BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488873
Length=1667
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19780.1 | Symbols: TUA5 | tubulin alpha-5 | chr5:6687074-66... 2608 0.0
AT5G19770.1 | Symbols: TUA3 | tubulin alpha-3 | chr5:6682493-66... 2494 0.0
AT1G64740.1 | Symbols: TUA1 | alpha-1 tubulin | chr1:24050006-2... 1013 0.0
> AT5G19780.1 | Symbols: TUA5 | tubulin alpha-5 | chr5:6687074-6689171
FORWARD LENGTH=1736
Length=1736
Score = 2608 bits (1412), Expect = 0.0
Identities = 1562/1634 (96%), Gaps = 11/1634 (1%)
Strand=Plus/Plus
Query 35 CTC-AATTAGGGTTCCTACTGAGAGAAGATGCGAGAAATCATAAGCATTCATATCGGACA 93
||| |||||||||| || ||||||||||||| | ||||| || |||||||||||||||||
Sbjct 111 CTCGAATTAGGGTTTCTGCTGAGAGAAGATGAGGGAAATTATTAGCATTCATATCGGACA 170
Query 94 AGCTGGGATCCAGGTCGGGAATTCGTGCTGGGAGCTTTACTGTCTCGAACATGGAATCCA 153
||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 171 AGCCGGGATCCAAGTCGGAAATTCCTGCTGGGAGCTTTACTGTCTCGAACATGGAATCCA 230
Query 154 GCCCGACGGAATGATGCCGAGTGATACTACAGTTGGTGTTGCGCACGATGCGTTCAACAC 213
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 231 GCCCGACGGAATGATGCCGAGTGATACTACAGTTGGTGTTGCACACGATGCGTTCAATAC 290
Query 214 CTTCTTTAGCGAGACTGGTGCTGGGAAGCATGTCCCTAGGGCTGTCTTCGTTGATCTTGA 273
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 291 TTTCTTTAGCGAGACTGGAGCTGGGAAGCATGTTCCTAGGGCTGTCTTCGTTGATCTCGA 350
Query 274 GCCTACTGTTATCGACGAAGTTCGTACTGGTACTTACCGTCAGCTTTTCCATCCTGAGCA 333
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 351 GCCTACCGTTATCGACGAAGTTCGTACTGGTACTTACCGTCAACTTTTCCATCCAGAGCA 410
Query 334 GCTCATTTCCGGGAAAGAAGATGCTGCTAACAACTTCGCTAGAGGACATTACACTGTTGG 393
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GCTCATTTCTGGGAAAGAAGATGCTGCTAACAACTTCGCTAGAGGACATTACACTGTTGG 470
Query 394 AAAGGAAATTGTGGATCTATGCCTTGACCGTGTGAGGAAACTTGCCGACAACTGTACTGG 453
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 471 AAAGGAAATTGTGGATCTATGTCTTGACCGTGTGAGGAAGCTTGCCGACAACTGTACTGG 530
Query 454 CTTACAAGGGTTTTTGGTGTTCAATGCTGTTGGTGGTGGAACTGGTTCTGGATTGGGTTC 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 CTTACAAGGGTTTTTGGTGTTCAATGCTGTTGGTGGTGGAACTGGTTCTGGATTGGGTTC 590
Query 514 TCTGTTGTTAGAACGTTTGTCTGTAGATTACGGAAAGAAGTCTAAGCTTGGTTTCACCAT 573
||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 591 TCTGTTGCTAGAGCGTTTGTCTGTAGATTACGGAAAGAAGTCTAAGCTTGGTTTTACCAT 650
Query 574 TTACCCTTCTCCTCAGGTTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTTCTCTCAAC 633
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 651 ATACCCTTCTCCTCAGGTTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTGCTTTCAAC 710
Query 634 GCATTCCCTTCTTGAACACACCGATGTAGCTGTCCTCTTGGATAACGAAGCCATCTATGA 693
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 711 GCATTCCCTTCTTGAACATACCGATGTAGCTGTCCTCTTGGATAACGAAGCCATCTATGA 770
Query 694 CATTTGCCGCAGATCCCTAGATATCGAGAGGCCAACCTACACAAACTTGAACAGGTTGAT 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 CATTTGCCGCAGATCCCTAGATATCGAGAGGCCAACCTACACAAACTTGAACAGGTTGAT 830
Query 754 ATCACAGATCATTTCATCCTTGACAACATCGTTGAGGTTTGATGGAGCCATCAATGTGGA 813
|||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 831 ATCACAGATCATTTCATCCTTGACAACATCTTTGAGGTTTGATGGTGCCATCAACGTGGA 890
Query 814 TATCACTGAGTTCCAGACCAATCTTGTCCCATATCCCCGTATCCATTTCATGCTCTCATC 873
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 891 TATCACTGAGTTCCAGACCAATCTTGTCCCATATCCCCGTATCCATTTCATGCTGTCATC 950
Query 874 TTATGCACCAGTCATCTCAGCCGCCAAGGCTTACCATGAACAGTTATCAGTCCCTGAGAT 933
|||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||
Sbjct 951 TTATGCACCAGTCATCTCAGCCGCCAAGGCTTACCACGAGCAGCTATCAGTCCCTGAGAT 1010
Query 934 CACCAATGCCGTGTTTGAGCCAGCTAGCATGATGGCAAAGTGTGACCCGAGGCACGGAAA 993
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1011 CACCAATGCCGTGTTTGAGCCAGCGAGCATGATGGCAAAGTGTGACCCAAGGCACGGAAA 1070
Query 994 GTACATGGCATGTTGTTTGATGTACCGTGGAGATGTCGTTCCCAAAGATGTTAATGCTGC 1053
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1071 GTACATGGCATGTTGTTTGATGTACCGAGGAGATGTTGTTCCCAAAGATGTTAATGCTGC 1130
Query 1054 TGTTGGCACCATCAAGACAAAGAGGACTGTTCAGTTTGTTGACTGGTGCCCAACTGGGTT 1113
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 CGTTGGCACCATCAAGACAAAGAGGACTGTTCAGTTTGTTGACTGGTGCCCAACTGGGTT 1190
Query 1114 CAAATGTGGAATCAACTACCAACCTCCAACAGTTGTTCCAGGTGGTGACCTCGCTAAGGT 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 CAAATGTGGAATCAACTACCAACCTCCAACAGTTGTTCCAGGTGGTGACCTCGCTAAGGT 1250
Query 1174 TCAGAGAGCTGTGTGCATGATCAGTAACAACACAGCAGTTGCGGAGGTGTTCTCACGGAT 1233
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1251 TCAGAGAGCTGTATGCATGATCAGTAACAACACAGCAGTTGCAGAGGTGTTCTCACGGAT 1310
Query 1234 CGACCACAAGTTTGATCTTATGTATGCAAAGAGGGCATTTGTGCACTGGTACGTTGGTGA 1293
|||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1311 CGACCACAAGTTTGATCTCATGTATGCGAAGAGGGCATTCGTGCACTGGTACGTTGGTGA 1370
Query 1294 GGGAATGGAGGAAGGTGAATTCTCTGAGGCACGTGAAGACTTGGCCGCACTGGAGAAAGA 1353
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 AGGAATGGAGGAAGGTGAATTCTCTGAGGCACGTGAAGACTTGGCCGCACTGGAGAAAGA 1430
Query 1354 TTACGAAGAAGTGGGTGCTGAAGGTGGTGACGATGAAGAAGATGAAGGTGAAGACTATTG 1413
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1431 CTACGAAGAAGTTGGTGCTGAAGGTGGAGACGATGAAGAAGATGAAGGTGAAGACTATTG 1490
Query 1414 ACACCTTTTCTCAAGCAATGAGCAACCAAAAAGTTTTTTCGTTTATCTGTTTTCATTTTA 1473
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
Sbjct 1491 ACACCTTTTCTCAAGCAATGTGCTACCAAAAAGTTTTTTCGTTTATCTGTTTTCATTA-A 1549
Query 1474 TGATTCTTGTTGATTACATGTTTGTTTTAATCCTGTACAATATCCATTGGACTTCTTCCG 1533
||||||||||||||||||||||||||||||||||||||||||| | | | | || ||
Sbjct 1550 TGATTCTTGTTGATTACATGTTTGTTTTAATCCTGTACAATATTC---G-A-TCCT-CC- 1602
Query 1534 CCTTAATGTTTTATCTCGGTTAGATACATTTTCATTGGTAGAGCGACCATTGGGGAAGAT 1593
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 --TTCGTGTTTCATCTCGGTTAGATACATTTTCATTGGTAGAGCGACCATTGGGGAAGAT 1660
Query 1594 CCCGAGTTCATTATCAAGCTTTTGTTGTACCAAACCTTCATTATCTTCTTACAGTGTCCA 1653
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1661 CCCGAGTTCATTATCAAGCTTTTGTTGTACGAAACCTTCATTATCTTCTTACATTGTCCA 1720
Query 1654 TTTTCTATAGGTAC 1667
|||||| |||||||
Sbjct 1721 TTTTCTTTAGGTAC 1734
> AT5G19770.1 | Symbols: TUA3 | tubulin alpha-3 | chr5:6682493-6684579
REVERSE LENGTH=1726
Length=1726
Score = 2494 bits (1350), Expect = 0.0
Identities = 1537/1624 (95%), Gaps = 26/1624 (2%)
Strand=Plus/Plus
Query 38 AATTAGGGTTCCTACTGAGAGAAGATGCGAGAAATCATAAGCATTCATATCGGACAAGCT 97
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 82 AATTAGGGTTTCTACTGAGAGAAGATGCGAGAAATCATAAGCATTCACATCGGACAAGCT 141
Query 98 GGGATCCAGGTCGGGAATTCGTGCTGGGAGCTTTACTGTCTCGAACATGGAATCCAGCCC 157
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 142 GGGATCCAGGTCGGAAATTCGTGTTGGGAGCTTTACTGTCTCGAACATGGAATCCAGCCG 201
Query 158 GACGGAATGATGCCGAGTGATACTACAGTTGGTGTTGCGCACGATGCGTTCAACACCTTC 217
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 202 GACGGAATGATGCCGAGTGATACTACAGTTGGTGTTGCACACGATGCGTTCAATACTTTC 261
Query 218 TTTAGCGAGACTGGTGCTGGGAAGCATGTCCCTAGGGCTGTCTTCGTTGATCTTGAGCCT 277
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 262 TTTAGCGAGACTGGTGCTGGGAAGCATGTCCCTAGGGCTGTCTTCGTTGATCTCGAGCCT 321
Query 278 ACTGTTATCGACGAAGTTCGTACTGGTACTTACCGTCAGCTTTTCCATCCTGAGCAGCTC 337
|| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 322 ACCGTTATCGACGAAGTTCGTACTGGTACTTACCGTCAACTTTTCCATCCAGAGCAGCTC 381
Query 338 ATTTCCGGGAAAGAAGATGCTGCTAACAACTTCGCTAGAGGACATTACACTGTTGGAAAG 397
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 382 ATTTCTGGGAAAGAAGATGCTGCTAACAACTTCGCTAGAGGACATTACACTGTTGGGAAG 441
Query 398 GAAATTGTGGATCTATGCCTTGACCGTGTGAGGAAACTTGCCGACAACTGTACTGGCTTA 457
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 GAAATTGTGGATCTATGTCTTGACCGTGTGAGGAAACTTGCCGACAACTGTACTGGCTTA 501
Query 458 CAAGGGTTTTTGGTGTTCAATGCTGTTGGTGGTGGAACTGGTTCTGGATTGGGTTCTCTG 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 CAAGGGTTTTTGGTGTTCAATGCTGTTGGTGGTGGAACTGGTTCTGGATTGGGTTCTCTG 561
Query 518 TTGTTAGAACGTTTGTCTGTAGATTACGGAAAGAAGTCTAAGCTTGGTTTCACCATTTAC 577
||| |||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 562 TTGCTAGAGCGTTTGTCTGTAGATTATGGAAAGAAGTCTAAGCTTGGTTTTACCATATAC 621
Query 578 CCTTCTCCTCAGGTTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTTCTCTCAACGCAT 637
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 622 CCTTCTCCTCAGGTTTCTACTGCTGTTGTAGAACCTTACAACAGTGTTCTCTCAACGCAT 681
Query 638 TCCCTTCTTGAACACACCGATGTAGCTGTCCTCTTGGATAACGAAGCCATCTATGACATT 697
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 TCCCTTCTTGAACATACGGATGTAGCTGTCCTCTTGGATAACGAAGCCATCTATGACATT 741
Query 698 TGCCGCAGATCCCTAGATATCGAGAGGCCAACCTACACAAACTTGAACAGGTTGATATCA 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 TGCCGCAGATCCCTAGATATCGAGAGGCCAACCTACACAAACTTGAACAGGTTGATATCA 801
Query 758 CAGATCATTTCATCCTTGACAACATCGTTGAGGTTTGATGGAGCCATCAATGTGGATATC 817
|||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 802 CAGATCATTTCATCCTTGACAACATCTTTGAGGTTTGATGGTGCCATCAACGTGGATATC 861
Query 818 ACTGAGTTCCAGACCAATCTTGTCCCATATCCCCGTATCCATTTCATGCTCTCATCTTAT 877
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 862 ACTGAGTTCCAGACCAATCTTGTCCCATATCCCCGTATCCATTTCATGCTGTCATCTTAT 921
Query 878 GCACCAGTCATCTCAGCCGCCAAGGCTTACCATGAACAGTTATCAGTCCCTGAGATCACC 937
|||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct 922 GCACCAGTCATCTCAGCCGCCAAGGCTTACCACGAGCAGCTATCAGTCCCTGAGATCACC 981
Query 938 AATGCCGTGTTTGAGCCAGCTAGCATGATGGCAAAGTGTGACCCGAGGCACGGAAAGTAC 997
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 982 AATGCCGTTTTTGAGCCAGCTAGCATGATGGCAAAGTGTGACCCGAGACACGGAAAGTAC 1041
Query 998 ATGGCATGTTGTTTGATGTACCGTGGAGATGTCGTTCCCAAAGATGTTAATGCTGCTGTT 1057
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1042 ATGGCCTGTTGTTTGATGTACCGAGGAGATGTTGTTCCCAAAGATGTTAATGCTGCTGTT 1101
Query 1058 GGCACCATCAAGACAAAGAGGACTGTTCAGTTTGTTGACTGGTGCCCAACTGGGTTCAAA 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 GGCACCATCAAGACAAAGAGGACTGTTCAGTTTGTTGACTGGTGCCCAACTGGGTTCAAA 1161
Query 1118 TGTGGAATCAACTACCAACCTCCAACAGTTGTTCCAGGTGGTGACCTCGCTAAGGTTCAG 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 TGTGGAATCAACTACCAACCTCCAACAGTTGTTCCAGGTGGTGACCTCGCTAAGGTTCAG 1221
Query 1178 AGAGCTGTGTGCATGATCAGTAACAACACAGCAGTTGCGGAGGTGTTCTCACGGATCGAC 1237
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1222 AGAGCTGTATGTATGATCAGTAACAACACAGCAGTTGCAGAGGTGTTCTCACGGATCGAC 1281
Query 1238 CACAAGTTTGATCTTATGTATGCAAAGAGGGCATTTGTGCACTGGTACGTTGGTGAGGGA 1297
|||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 1282 CACAAGTTTGATCTCATGTATGCGAAGAGGGCATTTGTCCACTGGTACGTTGGTGAAGGA 1341
Query 1298 ATGGAGGAAGGTGAATTCTCTGAGGCACGTGAAGACTTGGCCGCACTGGAGAAAGATTAC 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 ATGGAGGAAGGTGAATTCTCTGAGGCACGTGAAGACTTGGCCGCACTGGAGAAAGATTAC 1401
Query 1358 GAAGAAGTGGGTGCTGAAGGTGGTGACGATGAAGAAGATGAAGGTGAAGACTATTGACAC 1417
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1402 GAAGAAGTTGGTGCTGAAGGTGGAGACGATGAAGAAGATGAAGGTGAAGACTATTGACAC 1461
Query 1418 CTTTTCTCAAGCAATGAGCAACCAAAAA--GTTTTTTCGTTTATCTGTTTTCATTTTATG 1475
|||||||||| || ||||||||||| ||||||||||||||||||||||| ||| ||
Sbjct 1462 CTTTTCTCAAAAAAACTGCAACCAAAAAAAGTTTTTTCGTTTATCTGTTTTCACTTT-TG 1520
Query 1476 ATTCTTGTTGATTACATGTTTGTTTTAATCCTGTACAATATCCATT-GGACTTCTTCCGC 1534
||||| ||||||| |||| ||||||||| ||||| | || || | |||| |
Sbjct 1521 ATTCT-GTTGATT----GTTTA----AATCCTGTAAAATATTCGTTCGG--T-CTTC-G- 1566
Query 1535 CTTAATGTTTTATCTCGGTTAGATACATTTTCATTGGTAGAGCGACCATTGGGGAAGATC 1594
| |||||||||||||| |||||||||||||||||||||||||||||| | | | ||
Sbjct 1567 -T----GTTTTATCTCGGTTGGATACATTTTCATTGGTAGAGCGACCATTGCG-A-GTTC 1619
Query 1595 CCGAGTTCATTATCAAGCTTTTGTTGTACCAAACCTTCATTATCTTCTTACAG-TGTCCA 1653
|||||||||||||||||||||||||||||||||| || || ||||||||||| ||||||
Sbjct 1620 CCGAGTTCATTATCAAGCTTTTGTTGTACCAAACTTTGATAATCTTCTTACAACTGTCCA 1679
Query 1654 TTTT 1657
||||
Sbjct 1680 TTTT 1683
Score = 71.3 bits (38), Expect = 3e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 1 AAATAAAGAAGATCTCGCTCACCGCTCTCATTTCCTCAATT 41
||| |||||||||||||||||||||||||||||||||||||
Sbjct 11 AAAAAAAGAAGATCTCGCTCACCGCTCTCATTTCCTCAATT 51
> AT1G64740.1 | Symbols: TUA1 | alpha-1 tubulin | chr1:24050006-24052487
FORWARD LENGTH=1652
Length=1652
Score = 1013 bits (548), Expect = 0.0
Identities = 1104/1373 (80%), Gaps = 36/1373 (3%)
Strand=Plus/Plus
Query 58 GAAGATGCGAGAAATCATAAGCATTCATATCGGACAAGCTGGGATCCAGGTCGGGAATTC 117
||| ||| | || ||||| ||||||||||||||||||||||| || |||||||| |||||
Sbjct 105 GAACATGAGGGAGATCATTAGCATTCATATCGGACAAGCTGGTATTCAGGTCGGAAATTC 164
Query 118 GTGCTGGGAGCTTTACTGTCTCGAACATGGAATCCAGCCCGACGGAATGATGCCGAGTGA 177
|| ||||||||||| |||||||||||||| ||||| ||||| || | ||||| |||||
Sbjct 165 TTGTTGGGAGCTTTATTGTCTCGAACATGGTATCCAACCCGATGGCACCATGCCCAGTGA 224
Query 178 TACTACAGTTGGTG-TTGCGCACGATGCGTTCAACACCTTCTTTAGCGAGAC-TGGTGCT 235
|| ||| ||||||| || || ||||| |||||||| |||||||||||||| | | |
Sbjct 225 TAGTACTGTTGGTGCATG-TCATGATGCATTCAACACATTCTTTAGCGAGACAAGCT-CA 282
Query 236 GG-GAAGCATGTCCCTAGGGCTGT-CTTCGTTGATCTTGAGCCTACTGTTATCGACGAAG 293
|| || ||||| ||| | ||||| ||| ||||||| || || || || || |||||||
Sbjct 283 GGCCAA-CATGTGCCTCGAGCTGTGTTTC-TTGATCTCGAACCAACCGTCATTGACGAAG 340
Query 294 TTCGTACTGGTACTTACCGTCAGCTTTTCCATCCTGAGCAGCTCATTTCCGGGAAAGAAG 353
| | || || |||||| | |||||||||||||| ||||| || || || || |||||||
Sbjct 341 TAAGAACCGGCACTTACAGACAGCTTTTCCATCCCGAGCAACTTATCTCTGGCAAAGAAG 400
Query 354 ATGCTGCTAACAACTTCGCTAGAGGACATTACACTGTTGGAAAGGAAATTGTGGATCTA- 412
|||| || || ||||| |||||||| |||||||||||||||| ||||||||| || | |
Sbjct 401 ATGCAGCCAATAACTTTGCTAGAGGCCATTACACTGTTGGAAGGGAAATTGTTGA-C-AC 458
Query 413 -TGCCTTGACCGTG-TGAGGAAACTT-GCCGACAACTGTACTGGCTTACAAGGGTTTTTG 469
|||||||| | | |||||||| || || ||||| || || || |||||||| ||||||
Sbjct 459 CTGCCTTGAAAG-GCTGAGGAAA-TTGGCAGACAATTGCACAGGGTTACAAGGATTTTTG 516
Query 470 GTGTTCAATGCTGTTGGTGGTGGAACTGGTTCTGGATTGGGTTCTCTGTTGTTAGAACGT 529
|| |||||||||||||| |||||||| |||||||| ||||||||| | |||| || ||
Sbjct 517 GTATTCAATGCTGTTGGGGGTGGAACAGGTTCTGGTTTGGGTTCTTTACTGTTGGAGCGC 576
Query 530 TTGTCTGTAGATTACGGAAAGAAGTCTAAGCTTGGTTTCACCATTTACCCTTCTCCTCAG 589
||||| ||||||| ||||| || || || || ||||||||||| |||||||||||||||
Sbjct 577 TTGTCCGTAGATTTTGGAAAAAAATCAAAACTCGGTTTCACCATCTACCCTTCTCCTCAG 636
Query 590 GTTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTTCTCTCAACGCATTCCCTTCTTGAA 649
|||||||| || ||||| ||||| || |||||||||||||| || ||||| ||||| |||
Sbjct 637 GTTTCTACAGCAGTTGTGGAGCCGTATAACAGTGTTCTCTCGACTCATTCTCTTCTCGAA 696
Query 650 CACACCGATGTAGCTGTCCTCTTGGATAACGAAGCCATCTATGACATTTGCCGCAGATCC 709
||||| ||||| | ||| || ||||| || |||||||| || || || ||| | |||||
Sbjct 697 CACACAGATGTTGTTGTTCTTTTGGACAATGAAGCCATATACGATATCTGCAGGAGATCT 756
Query 710 CTAGATATCGAGAGGCCAACCTACACAAACTTGAACAGGTTGATATCACAGATCATTTCA 769
|||| || |||||||| || ||| | || |||||| | ||||| || || | ||| ||
Sbjct 757 TTAGACATTGAGAGGCCTACATACTCCAATTTGAACCGCTTGATCTCCCAAACCATCTCT 816
Query 770 TC-CTTGACAACATCGT-TGAGGTTTGATGGAGCCATCAATGTGGATATCACTGAGTTCC 827
|| ||| ||||| || | | || ||||| || |||||||||||||| ||||| |||||||
Sbjct 817 TCGCTT-ACAACTTC-TCTAAGATTTGACGGTGCCATCAATGTGGACATCACCGAGTTCC 874
Query 828 AGACCAATCTTGTCCCATATCCC-CGTATCCATTTCATGCTCTCATCTTATGCACCAGTC 886
||||||| ||||| || || ||| || ||||| ||||||||||| ||||||||||| ||
Sbjct 875 AGACCAACCTTGTACCTTA-CCCTCGGATCCACTTCATGCTCTCCTCTTATGCACCTGTG 933
Query 887 ATCTCAGCCGCCAAGGCTTACCATGAACAGTTATCAGTCCCTGAGATCACCAATGCCGTG 946
|| ||| | || ||||| |||||||| ||||| || |||||||||||||| | | ||||
Sbjct 934 ATTTCATCTGCAAAGGCCTACCATGAGCAGTTTTCGGTCCCTGAGATCACGACTTCCGTC 993
Query 947 TTTGAGCCAGCTAGCATGATGGC-AAAGTGTGACCCGAGGCACGGAAAGTACATGGCATG 1005
||||| || | | |||||||| ||| |||||||| ||||| || ||||||||||| ||
Sbjct 994 TTTGAACCCTCCAATATGATGGCTAAA-TGTGACCCTAGGCATGGCAAGTACATGGCTTG 1052
Query 1006 TTGTTTGATGTACCGTGGAGATGTCGTTCCCAAAGATGTTAATGCTGCTGTTGGC-ACCA 1064
||||||||||| ||||| || || || ||||| ||||| ||| | || ||| || |||
Sbjct 1053 CTGTTTGATGTATCGTGGTGACGTTGTGCCCAAGGATGTCAATACAGCCGTT-GCTGCCA 1111
Query 1065 TC-AAGACAAAGAGGACTGTTCAGTTTGTTGACTGGTGCCCAACTGGGTTCAAATGTGGA 1123
|| ||| |||| | || |||||||||||||||||||||||||||| ||||| || ||
Sbjct 1112 TCAAAGCCAAA-CGAACAATTCAGTTTGTTGACTGGTGCCCAACTGGATTCAAGTGCGGG 1170
Query 1124 ATCAACTACCAACCTCCAACAGTTGTTCCAGGTGGTGACCTCGCTAAGGTTCAGA-GAGC 1182
|| |||||||| || || | |||||||||||||||||||| ||||||||||| | ||||
Sbjct 1171 ATAAACTACCAGCCGCCTTCCGTTGTTCCAGGTGGTGACCTGGCTAAGGTTCA-ACGAGC 1229
Query 1183 TGTGTGCATGATCAGTAACAACACAGCAGTTGCGGAGGTGTTCTCACGGATCGACCACAA 1242
|| ||||||||||| || || || |||||||| || ||||||||||| || ||||| ||
Sbjct 1230 GGTTTGCATGATCAGCAATAATACTGCAGTTGCTGAAGTGTTCTCACGTATAGACCATAA 1289
Query 1243 GTTTGATCTTATGTA-TGCAAAGAGGGCATTTGTGCACTGGTACGTTGGTGAGGGAATGG 1301
||||||||| ||||| | |||| || || ||||| || ||||| || || ||||| ||||
Sbjct 1290 GTTTGATCTCATGTACTCCAAA-AGAGCCTTTGTCCATTGGTATGTAGGAGAGGGTATGG 1348
Query 1302 AGGAAGGTGAATTCTCTGAGGCACGTGAAGA-CTTGGCCGCACTGGAGAAAGATTACGAA 1360
| ||||| || ||||||||||| ||||| || |||| | || || ||||||||||| ||
Sbjct 1349 AAGAAGGAGAGTTCTCTGAGGCTCGTGAGGATCTTG-CTGCCCTCGAGAAAGATTATGAG 1407
Query 1361 GAAGTGGGTGCTGAAGGTG-GTGACGATGAAGAAGATGAAGGTGAAGACTATT 1412
||||| |||| ||||| | | || || || || || ||||| || || ||||
Sbjct 1408 GAAGTTGGTGGAGAAGGAGCG-GAGGACGACGACGAAGAAGGCGATGAGTATT 1459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82379094345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5