BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488857
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19630.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1107 0.0
AT5G42677.1 | Symbols: | Pseudogene of AT5G19630 | chr5:171136... 193 3e-48
AT4G04223.1 | Symbols: | other RNA | chr4:2036511-2037800 FORW... 178 7e-44
AT3G56210.5 | Symbols: | ARM repeat superfamily protein | chr3... 178 7e-44
AT5G38005.1 | Symbols: | other RNA | chr5:15155067-15156088 FO... 174 9e-43
> AT5G19630.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:6627975-6630024 REVERSE LENGTH=946
Length=946
Score = 1107 bits (599), Expect = 0.0
Identities = 681/721 (94%), Gaps = 4/721 (1%)
Strand=Plus/Plus
Query 1 ATTCATCATCTTTCCGAAAATGTCGTCAAACTTTACAGTGGAATCGTGTAGCGTTGATTC 60
|||| || ||| ||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 69 ATTCGTCGTCTCTCCTAAAATGTCGTCAAACTTTATAGTGGAATCGTGTAGCGTTGATTC 128
Query 61 GGAGGAAGGGGTGAAGCTTCACACGAGAGTCTTCAAGCCCAGAAACGAAGGAGAAGAAGT 120
|| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 129 AGAAGAAGGGGTGAAGCTTCACACGAGAATCTTCAAACCCAGAAACGAAGGAGAAGAAGT 188
Query 121 CAGCGACGATGGGAATCTGGTGATAGTATTGGTCCACCCGTTCTCGCTCTTGGGTGGTTG 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 CAGCGACGATGAGAATCTGGTGATAGTATTGGTCCACCCGTTCTCGCTCTTGGGTGGTTG 248
Query 181 TCAGGCTCTTCTCAAAGGCATAGCTTCTGAATTGGCCTCTAAGGGTTTAAAGGCTGTCAC 240
||| ||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 249 TCAAGCTCTGCTCAAAGGCATAGCTTCTGAATTGGCCTCTAAGGGTTTCAAGTCTGTCAC 308
Query 241 TTTCGATACAAGAGGTGCCGGAAAATCCACCGGAAGAGCTACTCTTACCGGCTTTGCTGA 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TTTCGATACGAGAGGTGCCGGAAAATCCACCGGAAGAGCTACTCTTACCGGCTTTGCTGA 368
Query 301 GGTCAAGGATGTCGTCGCTGTTTGTCGGTGGCTTTGTCAGAATGTTGGA-GCTCATAGGA 359
|||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 369 GGTCAAGGATGTGGTCGCTGTTTGTCGGTGGCTTTGTCAGAATGTTG-ATGCTCATAGGA 427
Query 360 TCCTGCTCGTGGGTTCTTCTGCTGGTGCACCAATCGCAGGATCAGCAGTGGATCAAGTAG 419
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 428 TCCTGCTCGTGGGTTCTTCTGCTGGTGCACCAATCGCAGGATCAGCGGTGGAGCAAGTAG 487
Query 420 AGCAAGTGGTGGGATATGTGAGTTTGGGATACCCATTTGGCCTAATGGCCTCCATTCTGT 479
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 488 AGCAAGTGGTGGGATATGTGAGTTTGGGATACCCATTTGGCCTAATGGCCTCGATTCTCT 547
Query 480 TTGGACGGCACCACAAGGCCATTCTCTCATCCCCTAAACCCAAGCTCTTTGTTATGGGAA 539
|||| || ||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 548 TTGGGCGACACCACAAGGCCATTCTCTCATCCCCTAAACCCAAACTCTTCGTAATGGGAA 607
Query 540 CACAAGACGGGTTCACTAGCGTTAGCCAGCTAAAGAAGAAGCTGAAGTCTGCAGTTGGAC 599
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 608 CACAAGACGGGTTCACTAGCGTTAGCCAGCTAAAGAAGAAGCTGAAATCTGCAGTCGGAC 667
Query 600 GCACCGATACACACCTCATTGAAGGTGTTAGCCATTTCCAGATGGAAGGACCTGAATATG 659
|||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 668 GCACTGAAACACACCTCATTGAAGGCGTTAGTCATTTCCAGATGGAAGGACCTGAATATG 727
Query 660 ATTCTCAGGTGACCGATATCATATGTAA-TTTCATATCATCCTTGTAAAATTGCACATGA 718
||||||||||||||||||| |||||||| ||| || |||||| |||||||| |||||||
Sbjct 728 ATTCTCAGGTGACCGATATTATATGTAAATTT-ATTTCATCCCTGTAAAATACCACATGA 786
Query 719 A 719
|
Sbjct 787 A 787
> AT5G42677.1 | Symbols: | Pseudogene of AT5G19630 | chr5:17113637-17113905
FORWARD LENGTH=269
Length=269
Score = 193 bits (104), Expect = 3e-48
Identities = 134/148 (91%), Gaps = 4/148 (3%)
Strand=Plus/Plus
Query 120 TCAGCGACGATGGGAATCTGGTGATAGTATTGGTCCACCCGTTCTCGCTCTTGGGTGGTT 179
|||||||||||| ||||||| |||||| ||||||||||||||||||| ||||||||||||
Sbjct 2 TCAGCGACGATGAGAATCTGCTGATAG-ATTGGTCCACCCGTTCTCGATCTTGGGTGGTT 60
Query 180 GTCAGGCTCTTCTCAAAGGCATAGCTTCTGAATTGGCCTCTAAG--G-GTTTAAAGGCTG 236
|||| ||||| |||||||||||||||||||||||||||||||| | |||| ||| ||
Sbjct 61 GTCAAGCTCTGCTCAAAGGCATAGCTTCTGAATTGGCCTCTAATAAGAGTTTCAAGTTTG 120
Query 237 TCACTTTCGATACAAGAGGTGCCGGAAA 264
|||||||| |||||||||||||||||||
Sbjct 121 TCACTTTCTATACAAGAGGTGCCGGAAA 148
> AT4G04223.1 | Symbols: | other RNA | chr4:2036511-2037800 FORWARD
LENGTH=549
Length=549
Score = 178 bits (96), Expect = 7e-44
Identities = 124/137 (91%), Gaps = 3/137 (2%)
Strand=Plus/Plus
Query 250 AAGAGGTGCCGGAAAATCCACCGGAAGAGCTACTCTTACCGGCTTTGCTGAGGTCAAGGA 309
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 175 AAGAGGTGTCAGAAAATCCACCGGAAGAGCTACTCTTACCGGCTTTGCTGAGGTCAACGA 234
Query 310 TGTCGTCGCTGTTTGTCGGTGGCTTTGTCAGAATGTTGGA-GCTCATAGGATCCTGCTCG 368
||| | |||||||| ||||||| || || ||||||||| | ||||||||||||||||| |
Sbjct 235 TGTGG-CGCTGTTTTTCGGTGGATTGGTTAGAATGTTG-ATGCTCATAGGATCCTGCTTG 292
Query 369 TGGGTTCTTCTGCTGGT 385
||||||| |||||||||
Sbjct 293 TGGGTTCGTCTGCTGGT 309
> AT3G56210.5 | Symbols: | ARM repeat superfamily protein | chr3:20852385-20855610
REVERSE LENGTH=1616
Length=1616
Score = 178 bits (96), Expect = 7e-44
Identities = 124/137 (91%), Gaps = 3/137 (2%)
Strand=Plus/Plus
Query 250 AAGAGGTGCCGGAAAATCCACCGGAAGAGCTACTCTTACCGGCTTTGCTGAGGTCAAGGA 309
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1117 AAGAGGTGTCAGAAAATCCACCGGAAGAGCTACTCTTACCGGCTTTGCTGAGGTCAACGA 1176
Query 310 TGTCGTCGCTGTTTGTCGGTGGCTTTGTCAGAATGTTGGA-GCTCATAGGATCCTGCTCG 368
||| | |||||||| ||||||| || || ||||||||| | ||||||||||||||||| |
Sbjct 1177 TGTGG-CGCTGTTTTTCGGTGGATTGGTTAGAATGTTG-ATGCTCATAGGATCCTGCTTG 1234
Query 369 TGGGTTCTTCTGCTGGT 385
||||||| |||||||||
Sbjct 1235 TGGGTTCGTCTGCTGGT 1251
> AT5G38005.1 | Symbols: | other RNA | chr5:15155067-15156088
FORWARD LENGTH=545
Length=545
Score = 174 bits (94), Expect = 9e-43
Identities = 122/135 (90%), Gaps = 3/135 (2%)
Strand=Plus/Plus
Query 250 AAGAGGTGCCGGAAAATCCACCGGAAGAGCTACTCTTACCGGCTTTGCTGAGGTCAAGGA 309
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 142 AAGAGGTGTCGAAAAATCCACCGGAAGAGCTACTCTTACCGGCTTTGCTGAGGTCAACGA 201
Query 310 TGTCGTCGCTGTTTGTCGGTGGCTTTGTCAGAATGTTGGA-GCTCATAGGATCCTGCTCG 368
||| | || ||||| |||||||||| || ||||||||| | ||||||||||||||||| |
Sbjct 202 TGT-GACGATGTTTTTCGGTGGCTTGGTTAGAATGTTG-ATGCTCATAGGATCCTGCTTG 259
Query 369 TGGGTTCTTCTGCTG 383
||||||| |||||||
Sbjct 260 TGGGTTCGTCTGCTG 274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36269054134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5