BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488862
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19680.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 2141 0.0
> AT5G19680.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr5:6649605-6651935 FORWARD LENGTH=1416
Length=1416
Score = 2141 bits (1159), Expect = 0.0
Identities = 1289/1352 (95%), Gaps = 7/1352 (1%)
Strand=Plus/Plus
Query 1 AAAAGCCATGAACAGTGAGAAGGAAGACGAGCCATTGGAAGAGATCGGCGATTCGAGTAA 60
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 52 AAAAACCATGAACAGTGAGAAGGAAGACGAGCCATTGGAAGAGATCGGCGATTCGAATAA 111
Query 61 TGTTCTCGATCTCACTAGCTATCAGCTCCACAGTCTCGATACGGTGGAGTTACCGCCGAC 120
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 112 TGTTCTCGATCTCACTAGCTATCAGCTCCACAGTCTCGATACGGTCGAGTTACCGCCGAA 171
Query 121 CCTGATTGAGCTGGACCTAACGGCGAACCGTTTGTCGGGATTGGACTCGAGGATCGCTCA 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 172 CCTGATTGAGCTGGACCTTACGGCGAACCGTTTGTCGGGATTGGACTCGAGGATCGCTCA 231
Query 181 GCTCTCGACGCTCAAGAAGCTTTCTCTTCGCCAGAACCTAATTGATGATTCCGCCGTCGA 240
|||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 232 GCTCTCCACGCTTAAGAAGCTTTCTCTCCGCCAAAACCTAATTGATGATTCCGCCGTCGA 291
Query 241 ACCGTTGTCTCACTGGGACGCCTTGTCCGATCTCGAGGAGTTAGTTCTCAGAGACAACAA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 292 ACCGTTGTCTCACTGGGACGCCTTGTCCGATCTCGAGGAGTTAGTTCTCAGAGATAACAA 351
Query 301 GCTCGCAAAAGTACCAGATATCAACATATTCACGAAGCTTTTGGTTTTCGACATATCTTT 360
||| || |||||||||||| ||| ||||||||||||||||||||||| ||||||||||||
Sbjct 352 GCTAGCGAAAGTACCAGATGTCAGCATATTCACGAAGCTTTTGGTTTACGACATATCTTT 411
Query 361 CAATGAAATCACTTCGTTGGAAGGAACATCCAAGGCATCTAGCACACTGAAGGAACTCTA 420
||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 412 CAATGAAATCACTTCTTTGGAAGGAATATCCAAGGCCTCTAGCACACTGAAGGAACTCTA 471
Query 421 TGTGTCTAAAAATGAAGTTAACAAGATTGTGGAGATCGAACACTTACATAACTTGCAGAT 480
|||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||
Sbjct 472 TGTGTCTAAAAATGAAGTTAACAAGATTATGGAGATTGAACACTTACACAACTTGCAGAT 531
Query 481 TCTTGAACTGGGGTCTAATAGATTGCGGGTAATGGAAAATCTGGAAAACTTCACAAAATT 540
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 532 TCTTGAACTGGGGTCTAATAGATTGCGGGTGATGGAAAATCTGGAAAACTTCACAAAATT 591
Query 541 AGAAGAATTATGGCTCGGAAGAAACCGTATCAAAGTTGTCAACCTGTGTGGGCTCAAATG 600
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 592 AGAAGAACTATGGCTCGGAAGAAACCGTATCAAAGTTGTTAACCTGTGTGGGCTCAAATG 651
Query 601 CATAAAAAAGATTAGCTTGCAGAGCAATCGATTGACCTCTATGAAAGGATTTGAGGAATG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CATAAAAAAGATTAGCTTGCAGAGCAATCGATTGACCTCTATGAAAGGATTTGAGGAATG 711
Query 661 TGTTGCTCTTGAAGAGTTATATTTGAGCCATAATGGTATCTCCAAAATGGAAGGCTTGAG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TGTTGCTCTTGAAGAGTTATATTTGAGCCATAATGGTATCTCCAAAATGGAAGGCTTGAG 771
Query 721 TGCATTGGTCAACCTACGGGTATTGGACGTGTCGAACAACAAGCTTACTTCAGTTGATGA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TGCATTGGTCAACCTACGGGTATTGGACGTGTCGAACAACAAGCTTACTTCAGTTGATGA 831
Query 781 CATTCAGAACCTCACAAAGTTGGAAGATTTATGGCTTAATGACAACCAGATAGAATCACT 840
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 832 CATTCAGAACCTCACAAAGTTGGAAGATTTGTGGCTTAATGACAACCAGATAGAATCACT 891
Query 841 TGAAGCAATCACAGAAGCTGTTACAGGATCGAAAGAGAAGCTTACCACTATCTACCTCGA 900
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 892 GGAAGCAATCACAGAAGCTGTTACAGGATCTAAAGAGAAGCTTACCACTATCTACCTCGA 951
Query 901 AAATAACCCTTGTGCCAAGTCTTCTGATTATGTTGCTGTGGTCAGACAAATCTTCCCGAA 960
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 952 AAATAACCCTTGTGCCAAGTCTTCTGATTATGTTGCTGCGGTCAGACAAATCTTCCCGAA 1011
Query 961 TGTGGAGCAAATAGATTCTAACTTATTTGCTTAGAGATGGATATATTCCTTGTCGTGCTT 1020
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 TGTGGAGCAAATTGATTCTAACTTATTTGCTTAGAGATGGATATATTCCTTGTCGTGCTG 1071
Query 1021 TTT-TATGAGTGTCTGCTTCCTCATTG-A-GAGCATGGGCATCGAATTCAGGAAATCAGG 1077
||| ||||| ||||||||||||||| | | |||||||||||||||| |||||||||||
Sbjct 1072 TTTGTATGAATGTCTGCTTCCTCATCCCATGGGCATGGGCATCGAATTTAGGAAATCAGG 1131
Query 1078 TAAAACACAGATTCCTCGAAATATACATGTGTCTGGTGTTCATCATAAAGTAGTGCAAAT 1137
|| ||||| |||||||| ||||||||||||||||| |||| ||||||||| |||||||||
Sbjct 1132 TACAACACGGATTCCTCAAAATATACATGTGTCTGCTGTTTATCATAAAGAAGTGCAAAT 1191
Query 1138 GAGCTAATGAAATCACTCTCGTCATGGATATTTATCAAAACGTTTT-GAAATTCAAGTGT 1196
|||| ||| ||||| |||||||||||||||||||| |||||||||| ||||||| |||||
Sbjct 1192 GAGCAAATTAAATCGCTCTCGTCATGGATATTTATTAAAACGTTTTTGAAATTCTAGTGT 1251
Query 1197 TTCCTTGCAAGTAAACCAATACTTGTTTTTGGTCTGTAACAGTATGTGGACTTTGTCTGT 1256
| |||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||
Sbjct 1252 TCCCTTGCAAGTAAACCAATTCTTGTTTTTGGTCTGTAATAGTATGTGGACTGTGTCTGT 1311
Query 1257 AAAAGGGAATCCCCGAGTTTGAGGTGGTCTTTGTTCCAAGTTTCAACC-A-A-CACTAAT 1313
|||||||||||||||||| ||| || ||||||||| |||||||||||| | | ||||||
Sbjct 1312 AAAAGGGAATCCCCGAGTCTGAAGTTGTCTTTGTTTCAAGTTTCAACCGAGAACACTAAC 1371
Query 1314 TTGAATACTTTGATTCATATTTTTGACTTTGC 1345
|||||||||||||| |||||||||||||||||
Sbjct 1372 TTGAATACTTTGATCCATATTTTTGACTTTGC 1403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66214518855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5