BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488861
Length=2173
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19670.1 | Symbols: | Exostosin family protein | chr5:66467... 3094 0.0
AT5G37000.1 | Symbols: | Exostosin family protein | chr5:14618... 67.6 5e-10
> AT5G19670.1 | Symbols: | Exostosin family protein | chr5:6646719-6649498
FORWARD LENGTH=2279
Length=2279
Score = 3094 bits (1675), Expect = 0.0
Identities = 1974/2114 (93%), Gaps = 38/2114 (2%)
Strand=Plus/Plus
Query 1 CTTCACTTTGGTCGGAGTTGTTTTGAAGATTCTTCCGTCGGTGCATCTCCATGTCTTTTC 60
|||||||| |||||||||||||||||||||||| |||| ||||||||| |||||||||||
Sbjct 42 CTTCACTTGGGTCGGAGTTGTTTTGAAGATTCTACCGTTGGTGCATCTTCATGTCTTTTC 101
Query 61 CACTTCAAGGGTTTC-AATTTACTCTGAATTGAGCAACGAATGTTTTCGGTTTCCAAATT 119
||||||||| ||||| |||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 102 CACTTCAAGAGTTTCAAATTTACTCTGAATTGAGCAACGAATGTTTCCGATTTCCAATTT 161
Query 120 AAGATCGAGATCGTTGGAAATTATGTCTTTCCA--tttttttttt-tt-tCGTGAATGTG 175
|||||| |||||||||||| ||||||||||||| |||||||||| || |||||||||||
Sbjct 162 AAGATCAAGATCGTTGGAATTTATGTCTTTCCAGCTTTTTTTTTTGTTCTCGTGAATGTG 221
Query 176 TCGGCAGGATAAGTTTTTGAAGCTTGTTGTTAAATACTTGAACTTGAATGTCTTT-TGGG 234
|||||||||| ||||||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct 222 TCGGCAGGATTAGTTTTTGAAGCTTGTTGTTAAATACTTGAACTTGAAGGT-TTTGTGGG 280
Query 235 TTTGAATCTGTGTAATTCC-TC--TCATGGAGATTATTAGATCTGAGCTCCGAAAACATT 291
||||||||||| || |||| || |||||||| |||||||||||||||||||||| |
Sbjct 281 TTTGAATCTGTATAGTTCCTTCTGTCATGGAG---GTTAGATCTGAGCTCCGAAAACAGT 337
Query 292 CACGAAGTGGAAAGAGGAAATGGGCTATTTTGGTTGGGATTATGGCCT-TTACTCATATC 350
||||||||||||||||||||||||||||||| ||||||||| ||| || |||||||||||
Sbjct 338 CACGAAGTGGAAAGAGGAAATGGGCTATTTTAGTTGGGATTGTGG-CTCTTACTCATATC 396
Query 351 TTGTTGTTACTTTCATATGGTGACGCCTTAAGATATCTTTTGCCTGATGGTAGAAGACTG 410
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 397 TTGTTATTACTTTCATATGGTGACGCCTTAAGATATCTGTTGCCTGATGGTAGAAGACTG 456
Query 411 AAACTTCCCAATGAGAACAATGC---GTTGATGACTCCATCGCGAAACACACTTGCGGTT 467
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 457 AAACTTCCCAATGAGAACAATGCGTTGTTGATGACTCCATCACGAAACACACTTGCGGTT 516
Query 468 AACTTTTCTGAGGATTCTGCAGGCTCGGGGATTCATGTCTTGGAGAAAAATGGGTATGTT 527
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 517 AACGTTTCTGAGGATTCTGCAGTCTCGGGGATTCATGTCTTGGAGAAAAATGGGTATGTT 576
Query 528 TCAGATTTTGGTCTAAGGAATGAGTCGGAAGATGATGAAGAAGGGTTTGTTGGAAATGTT 587
|||| ||||||||||||||||||||| | || ||||| |||||||||||||||||||||
Sbjct 577 TCAGGTTTTGGTCTAAGGAATGAGTCTG-AG--GATGATGAAGGGTTTGTTGGAAATGTT 633
Query 588 GATTTTGAGAGCTTTGAAGATGCAAAAGACAGTATCATCGTCAAAGAAGTTGCTGGAAGC 647
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 634 GATTTTGAGAGCTTTGAAGATGTGAAAGACAGTATCATCATCAAAGAAGTTGCTGGAAGC 693
Query 648 AGTGATAGTCTTTTTCCTACAGAGAAGACTGTAATGCAAAATGAGATTGTTTCAACCAGT 707
||||||| |||||||||| |||||| |||||||||||||| |||| ||||||||| |||
Sbjct 694 AGTGATAATCTTTTTCCTTCAGAGACTACTGTAATGCAAAAGGAGAGTGTTTCAACGAGT 753
Query 708 AATAATGGCCATCAGGTGCAATATGT-ATCGGTTCAAAGTCAGAAGAATTTGAAGAGCTC 766
|||||||| ||||||||||| |||| | ||||||||||||||||||| | || |||||
Sbjct 754 AATAATGGTTATCAGGTGCAAAATGTGA-CGGTTCAAAGTCAGAAGAACGTCAAAAGCTC 812
Query 767 TATGTCAAGTGCAGGCTCCTCCATAGCTGGTTCTGCATTTGGAAATAGTTCCTTGCTTGT 826
||| | ||||| ||||||||||| ||| || |||||| |||||||||||||||||||||
Sbjct 813 TATTTTAAGTGGGGGCTCCTCCATTGCTAGTCCTGCATCTGGAAATAGTTCCTTGCTTGT 872
Query 827 TACTAAGAAAGCGAGTAAGAAGAAGAAAATGCGGTGTGATCTTCCACCAAAATCTGTGAC 886
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 TTCTAAGAAAGTAAGTAAGAAGAAGAAAATGCGGTGTGATCTTCCACCAAAATCTGTGAC 932
Query 887 AACAATAGATGAGATGAATCGGATTTTAGCAAGGCACCGTAGAACTTCACGCGCAATG-G 945
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
Sbjct 933 AACAATAGATGAGATGAATCGGATATTAGCAAGGCACCGTAGAACTTCACGAGCAATGCG 992
Query 946 TA-TGTG-T-G-C--AGCTGAGAGATGAGGAGATATTGACTGCAAGGAAGGAGATAGAGA 999
| | | | | | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 993 -ACCGCGTTGGTCTTCGAGGAGAGATGAGGAGATATTGACTGCAAGGAAGGAGATAGAGA 1051
Query 1000 ATGCTCCTCCAGTTGCAACAA-GTGAACGGCAACTCTACCCTCCAATATTCCGTAATGTT 1058
||| |||| ||||||| || ||||||| | |||||||||||||||||||||||||||
Sbjct 1052 ATG---CTCCGGTTGCAA-AACTTGAACGGGAGCTCTACCCTCCAATATTCCGTAATGTT 1107
Query 1059 TCCATGTTTAAGAGGAGTTACGAACTTATGGAACGGATACTCAAGGTTTATGTATATAAG 1118
||| ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1108 TCCCTGTTTAAAAGGAGTTACGAACTTATGGAACGGATACTCAAAGTTTACGTATATAAG 1167
Query 1119 GAAGGAAACCGCCCTAT-TTTCCATACTCCGATACTCAAGGGATTGTATGCATCAGAGGG 1177
||||| |||||||| || ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1168 GAAGGGAACCGCCCCATCTTT-CATACTCCGATACTCAAGGGATTGTATGCATCAGAGGG 1226
Query 1178 ATGGTTCATGAAGTTGATGGAAGGAAACAAGCAGTACACTGTAAAGGACCCAAGAAAGGC 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 ATGGTTCATGAAGTTGATGGAAGGAAACAAGCAGTACACTGTAAAGGACCCAAGAAAGGC 1286
Query 1238 TCACTTGTACTATATGCCATTTAGTGCACGGATGCTAGAATACACACTTTATGTGCGTAA 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 TCACTTGTACTATATGCCATTTAGTGCACGGATGCTAGAATACACACTTTATGTGCGTAA 1346
Query 1298 TTCTCACAACCGAACTAATCTGCGCCAGTTTCTTAAGGAATATACAGAGCACATTAGTTC 1357
|||||||||||| ||||| || ||||||||||||||||||||||| |||||||| |||||
Sbjct 1347 TTCTCACAACCGCACTAACCTACGCCAGTTTCTTAAGGAATATACGGAGCACATCAGTTC 1406
Query 1358 CAAGTACCCTTTCTTCAATAGAACCGATGGAGCCGATCATTTTCTTGTTGCTTGTCATGA 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 CAAGTACCCTTTCTTCAATAGAACCGATGGAGCCGATCATTTTCTTGTTGCTTGTCATGA 1466
Query 1418 TTGGGCACCATATGAGACTAGGCACCACATGGAGCATTGCATTAAAGCTCTATGCAATGC 1477
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1467 TTGGGCACCATATGAGACTAGGCACCACATGGAGCATTGCATTAAAGCTTTATGCAATGC 1526
Query 1478 AGACGTAACCGCAGGCTTTAAAATTGGAAGAGACATCTCACTCCCTGAAACATACGTCCG 1537
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
Sbjct 1527 AGACGTAACCGCAGGCTTTAAGATTGGAAGAGACATCTCACTCCCTGAAACATATGTCAG 1586
Query 1538 AGCTGCCAAAAATCCACTTCGTGATTTGGGTGGAAAACCGCCGTCTCAGAGGCGGACTCT 1597
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1587 AGCCGCCAAAAATCCGCTTCGTGATTTGGGTGGAAAACCGCCGTCTCAGAGGCGGACCCT 1646
Query 1598 GGCTTTCTATGCTGGAAGCATGCACGGTTACTTGCGTCAGATTCTACTGCAGCATTGGAA 1657
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 1647 GGCTTTCTATGCTGGAAGCATGCACGGTTACTTACGTCAGATTCTGCTACAGCATTGGAA 1706
Query 1658 AGACAAAGACCCGGACATAAAAATCTTCGGGCGAATGCCATTTGGTGTGGCGAGCAAGAT 1717
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1707 AGACAAAGACCCGGACATGAAAATCTTCGGGCGAATGCCATTTGGTGTGGCGAGCAAGAT 1766
Query 1718 GAATTACATCGAGCAGATGAAAAGCAGCAAGTACTGCATTTGTCCTAAAGGGTACGAGGT 1777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1767 GAATTACATCGAGCAGATGAAAAGCAGCAAGTACTGCATTTGTCCTAAAGGGTACGAAGT 1826
Query 1778 CAACAGCCCAAGGGTGGTTGAATCGATTTTCTATGAGTGTGTCCCTGTGATTATATCCGA 1837
||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1827 CAACAGCCCGAGGGTGGTTGAATCGATTTTCTATGAGTGTGTCCCTGTGATCATCTCCGA 1886
Query 1838 CAACTTTGTGCCGCCTTTCTTTGAAGTTCTTGACTGGAGTGCGTTCTCAGTCATTGTTGC 1897
|||||||||||| |||||||| || |||||||| |||||||||||||| |||||||||||
Sbjct 1887 CAACTTTGTGCCACCTTTCTTCGAGGTTCTTGATTGGAGTGCGTTCTCGGTCATTGTTGC 1946
Query 1898 GGAGAAAGACATCCCGAGGTTGAAAGATATCTTGTTGTCGATACCAGAAGAGAAATACTT 1957
|||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |
Sbjct 1947 GGAGAAAGACATCCCGAGGTTGAAAGATATCTTGTTATCAATACCAGAAGACAAATACGT 2006
Query 1958 GAAGATGCAAATGGCGGTGAGAAAGGCGCAAAGGCACTTTCTGTGGCATGCTAAACCTGA 2017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2007 GAAGATGCAAATGGCGGTGAGAAAGGCGCAAAGGCACTTTCTGTGGCATGCTAAACCTGA 2066
Query 2018 GAAATACGATCTGTTTCATATGGTTTTGCATTCTATTTGGTATAACAGAGTGTTTCAAGC 2077
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2067 GAAATATGATCTGTTTCATATGGTTTTGCATTCTATTTGGTATAACAGAGTGTTCCAAGC 2126
Query 2078 AAAGCGTAGATGAT 2091
||||||||||||||
Sbjct 2127 AAAGCGTAGATGAT 2140
Score = 93.5 bits (50), Expect = 8e-18
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 2118 TAGCTATAAAGTTGACTCTACCTTTGTAAATATTGAGTCATAATTTTGTTCTAATT 2173
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2207 TAGCTACAAAGTTGACTCTACCTTTGTAAATATTGACTCATAATTTTGTTCTAATT 2262
> AT5G37000.1 | Symbols: | Exostosin family protein | chr5:14618107-14620282
FORWARD LENGTH=1644
Length=1644
Score = 67.6 bits (36), Expect = 5e-10
Identities = 42/45 (93%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 1378 GAACCGATGGAGCCGATCATTTTCTTGTTGCTTGTCATGATTGGG 1422
|||| | |||||| |||||||||||||||||||||||||||||||
Sbjct 995 GAACTGGTGGAGCTGATCATTTTCTTGTTGCTTGTCATGATTGGG 1039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107780570115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5