BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488886
Length=1838
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19900.1 | Symbols: | PRLI-interacting factor, putative | c... 2599 0.0
> AT5G19900.1 | Symbols: | PRLI-interacting factor, putative |
chr5:6728160-6730045 REVERSE LENGTH=1886
Length=1886
Score = 2599 bits (1407), Expect = 0.0
Identities = 1742/1892 (92%), Gaps = 69/1892 (4%)
Strand=Plus/Plus
Query 1 ATGAACGATCAATCTAAGCTGATGAATCCGCCTCCTCCACCGCAAATGATTGGTCAGCCT 60
|||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||
Sbjct 1 ATGAACGATCAATCTAAGCTGATGAATCCGCCACCTCCACAGCAGATGATTGGTCAGCCT 60
Query 61 CCGCCGCAACAGAGGATGAATCCGCCGCTGCCGTCTTCTCAGGTACCACGGATTATGAAC 120
|| ||||||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 61 CCACCGCAACAGAGGATGAATCCGCCGCCGCCG---TCACAGGTACCACGGATTATGAAC 117
Query 121 CAGACTCC-TATGTTAGGCCAATCTCATCCGATTATGGGTATGAATCAGCAG---CCACA 176
|||| ||| | | |||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 118 CAGAGTCCGT-TATTAGGCCAATCTCATCCGATTATGGGAATGAATCAGCAGCCACCACA 176
Query 177 GGTTATGATG-A-A-CAACCAGCCTATGATGATGAATCCACGCAACTTTAACCTTAACCC 233
|||||||||| | | ||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 177 GGTTATGATGAACAGCAATCAGCCAATGATGATGAATCCACGCAACTTTAACCTTAACCA 236
Query 234 GAGTTTGAGTTCCGAGTATCAGCAGAATCTTCCTCCTAATAACTTTGTTTCGAAAATGAG 293
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 237 GAGTTTGAGTTCCGAGTATCAGCAGAATCTTGCTCCTAATAACTTTGGTTCGAAAATGAG 296
Query 294 TCGGAACAATTGGAAAGGGAAGAAGATTACAAGTGACAAGAGGCCAATGAT-G-G-AGCA 350
||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 297 TCGGAACAATTGGAAAGGGAAGAAGATTACAAGTGACAAGAGGCCAATGATGGAGCAGCA 356
Query 351 GCAGC--C-TATTAGGAGGATGCATAACTCTGGGATCCCTATGTATAACCCTCAGCAACT 407
||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 357 GCAGCAGCAAATTAGGAGGATGCATAACTCTGGGATTCCTATGTATAACCCTCAGCAACT 416
Query 408 ACCTGGTTCTGGTAGTAGT-A-ATCAG-G-T--TGGTTACAAGCCGCCGACTTTGAACGA 461
|||||||||||||||| | | | | | | |||||||||||||||||||||||| ||
Sbjct 417 TCCTGGTTCTGGTAGTATTCAGGTTGGTGCTGGTGGTTACAAGCCGCCGACTTTGAATGA 476
Query 462 GCTGCAGTCTCAGAACAGGTTGAAA-ACCAGGAAGTTTTACCCGAAGAAGAAGTATGGTA 520
||||||||||||||| ||||| ||| || ||||||||||| |||||||||||||||||||
Sbjct 477 GCTGCAGTCTCAGAATAGGTT-AAAGACGAGGAAGTTTTATCCGAAGAAGAAGTATGGTA 535
Query 521 ATCGATATGTTCCTTATGCTCCGAGGAACACGACTTCGTTTATCATCAGGGCGAAGAAAT 580
| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 536 ACCGATATGTTCCTTATGCGCCGAGGAACACGACTTCGTTTATTATCAGGGCGAAGAAAT 595
Query 581 CTGGTGGAATTGCTGAGTTGGTGTCTCCATGCCCTGTGACACCGGCGGTATTGCCTACGC 640
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 596 CTGGTGGAATTGCTGAGTTGGTGTCTCCATGCCCTGTGACACCGGCGGTGTTGCCTACGC 655
Query 641 CAATGTTCTCGCCGTCCAGGGAGGTGTTGGGTGATATGGCGAAAGAGGAATGGGGCGTTG 700
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 656 CAATGTTCTCGCCGTCTAGGGAGGTGTTGGGTGATATGGCGAAGGAGGAGTGGGGGGTTG 715
Query 701 ATGGTTATGGCTCCATGAAAGGGTTGATTAGGCTGAGAGCTGATGGAAATGAGTTGGAAC 760
||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 716 ATGGTTATGGCTCTATGAAAGGGCTGATTAGGCTGAGAGCTGATGGGAATGAGTTGGAAC 775
Query 761 CTTATGATGAGGATGATGAAGATGAAGGAGGGTCGAGTGAGAGTGATGTGGAGGAGCATG 820
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CTTATGAGGAGGATGATGAAGATGAAGGAGGGTCGAGTGAGAGTGATGTGGAGGAGCATG 835
Query 821 TTGAGGTTGAGAGGAGATTGGACCATGATTTGAGCCGGTTTGAGATGATTTATCCGAATT 880
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 836 TTGAGGTTGAGAGGAGATTGGATCATGATTTGAGTCGGTTTGAGATGATTTATCCGAATT 895
Query 881 ATGGTGGTTCGGAGTATAACAATGTTTTGGAAAACCGAGTGGATGATCAGGATAGCCATA 940
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 ATGGTGGTTCTGAGTATAACAATGTTTTGGAAAACCGAGTGGATGATCAGGATAGCCATA 955
Query 941 TTGCTCAACTGGAGGAAGAGAACTTAACCTTGAAGGAAAGGTTGTTCCTGATGGAAAGGG 1000
|||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 956 TTGCTCAACTGGAGGAAGAGAATTTAACTTTGAAGGAAAGGTTGTTTTTGATGGAAAGGG 1015
Query 1001 AGTTGGGAGACATGAGGAGAAGATTACAGTATCTCGAGAGGCGGGGTATGGTTGCTGAAG 1060
|||| || ||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1016 AGTTAGGTGACATGAGGAGAAGATTACAGTATCTCGAGAGGCGGGATATGGTTGCTCAAG 1075
Query 1061 ATGCTAACGAGGAGGTTGTGGAGAATGAGTCTGAAAGTGATGGTGATGATACAGGGGGAT 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 ATGCTAACGAGGAGGTTGTGGAGAATGAGTCTGAAAGTGATGGTGATGATACAGGGGGAT 1135
Query 1121 CTGATGCACGTACTAGTGGTGAAACAAAGGAGAACCATGTAGCTGCAGAGGACATTTGTA 1180
||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1136 CTGATGCTCGTACTAGTGGTGAAACAAAGGAGAACCATGTAGCTGCAGAAGATGTTTGTA 1195
Query 1181 TGCAGGATGTTGCAGCGAGGGATAATGAGGCTGCGGTGAAAGAAATCAACAACAACAGCA 1240
||||||||||||| || |||||||||||||||| |||||| |||| |||||| |||||||
Sbjct 1196 TGCAGGATGTTGCGGCAAGGGATAATGAGGCTGTGGTGAAGGAAAACAACAATAACAGCA 1255
Query 1241 AGAGCGTGGATGGAGTTAAAGAGAACAAACAATCGGTTGGTGTGGGAAGTTCTGGGGAAA 1300
|||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1256 AGAGCGTGGATGAAGTGAAAGCGAACAAACAATCGGTTGGTGTGGGAAGTTCTGGGGAAA 1315
Query 1301 GTAAACCTGAAGGTAAGGAAAAAGCTGAGACAGATTTTCGGGAAGTTTCAGGGGAACAAT 1360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1316 GTAAACCTGAAGGTAAGGAAAAAGCTGAGACAGAGTTTCGGGAAGTTTCAGGGGAACAAT 1375
Query 1361 GCGAGGAAGCCAACCAAGGT---------ATGGATCAAAGTAAGGAAAGTGAAATGGGAA 1411
| ||||||| |||||||||| ||||||||||||||||||| |||||||| ||
Sbjct 1376 GTGAGGAAGACAACCAAGGTGTGGTTGGTATGGATCAAAGTAAGGAAAATGAAATGGCAA 1435
Query 1412 TTGAGAA--T-GA---T---TCTG----T--T---G--G-AAAACAATGAGC-AGCCATA 1449
||||||| | || | |||| | | | | |||||||||||| | |||||
Sbjct 1436 TTGAGAAGCTTGAAGATGCGTCTGAGAATGATTCTGCTGGAAAACAATGAGCGA-CCATA 1494
Query 1450 TGATACCTGGACCAAGGAGGGAAGCAGACGAGAACCCATGATGATAGGCAGTGGT-AACT 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1495 TGATACCTGGACCAAGGAGGGAAGCAGACGAGAACCCATGATGATAGGCAGTGGTTAACT 1554
Query 1509 AACTGGTGATGCAAA-GTTGA-TGAATACCATTTTCACATTGAAATAGTGTAAGTCTCTT 1566
||||||||||||||| ||||| || |||| | |||||| |||||||| ||||||||||||
Sbjct 1555 AACTGGTGATGCAAAAGTTGAATGCATACGAGTTTCACTTTGAAATAATGTAAGTCTCTT 1614
Query 1567 ATATGCACAGGCGTCAATGATGGATCTCTGCAGCAGCTCTATGATGTATATGTCAAAATG 1626
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1615 GTATGCACAGGCGTCAGTGATGGATATCTGCAGCAGCTCTATGATGTATATGTCAAAATG 1674
Query 1627 TACTTGTCTTAGTAGGTGTAGTCTAGTTCTCTCACCGCTTTTGGTACCAGAGTTTAGGAG 1686
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1675 TACTTGTCTTAGTAGGTGTAGTCTAGTTCTCTGACCGCTTTTGGTACCAGAGTTTAGGAG 1734
Query 1687 GCCCGCTTTCACGGAGAAGTTCATATGAAGTCATGGTAAGCTTGtttttttatttttctt 1746
|| |||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1735 GCTCGCTTTCACGGAGAAGTTCATATGAAGTCATGGTAAGCTTGTTTTTTT-T----CTT 1789
Query 1747 ttCTGGTACATCTTGTTGATGATAAGATAGATTGTAGTTAAAGCAAGGTTCATTGTAGTG 1806
||||||||||||||||||||||||| | ||||||||| ||| || ||||||||||||||
Sbjct 1790 TTCTGGTACATCTTGTTGATGATAA--TGGATTGTAGTAAAA-CAGGGTTCATTGTAGTG 1846
Query 1807 AAAGA-CTTATGGATGATAGAGTTTTATGTTT 1837
||| | ||||||| ||||||||||||||||||
Sbjct 1847 AAAAAACTTATGGGTGATAGAGTTTTATGTTT 1878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90963387540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5