BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488869
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19760.1 | Symbols: | Mitochondrial substrate carrier famil... 1812 0.0
> AT5G19760.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr5:6679306-6682001 REVERSE LENGTH=1338
Length=1338
Score = 1812 bits (981), Expect = 0.0
Identities = 1144/1217 (94%), Gaps = 34/1217 (3%)
Strand=Plus/Plus
Query 1 TTCATCGtctcctctccaccaccaagtgaatctc-tt-tctctctctttttctccgcgga 58
||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||
Sbjct 42 TTCATCGTCTCCTCT---CCACCAAGTGAATCTCTTTCTCTCTCTCTTTTTCTCCGCGGA 98
Query 59 aggaatctcttctttctGGTTGCGTTTGAGTCCGTACGAAAA-ACAA-AAAGGAGAGAGA 116
|||||||||||| ||||||||||||||||||||||||||||| | || ||| ||||||||
Sbjct 99 AGGAATCTCTTC-TTCTGGTTGCGTTTGAGTCCGTACGAAAACAAAAGAAAAGAGAGAGA 157
Query 117 TGTCGGAAGAGAAGAAAGCTCCAATTAGTGTCTGGACTACCGTGAAGCCCTTCGTCAATG 176
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 158 TGGCGGAAGAGAAGAAAGCTCCAATCAGTGTCTGGACTACCGTGAAGCCCTTCGTCAATG 217
Query 177 GCGGAGCCTCTGGTATGCTCGCTACTTGCGTTATCCAGCCGATCGACATGATCAAGGTGA 236
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 218 GCGGTGCCTCTGGTATGCTCGCTACTTGCGTTATCCAGCCGATCGACATGATTAAGGTGA 277
Query 237 GGATTCAACTAGGTCAGGGATCTGCAGCTAGTATAACCACGAACATGCTTAAGAATGAGG 296
|||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 278 GGATTCAACTTGGTCAGGGATCTGCAGCCAGTATAACCACCAACATGCTTAAGAATGAGG 337
Query 297 G-TTTCGGTGCCTTCTACAAGGGATTATCTGCTGGTTTGCTGAGGCAAGCAACTTACACC 355
| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 338 GCGTT-GGTGCCTTCTACAAGGGATTATCTGCTGGGTTGCTGAGGCAAGCAACTTACACG 396
Query 356 ACAGCCCGTCTTGGATCATTCAAGTTGCTGACTGCAAAGGCAATTGAGTCTAACGATGGA 415
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 397 ACAGCCCGTCTTGGATCATTCAAGTTGCTGACTGCAAAGGCAATTGAGTCTAATGATGGA 456
Query 416 AAGCCTCTACCGCTGTATCAGAAGGCTCTATGTGGTCTGACAGCTGGTGCTATTGGTGCT 475
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 457 AAGCCTCTACCGCTGTATCAGAAGGCACTATGTGGTCTGACAGCTGGTGCTATTGGTGCT 516
Query 476 TGTGTTGGTAGTCCAGCCGATCTTGCACTTATCAGAATGCAAGCTGATAATACTTTGCCG 535
|| || ||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 517 TGCGTCGGTAGTCCAGCCGATCTAGCACTTATCAGAATGCAGGCCGATAATACTTTGCCG 576
Query 536 TTAGCTCAGCGCAGGAATTATACCAATGCCTTCCATGCGCTTTA-CCGTATTAGCGCTGA 594
|||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct 577 CTAGCTCAGCGCAGGAATTATACCAATGCTTTCCATGCGC-TTACCCGTATTAGCGCTGA 635
Query 595 TGAAGGAGTTTTAGCACTTTGGAAAGGATGTGGGCCCACTGTGGTCAGAGCTATGGCTTT 654
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 636 TGAGGGAGTTTTAGCACTTTGGAAAGGGTGTGGGCCCACTGTGGTCAGAGCTATGGCTTT 695
Query 655 GAACATGGGAATGCTTGCATCTTATGATCAAAGTGCTGAATACATGAGAGATAATCTTGG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 GAACATGGGAATGCTTGCATCTTATGATCAAAGTGCTGAATACATGAGAGATAATCTTGG 755
Query 715 TCTCGGGGAGATGTCTACGGTCGTAGGGGCAAGTGCTGTTTCGGGGTTCTGCGCTGCGGC 774
| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 756 TTTCGGGGAGATGTCTACGGTCGTAGGAGCAAGTGCTGTTTCTGGGTTCTGCGCTGCGGC 815
Query 775 TTGCAGTCTGCCATTTGACTTTGTCAAAACTCAGATTCAGAAAATGCAACCGGATGCTCA 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 TTGCAGTCTGCCATTTGACTTTGTCAAAACTCAGATTCAGAAAATGCAACCGGATGCTCA 875
Query 835 GGGAAAATATCCATACACAGGTTCACTTGATTGTGCGATGAAAACCTTAAAAGAAGGGGG 894
||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 876 AGGAAAGTATCCATACACAGGTTCGCTCGATTGTGCGATGAAAACCTTAAAAGAAGGAGG 935
Query 895 ACCTCTGAAATTTTACTCAGGTTTCCCTGTTTACTGTGTCAGGATTGCCCCTCACGTCAT 954
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 936 ACCTCTGAAATTTTACTCGGGTTTCCCAGTTTACTGTGTCAGGATTGCCCCTCACGTCAT 995
Query 955 GATGACATGGATCTTCCTGAACCAGATTACGAAACTTCAAAAGAAGATTGGTATGTGA-- 1012
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 996 GATGACATGGATCTTCCTAAACCAGATTACGAAATTTCAAAAGAAGATTGGTATGTGAGG 1055
Query 1013 AA-AA-TA-AG-A---------T--GA-GA-A-GAACGAAAACACAATTGGAATTGTGTT 1054
|| || || || | | || || | |||||||||||||||||||||||||||
Sbjct 1056 AACAAATACAGCAGCAAAAAAATAAGATGAGAAGAACGAAAACACAATTGGAATTGTGTT 1115
Query 1055 CATTTGCTTTTTAATCATATACATAACCTGCCTTAAAAGCGTATTATTGTAGCTGTTTGA 1114
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1116 CATTTGCTTTTTAATCATATACATAACCTGCCTTAAAAGCATATTATTGTAGCTGTTTGA 1175
Query 1115 AACTTTGATTTTTTGTTTCGGTCGGTGATTGGTCCGGTGAATTATAAAATTTTCTTCTTT 1174
| |||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1176 A-CTTTAATTTTTTGTTTCGGTCGGTGATTGGTCCGGTGAATTTTAAA-TTTTCTTCTTT 1233
Query 1175 GGTGGAAGTTGAAGACA 1191
|||||||||| ||||||
Sbjct 1234 GGTGGAAGTTTAAGACA 1250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58483634925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5