BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488866
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19730.1 | Symbols: | Pectin lyase-like superfamily protein... 2065 0.0
> AT5G19730.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:6670458-6673282 FORWARD LENGTH=1336
Length=1336
Score = 2065 bits (1118), Expect = 0.0
Identities = 1282/1358 (94%), Gaps = 24/1358 (2%)
Strand=Plus/Plus
Query 1 AGCCATATATTGTTTTGGTCCTACTTTGTAACTTTGGcaaacacaacaaaaaacaaaaac 60
||||||||||| |||||||| ||||||||| |||||||||| || |||||||||||||||
Sbjct 1 AGCCATATATTTTTTTGGTCGTACTTTGTATCTTTGGCAAA-AC-ACAAAAAACAAAAAC 58
Query 61 agaaaaaaaaaaCTCCTTAT-TCTTTTGTATTTGATTCTAATTGTCGTATAGATGCCCAA 119
||||||||||||||| | ||||||||||||| |||||||||||||||||||||||
Sbjct 59 -----AAAAAAACTCCTTATAT-TTTTGTATTTGATGCTAATTGTCGTATAGATGCCCAA 112
Query 120 ATTCAATTCAACCCAAGCTCCCAATTTATTTCTTCTCCTTCTCCTCCTTCTCGTTATCCT 179
| |||||||||||||||||||||||||| | ||| | | |||||||||||||||||
Sbjct 113 ACTCAATTCAACCCAAGCTCCCAATTTA-----T-TCC-T-T-CTCCTTCTCGTTATCCT 163
Query 180 TCTGTGTTCAACGCAAACAAAATGCCACACCAAAGGTCTACGATTACGACCAAGAAACCA 239
||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 164 TCTTTGTTCAACGCAAACACAATGCCACACCAAAGGTCTCCGATTACGACCAAGAAACCA 223
Query 240 GAAGAATGTGAACACGACGAGCGATCGGACACAAAACCCGGAAGATGAGTTCATGAAATG 299
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 224 GAAGAATATGAACACGACGAGTGATCGGACACAAAACCCGGAAGATGAGTTCATGAAATG 283
Query 300 GGTAAGATTCGTTGGAAGCCTTAAACACTCAGTGTTCAAGGCAGCCAAGAACAAACTCTT 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 GGTGAGATTCGTTGGAAGCCTTAAACACTCAGTGTTCAAGGCAGCCAAGAACAAACTCTT 343
Query 360 CCCTTCTTATACACTAACTGTCCACAAGAAATCCAATAAAGGTGACTTCACTAAAATCCA 419
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 CCCTTCTTATACATTAACTGTCCACAAGAAATCCAATAAAGGTGACTTCACTAAAATCCA 403
Query 420 AGACGCCATTGATTCTCTCCCTCTCATCAACTTTGTTCGTGTCGTCATCAAAGTCCATGC 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 404 AGACGCCATTGATTCTCTCCCTCTCATCAACTTTGTTCGTGTCGTCATCAAAGTTCATGC 463
Query 480 CGGAGTTTACAAGGAGAAGGTGAACATACCCCCAATGAAGGCATTCATAACAATAGAAGG 539
||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||
Sbjct 464 CGGAGTTTACAAGGAGAAGGTGAGCATACCCCCACTGAAGGCATTTATAACAATAGAAGG 523
Query 540 AGAAGGAGCAGAGAAGACAACAGTGGAATGGGGAGACACAGCACAAACCCCTGACTCAAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 AGAAGGAGCAGAGAAGACAACAGTGGAATGGGGAGACACAGCACAAACCCCTGACTCAAA 583
Query 600 AGGCAACCCCATGGGCACTTACAACTCGGCCTCCTTCGCCGTCAACTCTCCTTTCTTTGT 659
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 584 AGGCAACCCCATGGGCACTTACAACTCGGCCTCGTTCGCGGTCAACTCTCCTTTCTTTGT 643
Query 660 CGCTAAGAACATCACTTTCAAGAATACGACCCCAGTCCCCTTACCGGGCGCAGTTGGAAA 719
||||||||| ||||| |||| ||| ||||||||||||||||| || || |||||||| ||
Sbjct 644 CGCTAAGAATATCACATTCAGGAACACGACCCCAGTCCCCTTGCCCGGTGCAGTTGGTAA 703
Query 720 ACAGGCGGTGGCATTGAGAGTTTCGGCAGACAATGCCGCATTTTTCGGGTGTAGAATGCT 779
||||||||| |||||||| || ||||||||||||||||| ||||| ||||||||||||||
Sbjct 704 ACAGGCGGTAGCATTGAGGGTGTCGGCAGACAATGCCGCGTTTTTTGGGTGTAGAATGCT 763
Query 780 TGGTGCTCAAGACACTCTCTATGACCATTTGGGAAGACATTATTACAAAGATTGTTACAT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 TGGTGCTCAAGACACTCTCTATGACCATTTGGGAAGACATTATTACAAAGATTGTTACAT 823
Query 840 TGAGGGATCAGTTGACTTCATCTTTGGCAATGCCCTTTCTCTGTATGAGGGGTGTCACGT 899
|||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||
Sbjct 824 TGAGGGATCAGTGGACTTCATCTTTGGAAATGCCCTTTCTCTTTATGAAGGGTGCCACGT 883
Query 900 GCACGCGATAGCGGATAAGCTAGGAGCAGTGACGGCACAGGGAAGGAGCAGTGTGCTAGA 959
||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 884 GCATGCGATAGCGGATAAGCTAGGAGCAGTGACGGCACAGGGGAGGAGCAGTGTTCTAGA 943
Query 960 GGACACCGGATTCTCTTTCGTAAAATGTAAGGTGACAGGGACAGGGGTTTTATATCTTGG 1019
||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 944 GGACACCGGATTCTCGTTCGTAAAGTGTAAGGTGACAGGGACAGGGGTTTTGTATCTTGG 1003
Query 1020 GAGGGCATGGGGTCCCTTCTCAAGAGTCGTCTTTGCTTACACTTATATGGACAACATCAT 1079
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1004 GAGGGCATGGGGTCCCTTCTCAAGAGTCGTTTTTGCTTACACTTACATGGACAACATCAT 1063
Query 1080 CCTCCCTAGAGGCTGGTACAATTGGGGCGACCCTTCACGCGAGATGACGGTGTTCTATGG 1139
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 1064 CCTCCCTAGAGGCTGGTACAATTGGGGAGACCCTTCCCGTGAGATGACGGTGTTCTATGG 1123
Query 1140 GCAGTACAAGTGCACGGGAGCAGGAGCAAACTATGGAGGGAGGGTGGCTTGGGCAAGAGA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 GCAGTACAAGTGCACGGGAGCAGGAGCAAACTATGGAGGGAGGGTGGCTTGGGCAAGAGA 1183
Query 1200 GCTCACCGACGAAGAAGCTAAGCCTTTTCTTTCTCTTACCTTTATCGACGGCTCTGAATG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 GCTCACCGACGAAGAAGCTAAGCCTTTTCTTTCTCTTACCTTTATCGACGGCTCTGAATG 1243
Query 1260 GATCAAACTCTAACCAT-TACACCtttttttGTCGTTTTAATTTTCCACCTAATTAATAA 1318
||||||||||||||||| ||||||||||||| | ||| ||| |||||||||||||||
Sbjct 1244 GATCAAACTCTAACCATATACACCTTTTTTTAT--TTTC--TTT-CCACCTAATTAATAA 1298
Query 1319 TGTTCATTTTCCCCTTAATAAAATAAAAACAATTTTTT 1356
||| ||||||||| ||||||||||||||| ||||||||
Sbjct 1299 TGTACATTTTCCCTTTAATAAAATAAAAATAATTTTTT 1336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66766724850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5