BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488851

Length=475
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G19570.1 | Symbols:  | unknown protein; CONTAINS InterPro DO...   736    0.0  


> AT5G19570.1 | Symbols:  | unknown protein; CONTAINS InterPro 
DOMAIN/s: Uncharacterised protein family UPF0546 (InterPro:IPR018908); 
Has 1807 Blast hits to 1807 proteins in 277 species: 
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants 
- 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI 
BLink). | chr5:6606700-6607203 FORWARD LENGTH=504
Length=504

 Score =  736 bits (398),  Expect = 0.0
 Identities = 450/475 (95%), Gaps = 3/475 (1%)
 Strand=Plus/Plus

Query  1    CACCGGCGATGAAGGAAGACATGGAGAAGATGGTGGCGGTAGGCCTCGTATGGGGAGCCA  60
            ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct  32   CACCGGCGATGAAGGAAGACATGGATAAGATGGTGGCGGTAGGGCTCGTATGGGGAGCCA  91

Query  61   CCAATGCTCTGATCCGCCGCGGCGCTCTCGCCTGGGATAAAACAAAGTCTTCTTCGACAA  120
            |||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct  92   CCAATGCTCTGATCCGTCGTGGCGCTCTTGCCTGGGATAAAACAAAGTCTTCTTCGACAA  151

Query  121  CAGAATCTCCTCCTCCTTCTCCACTTCAGATCCGCCGCAAAATCATGATTGCTCTTCGCG  180
            ||||||||| |  | || |||| |||||||||||||||||||||||||||||||| ||||
Sbjct  152  CAGAATCTCAT--T-CTCCTCCTCTTCAGATCCGCCGCAAAATCATGATTGCTCTCCGCG  208

Query  181  ATTGGATCAATCTCCTCCTCTTCTGGCAATACTCGATTCCTTTCCTCATTAATCTCTCCG  240
            | |||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct  209  ACTGGATCAATCTCCTCCTCTTCTGGCAATACTCAATTCCTTTCCTCATAAACCTCTCCG  268

Query  241  CCTCCGCCACATTCTTCGCCCTTCTCAGTCACGCTCCTATCTCTCTTGCCGTTCCGGTCA  300
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct  269  CCTCCGCCACATTCTTCGCCCTTCTCAGTCACGCTCCCATCTCTCTTGCCGTTCCGGTGA  328

Query  301  CCAACGCCACTACTTTTGCCGCAACCGCCGCTTTTGGGATCCTTTTAGGGGAAGAAACTC  360
            | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  329  CTAACGCCACAACCTTTGCCGCAACCGCCGCTTTTGGGATCCTTTTAGGGGAAGAAACTC  388

Query  361  AGATCGGACTTGCTTTGTTAGGTACGAGCTTTATTGTATTTGGAATTTGGCTTTGTGTTC  420
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  389  AAATCGGACTTGCTTTGTTAGGTACGAGCTTTATTGTATTTGGAATTTGGCTTTGTGTTC  448

Query  421  TGTGAACTTGGAATTTTGTAAAACCGTGACTCTGTTTCTGCGAGATCTATTTTGC  475
            |||||| || |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  449  TGTGAAATTCGAATTTTGTAAAACCGTGACTCTGTTTCTGTGAGATCTATTTTGC  503



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22605366150


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5