BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488871
Length=1693
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19780.1 | Symbols: TUA5 | tubulin alpha-5 | chr5:6687074-66... 2497 0.0
AT5G19770.1 | Symbols: TUA3 | tubulin alpha-3 | chr5:6682493-66... 2440 0.0
> AT5G19780.1 | Symbols: TUA5 | tubulin alpha-5 | chr5:6687074-6689171
FORWARD LENGTH=1736
Length=1736
Score = 2497 bits (1352), Expect = 0.0
Identities = 1605/1722 (93%), Gaps = 38/1722 (2%)
Strand=Plus/Plus
Query 1 ATAAACCTAATTTGCCAACGAAGTTAAACCaaaaaaaGAAGATCT--CGCTCACCGCC-T 57
||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||| |
Sbjct 1 ATAAACCTAATTTGCCAACGAAGTTGAACCAAAAAAAGAAGATCTCACTCTCACCGCCTT 60
Query 58 CATTTCCTCGATCTCCGTTTTCCTCATTCTCCGTGC-GTCGCAGAGCATCGCTCGAATTA 116
|||||||||||||||||| |||||| |||||||| | |||||||||||||||||||||||
Sbjct 61 CATTTCCTCGATCTCCGTCTTCCTCCTTCTCCGT-CTGTCGCAGAGCATCGCTCGAATTA 119
Query 117 GGGTTTCTGCTGTGCGAAGATGAGGGAAATCATAAGCATTCATATCGGACAAGCTGGGAT 176
|||||||||||| | ||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 120 GGGTTTCTGCTGAGAGAAGATGAGGGAAATTATTAGCATTCATATCGGACAAGCCGGGAT 179
Query 177 CCAGGTCGGAAATTCGTGCTGGGAGCTTTACTGTCTCGAACATGGAATCCAGCCCGACGG 236
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CCAAGTCGGAAATTCCTGCTGGGAGCTTTACTGTCTCGAACATGGAATCCAGCCCGACGG 239
Query 237 AATGATGCCGAGTGATACTACAGTTGGTGTTGCACACGATGCGTTCAACACTTTCTTTAG 296
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 AATGATGCCGAGTGATACTACAGTTGGTGTTGCACACGATGCGTTCAATACTTTCTTTAG 299
Query 297 CGAGACTGGCGCTGGGAAGCATGTTCCTAGGGCTGTCTTCGTTGATCTTGAGCCTACTGT 356
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 300 CGAGACTGGAGCTGGGAAGCATGTTCCTAGGGCTGTCTTCGTTGATCTCGAGCCTACCGT 359
Query 357 TATCGACGAAGTTCGTACTGGTACTTACCGTCAGCTTTTCCATCCTGAGCAGCTTATCTC 416
||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||
Sbjct 360 TATCGACGAAGTTCGTACTGGTACTTACCGTCAACTTTTCCATCCAGAGCAGCTCATTTC 419
Query 417 TGGTAAAGAAGATGCTGCCAACAACTTCGCTAGAGGCCATTACACAGTTGGAAAGGAAAT 476
||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 420 TGGGAAAGAAGATGCTGCTAACAACTTCGCTAGAGGACATTACACTGTTGGAAAGGAAAT 479
Query 477 TGTGGATCTATGCCTTGACCGTGTGAGGAAACTTGCCGACAATTGTACTGGCTTACAAGG 536
|||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 480 TGTGGATCTATGTCTTGACCGTGTGAGGAAGCTTGCCGACAACTGTACTGGCTTACAAGG 539
Query 537 ATTTTTGGTGTTCAATGCTGTTGGTGGTGGAACTGGTTCTGGATTGGGTTCTCTGTTGTT 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 540 GTTTTTGGTGTTCAATGCTGTTGGTGGTGGAACTGGTTCTGGATTGGGTTCTCTGTTGCT 599
Query 597 AGAACGTTTGTCTGTAGATTATGGAAAGAAGTCTAAGCTTGGTTTCACCATTTACCCTTC 656
||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 600 AGAGCGTTTGTCTGTAGATTACGGAAAGAAGTCTAAGCTTGGTTTTACCATATACCCTTC 659
Query 657 TCCTCAGGTTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTTCTCTCAACGCATTCCCT 716
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 660 TCCTCAGGTTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTGCTTTCAACGCATTCCCT 719
Query 717 TCTTGAACATACCGATGTAGCTGTCCTCTTGGATAACGAAGCCATCTATGATATTTGCCG 776
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 TCTTGAACATACCGATGTAGCTGTCCTCTTGGATAACGAAGCCATCTATGACATTTGCCG 779
Query 777 CAGATCCCTAGATATCGAGAGGCCAACCTACACAAACTTGAACAGGTTGATATCACAGAT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CAGATCCCTAGATATCGAGAGGCCAACCTACACAAACTTGAACAGGTTGATATCACAGAT 839
Query 837 CATTTCATCCTTGACAACATCGTTGAGGTTTGATGGAGCCATCAATGTGGATATCACTGA 896
||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 840 CATTTCATCCTTGACAACATCTTTGAGGTTTGATGGTGCCATCAACGTGGATATCACTGA 899
Query 897 GTTCCAGACCAATCTTGTCCCATATCCCCGTATCCATTTCATGCTGTCATCTTATGCACC 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GTTCCAGACCAATCTTGTCCCATATCCCCGTATCCATTTCATGCTGTCATCTTATGCACC 959
Query 957 AGTCATCTCAGCCGCAAAAGCTTACCATGAACAGTTATCAGTCCCTGAGATCACCAATGC 1016
||||||||||||||| || |||||||| || ||| |||||||||||||||||||||||||
Sbjct 960 AGTCATCTCAGCCGCCAAGGCTTACCACGAGCAGCTATCAGTCCCTGAGATCACCAATGC 1019
Query 1017 CGTGTTTGAGCCAGCTAGCATGATGGCAAAGTGTGACCCGAGGCACGGAAAGTACATGGC 1076
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1020 CGTGTTTGAGCCAGCGAGCATGATGGCAAAGTGTGACCCAAGGCACGGAAAGTACATGGC 1079
Query 1077 ATGTTGTTTGATGTACCGTGGAGATGTTGTTCCCAAAGATGTTAATGCTGCTGTTGGCAC 1136
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1080 ATGTTGTTTGATGTACCGAGGAGATGTTGTTCCCAAAGATGTTAATGCTGCCGTTGGCAC 1139
Query 1137 CATCAAGACAAAGAGGACTGTACAGTTTGTTGACTGGTGCCCGACTGGGTTCAAATGTGG 1196
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1140 CATCAAGACAAAGAGGACTGTTCAGTTTGTTGACTGGTGCCCAACTGGGTTCAAATGTGG 1199
Query 1197 AATCAACTACCAACCTCCAACAGTCGTTCCAGGAGGCGACCTTGCTAAAGTCCAGAGAGC 1256
|||||||||||||||||||||||| |||||||| || ||||| ||||| || ||||||||
Sbjct 1200 AATCAACTACCAACCTCCAACAGTTGTTCCAGGTGGTGACCTCGCTAAGGTTCAGAGAGC 1259
Query 1257 TGTGTGCATGATCAGTAACAACACAGCAGTTGCGGAGGTGTTCTCACGGATCGACCACAA 1316
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1260 TGTATGCATGATCAGTAACAACACAGCAGTTGCAGAGGTGTTCTCACGGATCGACCACAA 1319
Query 1317 GTTTGATCTCATGTATGCGAAGAGGGCATTCGTACACTGGTACGTCGGTGAAGGAATGGA 1376
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1320 GTTTGATCTCATGTATGCGAAGAGGGCATTCGTGCACTGGTACGTTGGTGAAGGAATGGA 1379
Query 1377 GGAAGGTGAATTCTCCGAGGCACGTGAAGACTTGGCCGCACTGGAGAAAGATTACGAAGA 1436
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1380 GGAAGGTGAATTCTCTGAGGCACGTGAAGACTTGGCCGCACTGGAGAAAGACTACGAAGA 1439
Query 1437 AGTTGGTGCCGAAGGTGGAGATGATGAAGAAGATGAAGGTGAAGACTACTGACACCTTTT 1496
||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1440 AGTTGGTGCTGAAGGTGGAGACGATGAAGAAGATGAAGGTGAAGACTATTGACACCTTTT 1499
Query 1497 CTCaaaaaaaaaaaaaaCTGCAACCAAAAAGTTTTTTCGTTGATCTGTTATCACTTT-TG 1555
||||| || ||| ||||||||||||||||||| ||||||| ||| || ||
Sbjct 1500 CTCAAGCAATG-------TGCTACCAAAAAGTTTTTTCGTTTATCTGTTTTCA-TTAATG 1551
Query 1556 ATTCTTGTTGATT----GTTT-T---AATCCTGTACAATATTCGTTCGGCCTTCGTGTTT 1607
||||||||||||| |||| | |||||||||||||||||| || |||||||||||
Sbjct 1552 ATTCTTGTTGATTACATGTTTGTTTTAATCCTGTACAATATTCGATCCTCCTTCGTGTTT 1611
Query 1608 TATCTCGGTTGGATACATTTTCATTGGTAGAG------T----------CCCGAGTTCAT 1651
||||||||| ||||||||||||||||||||| | |||||||||||
Sbjct 1612 CATCTCGGTTAGATACATTTTCATTGGTAGAGCGACCATTGGGGAAGATCCCGAGTTCAT 1671
Query 1652 TATCAAGCTTTTGTTGTACCAAACCTTTATTATCTTCTTACA 1693
||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1672 TATCAAGCTTTTGTTGTACGAAACCTTCATTATCTTCTTACA 1713
> AT5G19770.1 | Symbols: TUA3 | tubulin alpha-3 | chr5:6682493-6684579
REVERSE LENGTH=1726
Length=1726
Score = 2440 bits (1321), Expect = 0.0
Identities = 1539/1640 (94%), Gaps = 31/1640 (2%)
Strand=Plus/Plus
Query 76 TTTCCTC-ATTCTCCGTGCGTCGCAG-AGC--ATCGCTCG-AATTAGGGTTTCTGCTGTG 130
||||||| ||||||||| ||||| || ||| |||||||| ||||||||||||| ||| |
Sbjct 41 TTTCCTCAATTCTCCGTCCGTCGAAGAAGCGAATCGCTCGAAATTAGGGTTTCTACTGAG 100
Query 131 CGAAGATGAGGGAAATCATAAGCATTCATATCGGACAAGCTGGGATCCAGGTCGGAAATT 190
||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 101 AGAAGATGCGAGAAATCATAAGCATTCACATCGGACAAGCTGGGATCCAGGTCGGAAATT 160
Query 191 CGTGCTGGGAGCTTTACTGTCTCGAACATGGAATCCAGCCCGACGGAATGATGCCGAGTG 250
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 161 CGTGTTGGGAGCTTTACTGTCTCGAACATGGAATCCAGCCGGACGGAATGATGCCGAGTG 220
Query 251 ATACTACAGTTGGTGTTGCACACGATGCGTTCAACACTTTCTTTAGCGAGACTGGCGCTG 310
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 221 ATACTACAGTTGGTGTTGCACACGATGCGTTCAATACTTTCTTTAGCGAGACTGGTGCTG 280
Query 311 GGAAGCATGTTCCTAGGGCTGTCTTCGTTGATCTTGAGCCTACTGTTATCGACGAAGTTC 370
|||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 281 GGAAGCATGTCCCTAGGGCTGTCTTCGTTGATCTCGAGCCTACCGTTATCGACGAAGTTC 340
Query 371 GTACTGGTACTTACCGTCAGCTTTTCCATCCTGAGCAGCTTATCTCTGGTAAAGAAGATG 430
||||||||||||||||||| ||||||||||| |||||||| || ||||| ||||||||||
Sbjct 341 GTACTGGTACTTACCGTCAACTTTTCCATCCAGAGCAGCTCATTTCTGGGAAAGAAGATG 400
Query 431 CTGCCAACAACTTCGCTAGAGGCCATTACACAGTTGGAAAGGAAATTGTGGATCTATGCC 490
|||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |
Sbjct 401 CTGCTAACAACTTCGCTAGAGGACATTACACTGTTGGGAAGGAAATTGTGGATCTATGTC 460
Query 491 TTGACCGTGTGAGGAAACTTGCCGACAATTGTACTGGCTTACAAGGATTTTTGGTGTTCA 550
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 461 TTGACCGTGTGAGGAAACTTGCCGACAACTGTACTGGCTTACAAGGGTTTTTGGTGTTCA 520
Query 551 ATGCTGTTGGTGGTGGAACTGGTTCTGGATTGGGTTCTCTGTTGTTAGAACGTTTGTCTG 610
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 521 ATGCTGTTGGTGGTGGAACTGGTTCTGGATTGGGTTCTCTGTTGCTAGAGCGTTTGTCTG 580
Query 611 TAGATTATGGAAAGAAGTCTAAGCTTGGTTTCACCATTTACCCTTCTCCTCAGGTTTCTA 670
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 581 TAGATTATGGAAAGAAGTCTAAGCTTGGTTTTACCATATACCCTTCTCCTCAGGTTTCTA 640
Query 671 CTGCTGTTGTAGAGCCTTACAACAGTGTTCTCTCAACGCATTCCCTTCTTGAACATACCG 730
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 641 CTGCTGTTGTAGAACCTTACAACAGTGTTCTCTCAACGCATTCCCTTCTTGAACATACGG 700
Query 731 ATGTAGCTGTCCTCTTGGATAACGAAGCCATCTATGATATTTGCCGCAGATCCCTAGATA 790
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 701 ATGTAGCTGTCCTCTTGGATAACGAAGCCATCTATGACATTTGCCGCAGATCCCTAGATA 760
Query 791 TCGAGAGGCCAACCTACACAAACTTGAACAGGTTGATATCACAGATCATTTCATCCTTGA 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 TCGAGAGGCCAACCTACACAAACTTGAACAGGTTGATATCACAGATCATTTCATCCTTGA 820
Query 851 CAACATCGTTGAGGTTTGATGGAGCCATCAATGTGGATATCACTGAGTTCCAGACCAATC 910
||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 821 CAACATCTTTGAGGTTTGATGGTGCCATCAACGTGGATATCACTGAGTTCCAGACCAATC 880
Query 911 TTGTCCCATATCCCCGTATCCATTTCATGCTGTCATCTTATGCACCAGTCATCTCAGCCG 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 TTGTCCCATATCCCCGTATCCATTTCATGCTGTCATCTTATGCACCAGTCATCTCAGCCG 940
Query 971 CAAAAGCTTACCATGAACAGTTATCAGTCCCTGAGATCACCAATGCCGTGTTTGAGCCAG 1030
| || |||||||| || ||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 941 CCAAGGCTTACCACGAGCAGCTATCAGTCCCTGAGATCACCAATGCCGTTTTTGAGCCAG 1000
Query 1031 CTAGCATGATGGCAAAGTGTGACCCGAGGCACGGAAAGTACATGGCATGTTGTTTGATGT 1090
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1001 CTAGCATGATGGCAAAGTGTGACCCGAGACACGGAAAGTACATGGCCTGTTGTTTGATGT 1060
Query 1091 ACCGTGGAGATGTTGTTCCCAAAGATGTTAATGCTGCTGTTGGCACCATCAAGACAAAGA 1150
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 ACCGAGGAGATGTTGTTCCCAAAGATGTTAATGCTGCTGTTGGCACCATCAAGACAAAGA 1120
Query 1151 GGACTGTACAGTTTGTTGACTGGTGCCCGACTGGGTTCAAATGTGGAATCAACTACCAAC 1210
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1121 GGACTGTTCAGTTTGTTGACTGGTGCCCAACTGGGTTCAAATGTGGAATCAACTACCAAC 1180
Query 1211 CTCCAACAGTCGTTCCAGGAGGCGACCTTGCTAAAGTCCAGAGAGCTGTGTGCATGATCA 1270
|||||||||| |||||||| || ||||| ||||| || ||||||||||| || |||||||
Sbjct 1181 CTCCAACAGTTGTTCCAGGTGGTGACCTCGCTAAGGTTCAGAGAGCTGTATGTATGATCA 1240
Query 1271 GTAACAACACAGCAGTTGCGGAGGTGTTCTCACGGATCGACCACAAGTTTGATCTCATGT 1330
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 GTAACAACACAGCAGTTGCAGAGGTGTTCTCACGGATCGACCACAAGTTTGATCTCATGT 1300
Query 1331 ATGCGAAGAGGGCATTCGTACACTGGTACGTCGGTGAAGGAATGGAGGAAGGTGAATTCT 1390
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1301 ATGCGAAGAGGGCATTTGTCCACTGGTACGTTGGTGAAGGAATGGAGGAAGGTGAATTCT 1360
Query 1391 CCGAGGCACGTGAAGACTTGGCCGCACTGGAGAAAGATTACGAAGAAGTTGGTGCCGAAG 1450
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1361 CTGAGGCACGTGAAGACTTGGCCGCACTGGAGAAAGATTACGAAGAAGTTGGTGCTGAAG 1420
Query 1451 GTGGAGATGATGAAGAAGATGAAGGTGAAGACTACTGACACCTTTTCTCaaaaaaaaaaa 1510
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1421 GTGGAGACGATGAAGAAGATGAAGGTGAAGACTATTGACACCTTTTCTCAAAAAAA---- 1476
Query 1511 aaaCTGCAACCAAAAA--GTTTTTTCGTTGATCTGTTATCACTTTTGATTCTTGTTGATT 1568
||||||||||||| ||||||||||| ||||||| |||||||||||||| |||||||
Sbjct 1477 ---CTGCAACCAAAAAAAGTTTTTTCGTTTATCTGTTTTCACTTTTGATTCT-GTTGATT 1532
Query 1569 GTTTTAATCCTGTACAATATTCGTTCGGCCTTCGTGTTTTATCTCGGTTGGATACATTTT 1628
|||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1533 GTTTAAATCCTGTAAAATATTCGTTCGGTCTTCGTGTTTTATCTCGGTTGGATACATTTT 1592
Query 1629 CATTGGTAGAG------T--C-----CC-GAGTTCATTATCAAGCTTTTGTTGTACCAAA 1674
||||||||||| | | || |||||||||||||||||||||||||||||||
Sbjct 1593 CATTGGTAGAGCGACCATTGCGAGTTCCCGAGTTCATTATCAAGCTTTTGTTGTACCAAA 1652
Query 1675 CCTTT-ATTATCTTCTTACA 1693
| ||| || |||||||||||
Sbjct 1653 C-TTTGATAATCTTCTTACA 1671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83684308515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5