BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488850
Length=1802
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19560.1 | Symbols: ATROPGEF10, ROPGEF10 | ROP uanine nucleo... 2610 0.0
> AT5G19560.1 | Symbols: ATROPGEF10, ROPGEF10 | ROP uanine nucleotide
exchange factor 10 | chr5:6603291-6606448 FORWARD LENGTH=1800
Length=1800
Score = 2610 bits (1413), Expect = 0.0
Identities = 1700/1829 (93%), Gaps = 57/1829 (3%)
Strand=Plus/Plus
Query 1 ATGTTCGATGGTCGGAACTCTGGACATTCATCCTTCTCTTCTCGTGGGGATGGCATGCAT 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGTTCGATGGTCGGAACTCTGGACATTCATCTTTCTCTTCTCGTGGGGATGGCATGCAT 60
Query 61 ACACCCGAGCACGAACTTGCCGTACATGGAATGGATGCTGCACCATCCACTCGTAGAGGC 120
|||||||||||||||| | || | || | ||||||||||||||||||||||||||
Sbjct 61 ACACCCGAGCACGAAC-T--CG--C-CGG-A--CATGCTGCACCATCCACTCGTAGAGGC 111
Query 121 AAGCAAAGTAGGAGATCAGACATTGAAGTGATGAAGGAAAGATTCGCAAAACTGCTACTT 180
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 112 AAGCAAAATAGGAGATCAGACATGGAAGTGATGAAGGAAAGATTCGCAAAACTGCTTCTT 171
Query 181 GGAGAGGACATGTCAGGCGGTGGGGA-TGGGGTGACCTCTGCGTTAGCTTTGTCAAACGC 239
||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||
Sbjct 172 GGAGAGGACATGTCAGGCGGT-GGGACAGGGGAGACCTCTGCGTTAGCTTTGTCAAACGC 230
Query 240 CATCACCAAACTCGCTGATTCAATGTTTGGGGAGCAGATGAAATTGCAGCCTATGTATCC 299
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 231 CATCACCAAACTCGCTGATTCGATGTTTGGAGAGCAGATGAAATTGCAGCCTATGTATCC 290
Query 300 AGAGACAAAAGAGATTTGGAGGAAAGAAATGGATTGGTTATTATCTGTGGTTGATCACAT 359
||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 291 GGAGACAAAAGAGAATTGGAGGAAAGAAATGGGTTGGTTATTATCTGTGATTGATCACAT 350
Query 360 TGTCCAGTTTGTTCCTTCTAAACAAATGGGCAAAAATGGCCAATTCACTGAGATCATGGT 419
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 351 TGTCCAGTTTGTTCCTTCTAGACAAATGGGTAAAAATGGCCAATTCACTGAGATCATGGT 410
Query 420 GACGAAACAAAGAGATGATTTGCTGACGAACATTCCAGCTTTACGCAAACTTGACTCGGT 479
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TACAAAACAAAGAGATGATTTGCTGACGAACATTCCAGCTTTACGCAAACTTGACTCGGT 470
Query 480 TCTTCTCGAAACTTTGGACAACTTCAAGGATCAGAAAGAGTTTTGGTATGTGCCAAGAGA 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 471 TCTTCTCGAAACTTTGGACAACTTCAAGGATCAGAAAGACTTTTGGTATGTGCCAAGAGA 530
Query 540 TATTGAGGATGCAGATCACAATGGAGATTGGAGGAGGGATGAGAACTGGTGGCTACCAGT 599
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 531 TATGGAGGATGCAGATCACAATGGAGATTGGAGGAGGGATGAGAACTGGTGGTTACCAGT 590
Query 600 TGTTAAAGTTCCAACAGATGGTTTGTCTGAGGAATCACGTAGATGGTTGCAAAATCAGAA 659
|||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 591 TGTTAAGGTTCCAACAGATGGCTTGTCTGAGGAATCACGTAGATGGTTGCAGAATCAGAA 650
Query 660 AGATTCTGTGGCACAAGTCCTTAAAGCCGCCACGGCCATCAATGCTCATGTATTGTCTGA 719
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 AGATTCTGTGGCTCAAGTCCTTAAAGCCGCCACGGCCATCAATGCTCATGTATTGTCTGA 710
Query 720 AATGCACATTCCTGAAAACTACATTGATTCCCTTCCGAAGAATGGGAAGACAAGTTTGGG 779
||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 711 AATGCACGTTCCTGAAAACTACATTGATTCCCTTCCAAAGAATGGGAAGACAAGCTTGGG 770
Query 780 CGATTTTCTTTACAAGAGCATAACAGAGGA-ATGCTTTGATCCTGACTACTTTGTTTCTT 838
||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||
Sbjct 771 AGATTTTCTTTACAAGAGCATAACAGAGGAGA-GCTTTGATCCTGACTACTTTGTCTCTT 829
Query 839 TCTTGGATTTGTCAACGGAACACAAAGTACTTGATCTAAAGAACAGGATTGAAGCTTCCA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TCTTGGATTTGTCAACGGAACACAAAGTACTTGATCTAAAGAACAGGATTGAAGCTTCCA 889
Query 899 TGGTGATTTGGAAGAGGAAGATGTGCCAGAAGGAGAAAGACGGGAAATCGCAGTGGGGAT 958
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 890 TGGTGATCTGGAAGAGGAAGATGTGCCAGAAAGAGAAAGACGGGAAATCTCAGTGGGGAT 949
Query 959 CAACCGTTAGCTTAGAGAAGAGAGAGCTTTTTGAGGTCCGAGCTGAGACCATTTTGGTTA 1018
| || ||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 950 CCACTGTTAGCTTAGAGAAGAGGGAGCTTTTCGAAGTCCGAGCTGAGACCATTTTGGTTA 1009
Query 1019 TGCTCAAACAGCAATTCCCTGGAATCCCACAATCCTCACTTGAAGTCTCCAAGATTAAAA 1078
|||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1010 TGCTCAAACAACAATTTCCTGGGATCCCACAATCCTCCCTTGAAGTCTCCAAGATTAAAA 1069
Query 1079 ACAACAAGGACATTGGACAGGCGATTTTGGAGAGCTATTCGAGGGTATTAGAAAGTCTGG 1138
|||||||||| |||||||||||||||||||||||||||| |||||| |||| ||||| |
Sbjct 1070 ACAACAAGGATGTTGGACAGGCGATTTTGGAGAGCTATTCAAGGGTACTAGAGAGTCTTG 1129
Query 1139 CTTCGAAGATAATGTCGAGAATAGAGCATGTTCTTGAAGCTGATCGGCTAGTTCAAAGAC 1198
|||| ||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1130 CTTCAAAGATAATGTCAAGAATAGAGGATGTTCTTGAAGCCGATCGGCTAGTTCAAAGAC 1189
Query 1199 AATTGATGGGAGAGGTAGAGACAAGATCAGAAAGCGAGGCAGAATCAGAATATGAGGAAA 1258
| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1190 AGTTGATGGGAGAGGCAGAGACAAGATCAGAAAGCGAGGCAGAATCAGAATACGAGGAAA 1249
Query 1259 CCGAAAAGGTGGTAGCAGCGGAAACACCAAACTCGAGGAAACTATCAGACTTCATAGGGT 1318
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 CTGAAAAGGTGGTTGCAGCGGAAACACCAAACTCGAGGAAACTATCAGACTTCATAGGGT 1309
Query 1319 GGAGATTGTCATCAGATACTAAGAAGCATAGTTCAATGAGTGATATAGAATTCTTCCACA 1378
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 GGAGATTGTCATCTGATACTAAGAAGCATAGTTCAATGAGTGATATAGAATTCTTCCACA 1369
Query 1379 AAGTTGAGCAAGAGAAGGAGAAGCCCATGATGAAGTCTCCAAGAGCTCTACCGAAGAAAT 1438
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 AAGTTGAGCAGGAGAAGGAGAAGCCCATGATGAAGTCTCCAAGAGCTCTACCGAAGAAAT 1429
Query 1439 TTTCATATCTAGCAAAGTTAGAGAACATGAGAAGCCCGAGTGACAGACACTGATAGTGAA 1498
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1430 TTTCATATCTAGCAAAGTTAGAGAACATGAGAAGCCCTAGTGACAGACACTGATAGTGAA 1489
Query 1499 AAGATCAGGTAATAGAACAGGGCATAGAAGAAGAAGGaaaaaaaaaaCAAagagagtgag 1558
|||| ||||||||||||||||||||||||||||| ||| | |||||||||||||
Sbjct 1490 AAGAGAAGGTAATAGAACAGGGCATAGAAGAAGAA--AAACA-----CAAAGAGAGTGAG 1542
Query 1559 aaagagagagaatagagaggagaTTAAAGTGTGTGAGAATGTGTACATATATAACAATGC 1618
| ||||||||||||| || || ||||||||||||||||||| ||||||||||||||||
Sbjct 1543 A--GAGAGAGAATAGA-AGAAGGTTAAAGTGTGTGAGAATGT--ACATATATAACAATGC 1597
Query 1619 AGGCGATGGTTGGTTTTAGGATTTGGTGATAGAGTGACCTGGT-T--GATCATGTTTGCT 1675
|||| || | ||||||||||||||| || ||| || |||| | ||||||| ||| |
Sbjct 1598 AGGC-AT--T-GGTTTTAGGATTTGGACAT-GAG--ACTTGGTGTTTGATCATGATTGTT 1650
Query 1676 GCTTGTTTTGACTATTGCTTCCTGTTGTTTTTTCTAAGAGGGAAGTGTGATT---T-TG- 1730
||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct 1651 GCTTGTTTTGACTATTGCTTCCTGTTGTTTTTTCTAAGAAGGAAGTGTGATTCAGTGTGT 1710
Query 1731 A----TATTTTGGT-T-------CTTTGGTGTTTTGCATTGTAACGTCTA-T--A-A-CA 1773
| ||||||||| | ||||||||||||| ||||||||||||| | | | ||
Sbjct 1711 AACAATATTTTGGTATTTTTGTTCTTTGGTGTTTTGTATTGTAACGTCTAATCTACAACA 1770
Query 1774 TTGTTTCCTAATGGATTTTGAAGCTCATT 1802
|||||||||||||||||||||||||||||
Sbjct 1771 TTGTTTCCTAATGGATTTTGAAGCTCATT 1799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89156167920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5