BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488876
Length=685
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19810.1 | Symbols: | Proline-rich extensin-like family pro... 754 0.0
AT5G19800.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 226 2e-58
AT3G20850.1 | Symbols: | proline-rich family protein | chr3:73... 84.2 1e-15
> AT5G19810.1 | Symbols: | Proline-rich extensin-like family protein
| chr5:6693052-6693801 FORWARD LENGTH=750
Length=750
Score = 754 bits (408), Expect = 0.0
Identities = 512/562 (91%), Gaps = 7/562 (1%)
Strand=Plus/Plus
Query 129 TCCACCTCCCGTTAATCTTTCTCCTCCTCCACCCCAGGTTAAtctttctcctcctccacc 188
|||||| || ||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 189 TCCACCACCGGTTAATCTTTCTCCTCCTCCACCCCCGGTTAATCTATCTCCTCCTCCACC 248
Query 189 cccggttattctttctcctcctccacctccggttcctctttctcctcctccacccccggt 248
|||||||| ||||||||||||||| || ||||||| ||||||||||||||| ||||||||
Sbjct 249 CCCGGTTAATCTTTCTCCTCCTCCGCCCCCGGTTCTTCTTTCTCCTCCTCCGCCCCCGGT 308
Query 249 tattctttctcctcctccacctccggttcctctttctcctcctccacccccggttattct 308
|| |||||||||||||||||| |||||| |||||||||||||||||| |||||| ||||
Sbjct 309 TAATCTTTCTCCTCCTCCACCCCCGGTTAATCTTTCTCCTCCTCCACCACCGGTTCTTCT 368
Query 309 ttctcctcctccacccccggttcctctttctcctcctccacccccgattcctctttctcc 368
|||||||||||| |||||||||| ||||||||||||||| |||||| || ||| |||||
Sbjct 369 TTCTCCTCCTCCGCCCCCGGTTCTTCTTTCTCCTCCTCCGCCCCCGGTTAATCTATCTCC 428
Query 369 tcctccacccccggttcttctttctcctcctccacccccggttcctctttctcctcctcc 428
|||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 429 TCCTCCACCCCCGGTTCTTCTTTCTCCTCCTCCACCTCCGGTTCTTTTTTCTCCTCCTCC 488
Query 429 accc-ctggttcctcgttctcctcctccacccccggttactcgttcccctcctcctcctc 487
|||| | | || ||||| |||||||||||||| | |||||||||| |||||||||||||
Sbjct 489 ACCCACAG-TTACTCGTCCTCCTCCTCCACCCACAATTACTCGTTCTCCTCCTCCTCCTC 547
Query 488 gacctcAAGCCGCTGCTTACTACAAGAGAACTCCACCACCACCACCTTCTAAATATGGAA 547
||||||||||||||||||||||||||| ||||||||| |||||||| | |||||||||||
Sbjct 548 GACCTCAAGCCGCTGCTTACTACAAGAAAACTCCACCGCCACCACCCTATAAATATGGAA 607
Query 548 GAGTTTATCCACCTCCTCCTCCTCGACCTCAAGCCGCT-GCTTACTACAAGAGAACTCCA 606
|||| |||||||| |||||||||| ||||||||||||| | || |||||||||| |||||
Sbjct 608 GAGTGTATCCACCACCTCCTCCTCCACCTCAAGCCGCTCG-TTCCTACAAGAGATCTCCA 666
Query 607 CCGCC---ACCACCCTCTAAATATGGAAGAGTGTATCCACCACCTCCTGCCGGAAAATCA 663
||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 667 CCGCCGCCACCACCCTCTAAATATGGAAGAGTGTATTCACCACCTCCTCCCGGAAAATCA 726
Query 664 TGGTTGTGGTTCTTGAAGCTCT 685
||||||||||||||||||||||
Sbjct 727 TGGTTGTGGTTCTTGAAGCTCT 748
Score = 588 bits (318), Expect = 3e-167
Identities = 554/661 (84%), Gaps = 44/661 (7%)
Strand=Plus/Plus
Query 1 ATGGTGTCCCAAAGGTTTTCCTTGACCCTACTTTTTCTCTTGGCAATCTTAATCACAGTT 60
|||||||||| |||||||||| ||| |||||| ||||||||||||| |||||||||||||
Sbjct 1 ATGGTGTCCCGAAGGTTTTCCCTGATCCTACTATTTCTCTTGGCAACCTTAATCACAGTT 60
Query 61 GCTAATGGAAACAACAACAGAAAGCTATTGACATCT--TACA-AA-TATTCTCCTCCT-- 114
|||||||||||||||||||||||||||||||| ||| | || || | | || |||
Sbjct 61 GCTAATGGAAACAACAACAGAAAGCTATTGACTTCTGCTCCAGAACCA-GCACC-CCTGG 118
Query 115 CCGCCCCCGGT-CT-ATCCACCTCCC-GTTAATCTTTCTCCTCCTCCACCCCAGGTTAAt 171
| | | || |||||| ||| |||||| | ||| |||||||||||| |||||||
Sbjct 119 TTGATCTATCTCCTCCTCCACC-CCCGGTTAATATATCTTCTCCTCCACCCCCGGTTAAT 177
Query 172 ctttctcctcctccacccccggttattctttctcctcctccacctccggttcctctttct 231
|| |||||||||||||| ||||||| |||||||||||||||||| |||||| ||| |||
Sbjct 178 CTATCTCCTCCTCCACCACCGGTTAATCTTTCTCCTCCTCCACCCCCGGTTAATCTATCT 237
Query 232 cctcctccacccccggttattctttctcctcctccacctccggttcctctttctcctcct 291
||||||||||||||||||| ||||||||||||||| || ||||||| |||||||||||||
Sbjct 238 CCTCCTCCACCCCCGGTTAATCTTTCTCCTCCTCCGCCCCCGGTTCTTCTTTCTCCTCCT 297
Query 292 ccacccccggttattctttctcctcctccacccccggttcctctttctcctcctccaccc 351
|| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 298 CCGCCCCCGGTTAATCTTTCTCCTCCTCCACCCCCGGTTAATCTTTCTCCTCCTCCACCA 357
Query 352 ccgattcctctttctcctcctccacccccggttcttctttctcctcctccacccccggtt 411
||| ||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 358 CCGGTTCTTCTTTCTCCTCCTCCGCCCCCGGTTCTTCTTTCTCCTCCTCCGCCCCCGGTT 417
Query 412 cctctttctcctcctccacccctggttcctcgttctcctcctccacccccggttactcgt 471
||| |||||||||||||||| ||||| || ||||||||||||||| |||||| || |
Sbjct 418 AATCTATCTCCTCCTCCACCCCCGGTTCTTCTTTCTCCTCCTCCACCTCCGGTT-CT--T 474
Query 472 tcccctcctcctcctcgacctcAAGCCGCTGCTTACTACAAGAGAACTCCACCACCACCA 531
| | ||||||||| ||| | | | | ||||| | | ||| || || |||
Sbjct 475 T---TTTCTCCTCCTCCACC-C-A----CAG-TTACT-C----G---TCCTCCTCCTCCA 516
Query 532 CCTTCTA-AATATGGAAGAGTTTATCCACCTCCTCCTCCTCGACCTCAAGCCGCTGCTTA 590
|| | | ||| | | | | | | ||||||||||||||||||||||||||||||||
Sbjct 517 CC--C-ACAAT-T--ACTCG--T-T-CTCCTCCTCCTCCTCGACCTCAAGCCGCTGCTTA 566
Query 591 CTACAAGAGAACTCCACCGCCACCACCCTCTAAATATGGAAGAGTGTATCCACCACCTCC 650
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 567 CTACAAGAAAACTCCACCGCCACCACCCTATAAATATGGAAGAGTGTATCCACCACCTCC 626
Query 651 T 651
|
Sbjct 627 T 627
> AT5G19800.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr5:6690648-6690938 FORWARD LENGTH=291
Length=291
Score = 226 bits (122), Expect = 2e-58
Identities = 146/158 (92%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 1 ATGGTGTCCCAAAGGTTTTCCTTGACCCTACTTTTTCTCTTGGCAATCTTAATCACAGTT 60
|||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1 ATGGTGTCGCAAAGGTTTTCCTTGACCCTAGTTTTTCTATTGGCAATCTTAATCACAGTT 60
Query 61 GCTAATGGAAACAACAACAGAAAGCTATTGACATCTTACAAATATTCTCCTCCTCCGCCC 120
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTAATGGAAACGACAACAGAAAGCTATTGACATCTTACAAATATTCTCCTCCTCCGCCA 120
Query 121 CCGGTCTATCCACCTCCCGTTAATCTTTCTCCTCCTCC 158
||||||||| ||||||| || || | ||||||||||
Sbjct 121 CCGGTCTATTCACCTCCAATTTCTCCTCCTCCTCCTCC 158
Score = 126 bits (68), Expect = 2e-28
Identities = 116/138 (84%), Gaps = 8/138 (6%)
Strand=Plus/Plus
Query 555 TCCACCTCCTCCTCCTCGACCTCAA--GC-CGCTGCTTACTACAAGAGA-A--CTCCACC 608
||| ||||||||||||| |||||| || |||||| |||||||||| | | || ||
Sbjct 153 TCCTCCTCCTCCTCCTCCTCCTCAATCGCATGCTGCTGCCTACAAGAGATATTCACCGCC 212
Query 609 GCCACCACCCTCTAAATATGGAAGAGTGTATCCACCACCTCCTGCCGGAAAATCATGGTT 668
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 213 GCCACCACCCTCTAAATATGGAAGAGTGTATCCACCACCTCCCCCCGGAAAATCATTGTG 272
Query 669 GTGGTTC-TTGAAGCTCT 685
|| |||| || || ||||
Sbjct 273 GTCGTTCCTT-AACCTCT 289
> AT3G20850.1 | Symbols: | proline-rich family protein | chr3:7304157-7304561
FORWARD LENGTH=405
Length=405
Score = 84.2 bits (45), Expect = 1e-15
Identities = 79/94 (84%), Gaps = 8/94 (9%)
Strand=Plus/Plus
Query 477 tcctcctcctcga-c--ctcAAGCCGCTGCTTACTACAAGAGAA-CTCCACCACCACCAC 532
||||||||||| | | ||||| | || | || |||| || || |||||||||||||||
Sbjct 288 TCCTCCTCCTCAAGCTTATCAAG-C-CTAC-TATTACAGGA-AATCTCCACCACCACCAC 343
Query 533 CTTCTAAATATGGAAGAGTTTATCCACCTCCTCC 566
||||||||||||||| ||| ||||||||||||||
Sbjct 344 CTTCTAAATATGGAAAAGTGTATCCACCTCCTCC 377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33154537020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5