BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488854
Length=2251
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19600.1 | Symbols: SULTR3;5 | sulfate transporter 3;5 | chr... 3376 0.0
> AT5G19600.1 | Symbols: SULTR3;5 | sulfate transporter 3;5 | chr5:6612815-6616997
REVERSE LENGTH=2309
Length=2309
Score = 3376 bits (1828), Expect = 0.0
Identities = 2014/2103 (96%), Gaps = 16/2103 (1%)
Strand=Plus/Plus
Query 1 GTTCTCTAAAACGAACTTAAAAGTAACAAAGTAGACAGAAAGttttttttACCTCTTCCT 60
|||||||| ||||||||| |||||||||||||| |||||||| ||||||| |||||||
Sbjct 1 GTTCTCTACAACGAACTTTAAAGTAACAAAGTACACAGAAAG--GTTTTTACTTCTTCCT 58
Query 61 TGCTTGTTGTGTGTGTATTCT--TTCATATACAATTGTTTTGTTGTAACTATGGAGAATA 118
|||||| | |||||||||||| |||| ||||||||||||| ||||||||||||||||||
Sbjct 59 TGCTTG-T-TGTGTGTATTCTCATTCACATACAATTGTTTTTTTGTAACTATGGAGAATA 116
Query 119 CTATAACGAGCTCCACCTCCTCACCCAAGGGCCGGGGAGTAAATTTCTCTG-CCCCGAGA 177
||||||||||||| ||||||||||| ||||||||||||||||||||||| | ||||||||
Sbjct 117 CTATAACGAGCTCTACCTCCTCACCGAAGGGCCGGGGAGTAAATTTCTC-GACCCCGAGA 175
Query 178 GGCTTTGGTTCAAAATTTAAGACAAAATGTAAAGAAACCTTCTTTCCCGATGATCCATTC 237
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 176 GGCTTTGGTTCAAAATTTAAGTCAAAATGTAAAGAAACCTTCTTTCCCGATGATCCATTC 235
Query 238 AAACCGATATCGCAAGAGCCAAACCGTTTGATaaaaacaaaaaaGTTATTGGAGTATTTT 297
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 236 AAACCGATATCGCAAGAGCCAAACCGTTTGCTAAAAACAAAGAAGTTATTGGAGTATTTT 295
Query 298 GTACCAATCTTTGAGTGGCTCCCAAAGTACGATATGCAAAAACTTAAGTACGATGTGCTC 357
|| |||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 296 GTGCCAATCTTTGAGTGGCTCCCAAAGTATGATATGCAAAAACTAAAGTATGATGTGCTC 355
Query 358 GCAGGAATCACCATCACCAGTCTTGCCGTTCCTCAGGGTATAAGCTATGCTAAGCTCGCC 417
|| ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 356 GCCGGAATCACCATCACCAGTCTTGCTGTTCCTCAGGGCATCAGCTATGCTAAGCTCGCC 415
Query 418 AGTATCCCACCCATCATTGGCCTATATTCAAGTTTCGTGCCGCCATTTGTGTACGCCGTG 477
|||||||| |||||||| ||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 416 AGTATCCCTCCCATCATAGGCCTATATTCAAGTTTTGTGCCGCCTTTTGTGTATGCCGTG 475
Query 478 TTCGGAAGTTCAAACAATCTGGCAGTGGGAACAGTCGCAGCATGCTCTTTGCTGATAGCT 537
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 476 TTCGGAAGTTCGAACAATCTGGCAGTGGGAACAGTCGCAGCATGCTCTTTGCTGATCGCT 535
Query 538 GAGACATTCGGTGAGGAAATG-TCCAAAAATGAACCTGAACTCTACCTTCATTTGATCTT 596
||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||||||
Sbjct 536 GAGACATTCGGTGAGGAGATGAT-AAAAAATGAGCCTGAACTCTACCTTCATTTGATCTT 594
Query 597 CACCGCCACTCTCATCACCGGTCTATTCCAATTTGCTATGGGCTTCTTGAGGTTGGGGAT 656
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 595 CACCGCCACTCTCATCACCGGTCTATTCCAATTTGCTATGGGATTCTTGAGGTTGGGGAT 654
Query 657 ATTGGTGGATTTCTTGTCACACTCGACCATAACGGGCTTCATGGGCGGTACCGCAATCAT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 ATTGGTGGATTTCTTGTCACACTCGACCATAACGGGCTTCATGGGCGGTACCGCAATCAT 714
Query 717 CATTCTCCTCCAACAGCTTAAGGGCATCTTTGGACTAGTCCATTTTACGCACAAAACCGA 776
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 CATTCTCCTACAACAGCTTAAGGGCATCTTTGGACTAGTCCATTTTACGCACAAAACCGA 774
Query 777 TGTCGTATCAGTTCTCCACTCAATCTTAGACAACCGTGCTGAGTGGAAGTGGCAAAGTAC 836
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 775 TGTCGTATCAGTTCTCCACTCAATCTTAGACAACCGGGCTGAGTGGAAGTGGCAAAGTAC 834
Query 837 CTTGGCTGGTGTCTGCTTTCTTGTATTTCTACAATCCACTCGATACATAAAGCAAAAATA 896
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 835 CTTGGCTGGTGTCTGCTTTCTTGTATTTCTACAATCCACTCGATACATAAAGCAAAGATA 894
Query 897 CCCAAAGCTATTTTGGGTATCAGCAATGGGTCCAATGGTGGTCGTCATTGTGGGTTGCGT 956
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 895 CCCAAAGCTATTTTGGGTATCAGCAATGGGTCCAATGGTGGTGGTCGTTGTGGGTTGCGT 954
Query 957 TGTTGCTTATTTGGTGAAAGGAACAGCACACGGCATTGCTACTGTTGGGCCTTTAAAGAA 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TGTTGCTTATTTGGTGAAAGGAACAGCACACGGCATTGCTACTGTTGGGCCTTTAAAGAA 1014
Query 1017 AGGACTAAACCCTCCTTCAATTCAACTTTTGAACTTTGACTCCAAGTATCTAGGGATGGT 1076
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 AGGACTAAATCCTCCTTCTATTCAACTTTTGAACTTTGACTCCAAGTATCTAGGGATGGT 1074
Query 1077 GTTTAAGGCCGGAATCGTCACTGGACTCATCGCTTTGGCCGAAGGGATAGCGATTGGAAG 1136
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1075 GTTTAAGGCCGGAATCGTCACAGGACTCATCGCTTTGGCCGAAGGGATAGCAATTGGAAG 1134
Query 1137 AAGCTTTGCTGTAATGAAGAACGAACAAACGGACGGGAACAAAGAGATGATAGCATTTGG 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 AAGCTTTGCTGTAATGAAGAACGAACAAACGGACGGGAACAAAGAGATGATAGCATTTGG 1194
Query 1197 TCTTATGAACGTAATTGGCTCCTTCACTTCTTGCTATTTGACAACGGGGCCATTTTCAAA 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 TCTTATGAACGTAATTGGCTCCTTCACTTCTTGCTATTTGACAACGGGGCCATTTTCAAA 1254
Query 1257 GACAGCAGTGAACTACAACGCGGGGACAAAGACACCAATGTCGAATGTAGTGATGGGCGT 1316
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1255 GACAGCAGTGAACTACAACGCGGGGACAAAGACACCGATGTCGAATGTAGTAATGGGCGT 1314
Query 1317 TTGCATGATGCTTGTACTTCTCTTCCTAGCGCCTCTATTCAGCTACACACCACTGGTTGG 1376
||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1315 TTGCATGATGCTTGTGCTTCTCTTCCTAGCGCCTCTATTCAGCTACACACCATTAGTTGG 1374
Query 1377 TCTTTCAGCTATCATTATGTCAGCCATGTTGGGTCTCATCAACTACGAGGAGATGTACCA 1436
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 TCTCTCAGCCATCATTATGTCAGCCATGTTGGGTCTCATCAACTACGAGGAGATGTACCA 1434
Query 1437 TCTCTTCAAGGTTGACAAGTTTGATTTCCTCGTCTGCATGTCTGCCTTTTTTGGTGTTTC 1496
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1435 TCTCTTCAAGGTTGACAAGTTTGATTTCCTCGTCTGCATGTCCGCCTTTTTCGGTGTTTC 1494
Query 1497 CTTCCTTAGCATGGACTACGGTCTCATCATCTCCGTTGGGTTTTCTATCGTAAGAGCGTT 1556
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1495 ATTCCTTAGCATGGACTACGGTCTCATCATCTCCGTTGGATTTTCTATCGTAAGAGCTTT 1554
Query 1557 GTTGTACGTTGCAAGGCCCTCGACTTGTAAACTGGGAAGGATACCAAACTCGGTTATGTT 1616
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1555 GTTGTACGTTGCAAGGCCCTCCACTTGTAAATTGGGAAGGATACCAAACTCGGTTATGTT 1614
Query 1617 TAGAGACATAGAACAGTACCCAGCTTCAGAGGAAATGCTTGGTTATATCATTCTTCAATT 1676
||||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||
Sbjct 1615 TAGAGACATAGAACAGTACCCTGCCTCCGAGGAGATGCTTGGTTATATCATTCTTCAATT 1674
Query 1677 AGGCTCTCCCGTCTTTTTTGCCAACAGCACTTACGTCCGTGAACGGATCTTGAGGTGGAT 1736
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1675 AGGCTCTCCAGTCTTTTTTGCCAATAGCACTTACGTCCGTGAACGGATCTTGAGGTGGAT 1734
Query 1737 TCGTGATGAACCTGAAGCCATCGAGTTTCTTCTCCTTGATCTCTCTGGAGTTTCAACCAT 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 TCGTGATGAACCTGAAGCCATCGAGTTTCTTCTCCTTGATCTCTCTGGAGTTTCAACCAT 1794
Query 1797 TGACATGACCGGGATGGAAACGCTACTCGAAGTTCAGAGAATCCTTGGATCAAAAAGCAT 1856
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||
Sbjct 1795 TGACATGACCGGGATGGAAACACTACTCGAAATTCAGAGAATCCTTGGATCAAAAAACAT 1854
Query 1857 CAAGATGGTGATAATAAATCCAAGGTTTGAAGTCTTGGAAAAGATGATGTTGTCACATTT 1916
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1855 CAAGATGGTGATAATAAATCCAAGATTTGAAGTCTTGGAAAAGATGATGTTGTCCCATTT 1914
Query 1917 CGTGGACAAGATAGGAAAGGAGTATATGTTCTTATCCATTGACGATGCAGTTCAAGCATG 1976
|||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1915 CGTGGAGAAGATAGGAAAAGAGTATATGTTCTTATCGATTGACGATGCAGTTCAAGCATG 1974
Query 1977 CCGATTTAATCTTACCACCACCAAGCCGGAACCGTGACCTTCTTCTTAGTTATTAGTGGG 2036
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1975 CCGATTTAATCTTACCACCACCAAGCCGGAAGTGTGACCTTCTTCTTAGTTATTAGTGGG 2034
Query 2037 AAGGTTATAATAAAATGCGTA-TCtttttttttttttttGTCAATGGAAATTTAAACTGC 2095
|||||| |||||||||||||| |||||| |||||| |||||||||| || |||||||
Sbjct 2035 AAGGTTCTAATAAAATGCGTAATCTTTTCTTTTTT----GTCAATGGAAGTT-AAACTGC 2089
Query 2096 TTA 2098
|||
Sbjct 2090 TTA 2092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111696212625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5