BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488857 Length=747 Score E Sequences producing significant alignments: (Bits) Value AT5G19630.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1107 0.0 AT5G42677.1 | Symbols: | Pseudogene of AT5G19630 | chr5:171136... 193 3e-48 AT4G04223.1 | Symbols: | other RNA | chr4:2036511-2037800 FORW... 178 7e-44 AT3G56210.5 | Symbols: | ARM repeat superfamily protein | chr3... 178 7e-44 AT5G38005.1 | Symbols: | other RNA | chr5:15155067-15156088 FO... 174 9e-43 > AT5G19630.1 | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:6627975-6630024 REVERSE LENGTH=946 Length=946 Score = 1107 bits (599), Expect = 0.0 Identities = 681/721 (94%), Gaps = 4/721 (1%) Strand=Plus/Plus Query 1 ATTCATCATCTTTCCGAAAATGTCGTCAAACTTTACAGTGGAATCGTGTAGCGTTGATTC 60 |||| || ||| ||| ||||||||||||||||||| |||||||||||||||||||||||| Sbjct 69 ATTCGTCGTCTCTCCTAAAATGTCGTCAAACTTTATAGTGGAATCGTGTAGCGTTGATTC 128 Query 61 GGAGGAAGGGGTGAAGCTTCACACGAGAGTCTTCAAGCCCAGAAACGAAGGAGAAGAAGT 120 || |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 129 AGAAGAAGGGGTGAAGCTTCACACGAGAATCTTCAAACCCAGAAACGAAGGAGAAGAAGT 188 Query 121 CAGCGACGATGGGAATCTGGTGATAGTATTGGTCCACCCGTTCTCGCTCTTGGGTGGTTG 180 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 189 CAGCGACGATGAGAATCTGGTGATAGTATTGGTCCACCCGTTCTCGCTCTTGGGTGGTTG 248 Query 181 TCAGGCTCTTCTCAAAGGCATAGCTTCTGAATTGGCCTCTAAGGGTTTAAAGGCTGTCAC 240 ||| ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 249 TCAAGCTCTGCTCAAAGGCATAGCTTCTGAATTGGCCTCTAAGGGTTTCAAGTCTGTCAC 308 Query 241 TTTCGATACAAGAGGTGCCGGAAAATCCACCGGAAGAGCTACTCTTACCGGCTTTGCTGA 300 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 309 TTTCGATACGAGAGGTGCCGGAAAATCCACCGGAAGAGCTACTCTTACCGGCTTTGCTGA 368 Query 301 GGTCAAGGATGTCGTCGCTGTTTGTCGGTGGCTTTGTCAGAATGTTGGA-GCTCATAGGA 359 |||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 369 GGTCAAGGATGTGGTCGCTGTTTGTCGGTGGCTTTGTCAGAATGTTG-ATGCTCATAGGA 427 Query 360 TCCTGCTCGTGGGTTCTTCTGCTGGTGCACCAATCGCAGGATCAGCAGTGGATCAAGTAG 419 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 428 TCCTGCTCGTGGGTTCTTCTGCTGGTGCACCAATCGCAGGATCAGCGGTGGAGCAAGTAG 487 Query 420 AGCAAGTGGTGGGATATGTGAGTTTGGGATACCCATTTGGCCTAATGGCCTCCATTCTGT 479 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 488 AGCAAGTGGTGGGATATGTGAGTTTGGGATACCCATTTGGCCTAATGGCCTCGATTCTCT 547 Query 480 TTGGACGGCACCACAAGGCCATTCTCTCATCCCCTAAACCCAAGCTCTTTGTTATGGGAA 539 |||| || ||||||||||||||||||||||||||||||||||| ||||| || ||||||| Sbjct 548 TTGGGCGACACCACAAGGCCATTCTCTCATCCCCTAAACCCAAACTCTTCGTAATGGGAA 607 Query 540 CACAAGACGGGTTCACTAGCGTTAGCCAGCTAAAGAAGAAGCTGAAGTCTGCAGTTGGAC 599 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 608 CACAAGACGGGTTCACTAGCGTTAGCCAGCTAAAGAAGAAGCTGAAATCTGCAGTCGGAC 667 Query 600 GCACCGATACACACCTCATTGAAGGTGTTAGCCATTTCCAGATGGAAGGACCTGAATATG 659 |||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 668 GCACTGAAACACACCTCATTGAAGGCGTTAGTCATTTCCAGATGGAAGGACCTGAATATG 727 Query 660 ATTCTCAGGTGACCGATATCATATGTAA-TTTCATATCATCCTTGTAAAATTGCACATGA 718 ||||||||||||||||||| |||||||| ||| || |||||| |||||||| ||||||| Sbjct 728 ATTCTCAGGTGACCGATATTATATGTAAATTT-ATTTCATCCCTGTAAAATACCACATGA 786 Query 719 A 719 | Sbjct 787 A 787 > AT5G42677.1 | Symbols: | Pseudogene of AT5G19630 | chr5:17113637-17113905 FORWARD LENGTH=269 Length=269 Score = 193 bits (104), Expect = 3e-48 Identities = 134/148 (91%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 120 TCAGCGACGATGGGAATCTGGTGATAGTATTGGTCCACCCGTTCTCGCTCTTGGGTGGTT 179 |||||||||||| ||||||| |||||| ||||||||||||||||||| |||||||||||| Sbjct 2 TCAGCGACGATGAGAATCTGCTGATAG-ATTGGTCCACCCGTTCTCGATCTTGGGTGGTT 60 Query 180 GTCAGGCTCTTCTCAAAGGCATAGCTTCTGAATTGGCCTCTAAG--G-GTTTAAAGGCTG 236 |||| ||||| |||||||||||||||||||||||||||||||| | |||| ||| || Sbjct 61 GTCAAGCTCTGCTCAAAGGCATAGCTTCTGAATTGGCCTCTAATAAGAGTTTCAAGTTTG 120 Query 237 TCACTTTCGATACAAGAGGTGCCGGAAA 264 |||||||| ||||||||||||||||||| Sbjct 121 TCACTTTCTATACAAGAGGTGCCGGAAA 148 > AT4G04223.1 | Symbols: | other RNA | chr4:2036511-2037800 FORWARD LENGTH=549 Length=549 Score = 178 bits (96), Expect = 7e-44 Identities = 124/137 (91%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 250 AAGAGGTGCCGGAAAATCCACCGGAAGAGCTACTCTTACCGGCTTTGCTGAGGTCAAGGA 309 |||||||| | |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 175 AAGAGGTGTCAGAAAATCCACCGGAAGAGCTACTCTTACCGGCTTTGCTGAGGTCAACGA 234 Query 310 TGTCGTCGCTGTTTGTCGGTGGCTTTGTCAGAATGTTGGA-GCTCATAGGATCCTGCTCG 368 ||| | |||||||| ||||||| || || ||||||||| | ||||||||||||||||| | Sbjct 235 TGTGG-CGCTGTTTTTCGGTGGATTGGTTAGAATGTTG-ATGCTCATAGGATCCTGCTTG 292 Query 369 TGGGTTCTTCTGCTGGT 385 ||||||| ||||||||| Sbjct 293 TGGGTTCGTCTGCTGGT 309 > AT3G56210.5 | Symbols: | ARM repeat superfamily protein | chr3:20852385-20855610 REVERSE LENGTH=1616 Length=1616 Score = 178 bits (96), Expect = 7e-44 Identities = 124/137 (91%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 250 AAGAGGTGCCGGAAAATCCACCGGAAGAGCTACTCTTACCGGCTTTGCTGAGGTCAAGGA 309 |||||||| | |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1117 AAGAGGTGTCAGAAAATCCACCGGAAGAGCTACTCTTACCGGCTTTGCTGAGGTCAACGA 1176 Query 310 TGTCGTCGCTGTTTGTCGGTGGCTTTGTCAGAATGTTGGA-GCTCATAGGATCCTGCTCG 368 ||| | |||||||| ||||||| || || ||||||||| | ||||||||||||||||| | Sbjct 1177 TGTGG-CGCTGTTTTTCGGTGGATTGGTTAGAATGTTG-ATGCTCATAGGATCCTGCTTG 1234 Query 369 TGGGTTCTTCTGCTGGT 385 ||||||| ||||||||| Sbjct 1235 TGGGTTCGTCTGCTGGT 1251 > AT5G38005.1 | Symbols: | other RNA | chr5:15155067-15156088 FORWARD LENGTH=545 Length=545 Score = 174 bits (94), Expect = 9e-43 Identities = 122/135 (90%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 250 AAGAGGTGCCGGAAAATCCACCGGAAGAGCTACTCTTACCGGCTTTGCTGAGGTCAAGGA 309 |||||||| || ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 142 AAGAGGTGTCGAAAAATCCACCGGAAGAGCTACTCTTACCGGCTTTGCTGAGGTCAACGA 201 Query 310 TGTCGTCGCTGTTTGTCGGTGGCTTTGTCAGAATGTTGGA-GCTCATAGGATCCTGCTCG 368 ||| | || ||||| |||||||||| || ||||||||| | ||||||||||||||||| | Sbjct 202 TGT-GACGATGTTTTTCGGTGGCTTGGTTAGAATGTTG-ATGCTCATAGGATCCTGCTTG 259 Query 369 TGGGTTCTTCTGCTG 383 ||||||| ||||||| Sbjct 260 TGGGTTCGTCTGCTG 274 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36269054134 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5