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 703 CATTTTGGGGGCTTTAATTGTGAGTTTAACCATTGATGTGGTGAACAAGCATACCATTTG 762
Query 771 GGGTTTGGAAGTTTGGAAATGGTCG-GTGCTTGTGATGGTTACACTCAGCGGCATGTTGG 829
||| |||||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 763 GGGGTTGGAATTTTGGAAATGGT-GTGTGCTTGTGATGGTTACACTCAGCGGCATGTTGG 821
Query 830 TGACAAATTGGTTCATGCATTTTGCAGTGTTCCTCATAGAAAAGAACTATCTTCTTCGGA 889
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 822 TGACAAATTGGTTCATGCATTTTGTGGTGTTCATCATAGAAAAGAACTATCTTCTTCGGA 881
Query 890 AAAAAGTTCTGTACTTTGTGCATGGTTTGAAGAAGAATGTTCAAGTCTTCATTTGGTTTA 949
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 882 AAAAAGTTTTGTACTTTGTGCATGGGTTGAAGAAGAATGTTCAAGTCTTCATTTGGTTTA 941
Query 950 CTCTGGTTCTGATTGCTTGGATATGTCTGTTCGATGATAACGTTAAACACT-CTCGTAAG 1008
||||||||||||||||||||||||||||||||||| | | ||||||| | ||||||||
Sbjct 942 GTCTGGTTCTGATTGCTTGGATATGTCTGTTCGATGGTGATGTTAAAC-GTACTCGTAAG 1000
Query 1009 ACCAAGAAATTTCTCGACTTCATTACTTGGACTATTGTCTCCCTTCTCGTAGGGTCAATC 1068
||||||| |||||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1001 ACCAAGAGATTTCTAGACTTCATCACTTGGACTATTGTCTCTCTTCTCGTAGGGTCAATC 1060
Query 1069 CTTTTCTTGGTAAAGACGTTTGCCTTGAAAGTTCTTGCATCAAAGTTCAACGTCAGAAAC 1128
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1061 CTTTTCTTGGTGAAGACGTTTGCCTTGAAAGTTCTTGCTTCAAAGTTCAACGTCAGAAAC 1120
Query 1129 TTCTTTGAGAGAATTCAAGAGTCTATTTTCAACCAATACGTTCTCCAAACTCTCTCGGGA 1188
||||||||||| |||||||||||| ||||| ||||||||||||| || ||||||||||||
Sbjct 1121 TTCTTTGAGAGGATTCAAGAGTCTGTTTTCCACCAATACGTTCTTCAGACTCTCTCGGGA 1180
Query 1189 CCTCCGCTTATAGAAGAGGCAGAGAACGTTGGGCGTGTGCCAAGCACAGGCCACCTAAGT 1248
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1181 CCTCCGCTTATCGAAGAGGCAGAGAACGTTGGGCGCGTGCCAAGCACAGGTCACCTAAGT 1240
Query 1249 TTCACAAGCACCAAGGATGGAAAAGTGAAAGACAAGAAAGTGATCGATATGGGTAAGGTT 1308
|||||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1241 TTCACAAGAACCAAAGATGGAAAGGTGAAAGACAAGAAAGTGATCGATATGGGAAAGGTT 1300
Query 1309 CACAGGATGAAACAAGAGAAGGTCTCTGCTTGGACAATGCGTGTTTTGATCGAAGCGGTG 1368
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1301 CACAGGATGAAACAAGAGAAGGTCTCTGCTTGGACAATGCGTGTTTTGATCGAAGCCGTG 1360
Query 1369 GGAACTTCAGGTATATCTACCATATCCAGCACTTTAGATGAGGTCAACAATAAGAAAGAG 1428
||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1361 GGAACTTCAGGTATATCAACCATATCCAGCACTCTAGACGAGGTCAACAATAAGAAAGAG 1420
Query 1429 CA-AAAAGATAAAGAGATAACAAATGAGATGGAGGCTGTGGCTGCTGCTTATGAAGTCTT 1487
| || ||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1421 -AGAACAGATAAAGAGATAACAAATGAGATGGAGGCTGTTGCTGCTGCTTATGACGTCTT 1479
Query 1488 CAAAAATGTTGCTAAGCCGAACCATAATTACATAGAAGAAGATGACCTATTGAGGTTCAT 1547
||| ||||| |||||||| ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1480 CAACAATGTCGCTAAGCCAAACCACAATTACATAGAAGAAGATGACTTATTGAGGTTCAT 1539
Query 1548 GATTAGGGAAGAGGTAGACCTAGTACTCCCATTAATAGAAGATGCCGACACCGGAAAAAT 1607
||| | |||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1540 GATAAAGGAAGAAGTAGACCTTGTACTCCCATTAATAGAAGATGCCGACACCGGAAAAAT 1599
Query 1608 CACACGCAAGACTTTTACAGAATGGGTGGTTAATGTTTACACAAGTCGGAAAACTATAGG 1667
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1600 CACACGCAAGACTTTTACAGAATGGGTGGTTAATGTATACACAAGTCGGAAAACTATAGG 1659
Query 1668 GCATTCATTGAACGACACAAAAACAGCGGTTAAGCAGCTGGACAAACTTGTAACTGGAAT 1727
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1660 GCATTCACTGAACGACACAAAAACAGCGGTTAAGCAGTTGGACAAACTTATAACTGGAAT 1719
Query 1728 CTTGACCATTATCACATTCATTGTTTGGTTGGTACTTCTGGATATAGCATCGACCAAGCT 1787
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1720 CTTGACCGTTATCACATTCATTGTTTGGATGGTACTTCTGGATATAGCATCGACCAAGCT 1779
Query 1788 TTTGTTGGTCTTCTCATCACAATTTGTGGGTCTTGCTTTCATGATCGGAAGCACTTGTAA 1847
||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1780 TTTATTGGTCTTCTCCTCACAATTTTTGGGTCTTGCTTTCATGATCGGAAGTACTTGTAA 1839
Query 1848 GAATATCTTTGAATCCTTTATGTTCGTCTTCGTAATGCATCCTTATGACGTCGGAGACCG 1907
||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 1840 GAATATCTTCGAATCCTTTATGTTCGTCTTTGTGATGCATCCTTATGACGTCGGAGATCG 1899
Query 1908 TTGCGTTGTCGACGGTGTTATGTTGCTGGTTGAAGAAATAGATCTTTTAACGACCGTGTT 1967
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1900 TTGCGTTGTCGACGGTGTTATGTTGTTGGTTGAAGAAATAGATCTTTTAACAACCGTGTT 1959
Query 1968 CCTCAAGATTGACAACGAGAAAGTGTTCTATCCAAACTCGGTTTTAATATCAAAACCGAT 2027
|||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 1960 CCTCAAGATTGACAACGAGAAAGTGTTCTACCCAAATTCGGTTTTAATATCGAAACCGAT 2019
Query 2028 AAGCAACTTCTACAGAAGTCCAGATATGGGAGATTATGTCGACTTCGCCATTGCATTCTC 2087
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 2020 AAGCAACTTCTACAGAAGTCCAGATATGGGAGATTATGTCGACTTCGGCATCGCATTCTC 2079
Query 2088 AACACCGGCCGAGAAAATCGGCAGTCTCAAGGGAAAAATCGGAGAATACTTGGTGGCAAA 2147
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2080 AACACCGGCCGAGAAAATCGGCTGTCTCAAGGGAAAAATCGGAGAATACTTGGTGGCAAA 2139
Query 2148 CTCACAACATTGGTATCCAGAAGCCCAGGTGATGGTGAGGGCGATTGAGAATATGAACAA 2207
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 2140 CTCACAACATTGGTATCCAGAAGCACAGGTGATGGTGAGGGCAATTGAGAATATGAACAA 2199
Query 2208 GCTGGTATTGAATATACTGGTCCAGCACACCATAAACTTCCAAGTATACATAGAGAAGAG 2267
|||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||
Sbjct 2200 GCTGGTATTGAATATACTGGTCCAACACACGATAAATTTCCAAGTATATGTAGAGAAGAG 2259
Query 2268 TAGAAGAAGAACCGCACTGATCATCGCAATCAAGCGGATTCTTGAGGAGCTTGAGATCGA 2327
| |||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 2260 TTTAAGAAGAACCGCGCTGATCATCGCAATCAAGCGAATTCTCGAGGATCTTGAGATCGA 2319
Query 2328 TTACAGC-CTCCTTCCTCAAGATGTTCA-TCTCACTGAACACAA 2369
||||| | ||||||||||||||||| || |||||||| |||||
Sbjct 2320 TTACA-CTCTCCTTCCTCAAGATGT-CAATCTCACTGGTCACAA 2361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119276494920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5