BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488878
Length=1906
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19840.2 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1655 0.0
> AT5G19840.2 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr5:6705325-6709205
FORWARD LENGTH=1839
Length=1839
Score = 1655 bits (896), Expect = 0.0
Identities = 1085/1172 (93%), Gaps = 29/1172 (2%)
Strand=Plus/Plus
Query 1 ATGCCGATGGGATGCGAGTTTCCGAAGATTC-AAACCTTCGAGAATGCTCTTTCTGCCGC 59
||||||| ||||||||||||||||| || || |||||||||||||||||||| |||||||
Sbjct 48 ATGCCGACGGGATGCGAGTTTCCGATGA-TCAAAACCTTCGAGAATGCTCTTACTGCCGC 106
Query 60 CGACTTCGAGTCTACCGTCGAACTCACCAACTTCCCTGCAGTTTTTCGAGGATGTGCTAG 119
||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 107 CGACTTCGAGTCTACCGTCGAGCTCACCAACTTCCCAGCAGTTTTTCGGGGATGTGCTAG 166
Query 120 TGACTGGGATGCGTATTCTAAGTGGAATCCATTCAACAGTGGACTTGATTATCTAGAGGA 179
|| ||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 167 TGTCTGGGATGCGTATTCTAAGTGGAATCCATTCAACAGTGGCCTCGATTATCTGGAGGA 226
Query 180 ACGTGCAGGTTCAGTTGAAGTGGAGGCAATGCTTACAAAGACGGCTCCAATTTTCAACGG 239
|||||||||||||||||||||||||||||||||| | | |||||||||| ||||||| ||
Sbjct 227 ACGTGCAGGTTCAGTTGAAGTGGAGGCAATGCTTTCGAGGACGGCTCCAGTTTTCAATGG 286
Query 240 TGATATCAGAAGCCATGATAGGGTATCATTGCCGTTT-TCGGATTTTATCAGATTCTGCA 298
|||||||||||||||||| ||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 287 TGATATCAGAAGCCATGAGAGGGTGTCATTGCC-TTTCTCGGATTTTATCAGATTCTGCA 345
Query 299 AGCAGCATATGAGTGACAAAGGGAATGGTTCTGGTGTTGATGCTAAGTCTGCAGATTTAA 358
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 AGCAGCATATGAGAGGCAAAGGGAATGGTTCTGGTGTTGATGCTAAGTCTGCAGATTTAA 405
Query 359 CTCTTATGCCTGAGGACTATAGACCTGGACAAATATACCTAGCACAGTTTCCAATTCTGA 418
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 ATCCTATGTGTGAGGACTATAGACCTGGACAAATATACCTAGCACAGTTTCCAATTCTGA 465
Query 419 ATGACGAGAAAGAAGAGAAGGTTCAACTTAAGATTCTGAGGCAAGACATCCAGACGCCCA 478
|||| ||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||
Sbjct 466 ATGATGAGAAAGAAGAGAAGGTTCTACTTAAGATTCTGAGACAAGATATCCAGACGCCCA 525
Query 479 CACTTTTAGGGGAAAAGTCA-TTGTCTTCTATCAACTTTTGGATGAATTCTGCACACGCT 537
|| |||||| | ||||||| || |||||||||||||||||||||||||||||| | |||
Sbjct 526 CATTTTTAGACGCAAAGTCACTT-TCTTCTATCAACTTTTGGATGAATTCTGCAGAAGCT 584
Query 538 CGATCAAGTACCCACTATGATCCACATCATAACCTTTTATGCGTAGTTTCAGGGCGTAAA 597
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 585 CGATCAAGTACCCACTATGATCCACATCATAACCTTCTATGCGTAGTCTCAGGGCGTAAA 644
Query 598 AAAGTTGTCTTGTGGCCCCCTTCTGCAAGTCCCTCGCTCTACCCGATGCCTATATACGGA 657
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 645 AAAGTTGTATTGTGGCCCCCTTCCGCCAGTCCCTCGCTCTACCCGATGCCTATATACGGA 704
Query 658 GAAGCGTCAAACCATAGTTCGGTTGGTCTAGAAAATCCAAATTTATCAGATTATCCAAGA 717
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 GAAGCATCAAACCATAGTTCGGTTGGTCTAGAAAATCCAAATTTATCAGATTATCCAAGA 764
Query 718 GCAGAGCATTCCCTGAAGCAGTCACAGGAGGTTACTCTTAACGCTGGTGATGCAGTATTC 777
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 765 GCAGAGCATTCACTGAAGCAGTCACAGGAGATTACTCTTAACGCTGGTGATGCAGTATTC 824
Query 778 ATTCCTGAAGGTTGGTTCCATCAGGTGGATAGTGAAGAGCTGACTGTTGCTGTCAACTTT 837
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 825 ATTCCTGAAGGTTGGTTCCATCAGGTGGATAGTGATGAACTGACTGTTGCTGTCAACTTT 884
Query 838 TGGTGGCAATCAAAC-ATTATGTCTAACATGCATGAACACATGGATTCATATTATCTGCG 896
||||||||||||||| || ||||||||||||| ||||||||||||||| |||||||||||
Sbjct 885 TGGTGGCAATCAAACTAT-ATGTCTAACATGCCTGAACACATGGATTCGTATTATCTGCG 943
Query 897 ACGAATCACAAGAAGATTGATAGACAGAGAAATGAGCCTGTTAGTCTCGAAACCTTCTTC 956
|||||||||||||| | | ||||||||||||| ||||||||
Sbjct 944 TCGAATCACAAGAAG---------C-----------C-TGTTAGTCTCGAAGCCTTCTTC 982
Query 957 AACTGATTTAGGGCACCAGTCTGAGCATATTGACCAATCACACATTGAGATGGCAGAAGG 1016
|||||||||| |||||| ||||||||||||||||||||| | ||||||||||||||||||
Sbjct 983 AACTGATTTAAGGCACCTGTCTGAGCATATTGACCAATCTCGCATTGAGATGGCAGAAGG 1042
Query 1017 TGGGAATGATAATTTTGGCAATGAAAGCATTAAAACGGGCCTCAGCACATTGCATGAAAA 1076
||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1043 TGGGAATGATAATATAGGCAATGAAAGCATTAAAAAGGGCCTCAGCACATTGCATGAAAA 1102
Query 1077 AGCTTCGCTGCATGATCTTGATCCTTCTGCTTCCCAGGCGCTTCATGAGCTTATTTCTTT 1136
||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1103 AGCGTCGCTGCACGATCTAGATCCTTCTGCTTCCCAGGCGCTTCATGATCTTATTTCTTT 1162
Query 1137 AGTCCATGACCACGTTAATGCTGTTGATACAA 1168
||||||||||||||||||||||||||||||||
Sbjct 1163 AGTCCATGACCACGTTAATGCTGTTGATACAA 1194
Score = 337 bits (182), Expect = 3e-91
Identities = 192/197 (97%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 1257 AACCTTAGAAGCATTAATACTCCACATGCTCTCACCCATTGCTGCGGAAGTTCTAACACA 1316
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 AACTTTAGAAGCATTAATACTCCACATGCTCTCACCCATTGCTGCGGAAGTTCTAACACA 1483
Query 1317 GAAGTTTGATGAGATTGACCAACAGACTGGTGAAGAAGATAGAAACCAGTTCTTTCGGGA 1376
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1484 GAAGTTTGATGAGATTGACCAACAGACTGGTGAAGAAGATAGGACCCAGTTCTTTCGGGA 1543
Query 1377 ATTTTATGGTGCATTCGATGATGAAGCAGCTGCGATGGATATAATTTTAAGTAGGAAAGA 1436
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544 ATTTTATAGTGCATTCGATGATGAAGCAGCTGCGATGGATATAATTTTAAGTAGGAAAGA 1603
Query 1437 GTCTTTTGCATTTCAGG 1453
| |||||||||||||||
Sbjct 1604 GGCTTTTGCATTTCAGG 1620
Score = 134 bits (72), Expect = 4e-30
Identities = 74/75 (99%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 1169 AAGATGATCGCGTTGCCCATTTGCTTTGGAATCTTGAAGCATCTAGACTTCGGGATGTTC 1228
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1279 AAGATGATCGCGTTGCCCATTTGCTTTGGAATCTTGAAGCCTCTAGACTTCGGGATGTTC 1338
Query 1229 TCCTTGCAATGGCAC 1243
|||||||||||||||
Sbjct 1339 TCCTTGCAATGGCAC 1353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94377024600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5