BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488848
Length=1489
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19540.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2242 0.0
> AT5G19540.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:6595702-6597889
FORWARD LENGTH=1600
Length=1600
Score = 2242 bits (1214), Expect = 0.0
Identities = 1375/1451 (95%), Gaps = 18/1451 (1%)
Strand=Plus/Plus
Query 1 TATCCCGTAAAACAAAATCAAGGGAGGAACCATGGCGGTGAGCTCCTTCGCCGTCCTTCC 60
||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||
Sbjct 16 TATCCCGTAAAACAAAAACGAGGGAGGAACCATGGCGGTGAGCTCATTCGCCGTCCTTCC 75
Query 61 TCCGTTTGG----TC--ACAGCTCCACAACCGAAAGAtcttcttcttcttcttcttcttA 114
||| ||||| || |||||||||||||||| ||||||||||||||||| || |||
Sbjct 76 TCCATTTGGTTCCTCATACAGCTCCACAACCGATAGATCTTCTTCTTCTTC--GTT-TTA 132
Query 115 CTCATCTTCGAAACTTCTCCGCATACCTCAATACCGGTTCCGGTCAAATTCCCGTTGTCC 174
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 133 CTCATCTTCGAAACTTCTCCGCATATCTCAATACCGGTTCCAGTCAAATTCCCGTTGTCC 192
Query 175 AAATGTGTTTGTCTCGTCCTCACTGAATCTA-CCGTCTGATGATGCTTCCGACGCCGCCC 233
||||||||| ||||||| ||||||||||| | || |||||||||||||||||||||||||
Sbjct 193 AAATGTGTTCGTCTCGTGCTCACTGAATC-AGCCTTCTGATGATGCTTCCGACGCCGCCC 251
Query 234 TTTTTCTAGAATCCAATTCAATTGCTGATTACATGAGGTTCAAACGCCGTCCCGACGCCG 293
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 252 TTTTTCTCGAATCCAATTCAATTGCTGATTACATGCGGTTCAAACGCCGTCCCGACCCCG 311
Query 294 GAAATGGCACCAGCGAGTTACAGACTGCAATCGTCAGCTACAAGAAACGTTTCCCTTGGA 353
||||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 312 GAAATGGTACCAGCGAGTTGCAGACTGCAATCGTGAGTTACAAGAAACGTTTCCCTTGGA 371
Query 354 TTCTTCTCAACCCTTTTCTTCAGGTAGATTTGGTCTCAACGATTCATATTGCAGATAAAG 413
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 372 TTCTTCTCAACCCTTTTCTTCAGGTGGATTTGGTCTCAACTATTCATATTGCAGATAAAG 431
Query 414 AGTACTTCACAACTCTTCAAAAGGAGCTTGAACCATATGATTCTATCTTGTATGAGATGG 473
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 432 AGTACTTCACAACTCTTCAGAAGGAGCTTGAACCATATGATTCTATCTTGTATGAGATGG 491
Query 474 TGGCTAGTAAAGAGACCTTGGAAAACAGGAAAAACCCAATTGCAGCCAAGAGACTCAAGA 533
|||||||||||||||||||||||||||||| |||||| |||||| | ||||| |||||||
Sbjct 492 TGGCTAGTAAAGAGACCTTGGAAAACAGGAGAAACCCTATTGCATCTAAGAGGCTCAAGA 551
Query 534 GTTCTCGTTCAAGAGGCTTCAGTATTCTCGGTTTCATTCAGCGGCAGATGGCAAGAGTAC 593
|||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 552 GTTCTCGTTCAAGAGGTTTCAGTATTCTTGGGTTCATTCAGCGGCAGATGGCAAGAGTAC 611
Query 594 TAACACTTGATTTTCAGCTAGATTGTCTAGATTACGAAACTGAGAATTGGTACCATGCTG 653
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 612 TAACACTTGATTTTCAGCTAGATTGTCTAGATTACGATACTGAGAATTGGTACCATGCTG 671
Query 654 ATCTCGATTTCGAGACTTTCCAGTTGCTTCAGAAGGAGAAAGGAGAAAGCTTCTTCTCAT 713
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 ATCTCGATTTCGAGACATTCCAGTTGCTTCAGAAGGAGAAAGGAGAAAGCTTCTTCTCAT 731
Query 714 TTGCCAGGGACATGACTATTAGATCAACAAAAGCAATGATACAGCCAGCTTTGGAAACTG 773
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 732 TTGCCAGGGACATGACTATTAGATCAACAAAAGCAATGATACAGCCAGCTTTGGTAACTG 791
Query 774 AAAGTCTTGATACATGGAGGTCAAAGCTTCTATGGGTTTCACGGGTTTTTCCTATGCCTC 833
|| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 AAGGTCGTGATACTTGGAGGTCAAAGCTTCTATGGGTTTCACGGGTTTTTCCTATGCCTC 851
Query 834 TTGTGGGTCTTTTCCTAATTGGGGCTTTTTGTGCTGACTTTGGAGATCAGACGTCAGACT 893
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 852 TTGTGGGTCTTTTCCTAATCGGGGCTTTTTGTGCTGACTTTGGAGATCAGACCTCAGACT 911
Query 894 ATCCAGAATTGGAAGCACTTTCACGGCTTGACTTTGGAGCTGCTATGAAGGTTTTCCTCG 953
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 912 ATCCAGAATTAGAAGCACTTTCACGGCTTGACTTTGGAGCTGCTATGAAGGTTTTCCTTG 971
Query 954 CTAAGAGATTGACATCTGAGCTAACACAAGAGACATCAGATATAGAGGAGAAATCTGTCA 1013
|||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 972 CTAAGAGATTGACATCCGAGCTAACACTAGAGACATCAGATATAGAGGAAAAATCTGTCA 1031
Query 1014 TCATTGGTGAGAGAAACCGAGCAGCTACAGAAGCTTTAAGAAGAGCAATGGAGCAAGGGC 1073
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 1032 TCATTGGTGAGAGAAACCGAGCAGCTACGGAAGCTTTAAGAAGAGCAATAGAGCAAGGAC 1091
Query 1074 ACAAGAGAATTGGAATTCTTTATGGCGGAGGCCACATGCCTGACCTGGGAAGACGACTGA 1133
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1092 ACAAGAGAATTGGAATTCTATATGGCGGAGGCCACATGCCCGACCTGGGAAGACGACTGA 1151
Query 1134 GAGAAGAGTTTGATCTTGTTCCTTGC-GAGGTAAGATGGGTAACAGCTTGGTCCATCAGA 1192
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1152 GAGAAGAGTTTGATCTTGTTCCTT-CAGAGGTAAGATGGGTAACAGCTTGGTCCATCAGA 1210
Query 1193 AATCCAACGGACTTGGAGACTAGTTCATATCCGATTCTGAGGAGAATGGCAGAGGCTTTG 1252
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1211 AATCCAACGGACTTGGAGACTAGTTCATATCCGATTCTGAGGAAAATGGCAGAGGCTTTG 1270
Query 1253 CGTTGGCCACTAAACCGGTACCAAACCTTGGCATTACTAATATTTTCATCAGTGCTTGCA 1312
|||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||
Sbjct 1271 CGTTGGCCACTAAACCGGTACCAAACATTGGCATTGCTAATATTTTCATCTGTACTTGCA 1330
Query 1313 CTGGATCTCTGCTTCTGGGAGCTCTTCTTTGGTTCGACAATTGACTGGGCTTCCCAGATA 1372
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1331 CTGGATCTCTGCTTTTGGGAGCTCTTCTTTGGTTCGACAATTGACTGGGCTACCCAGATA 1390
Query 1373 GGTGCAGAGTTGTACCAGTT-AGTAGATAATACAAAAAATGTGTAACACACAG-ACAGAA 1430
||||||||||| |||||||| | ||||||||||||||| | |||| || ||| ||||||
Sbjct 1391 GGTGCAGAGTTATACCAGTTTA-TAGATAATACAAAAA-T-TGTATGACGCAGCACAGAA 1447
Query 1431 TCATGTACAAA 1441
|||||||||||
Sbjct 1448 TCATGTACAAA 1458
Score = 78.7 bits (42), Expect = 2e-13
Identities = 46/48 (96%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 1442 TCTGTTGAAAAGCAAACATTGCTCTGATGTCAAAGAAATCTATTGAAT 1489
||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1494 TCTGTTGTAAAGCAAACATGGCTCTGATGTCAAAGAAATCTATTGAAT 1541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73443397335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5