BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488886 Length=1838 Score E Sequences producing significant alignments: (Bits) Value AT5G19900.1 | Symbols: | PRLI-interacting factor, putative | c... 2599 0.0 > AT5G19900.1 | Symbols: | PRLI-interacting factor, putative | chr5:6728160-6730045 REVERSE LENGTH=1886 Length=1886 Score = 2599 bits (1407), Expect = 0.0 Identities = 1742/1892 (92%), Gaps = 69/1892 (4%) Strand=Plus/Plus Query 1 ATGAACGATCAATCTAAGCTGATGAATCCGCCTCCTCCACCGCAAATGATTGGTCAGCCT 60 |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| Sbjct 1 ATGAACGATCAATCTAAGCTGATGAATCCGCCACCTCCACAGCAGATGATTGGTCAGCCT 60 Query 61 CCGCCGCAACAGAGGATGAATCCGCCGCTGCCGTCTTCTCAGGTACCACGGATTATGAAC 120 || ||||||||||||||||||||||||| |||| || ||||||||||||||||||||| Sbjct 61 CCACCGCAACAGAGGATGAATCCGCCGCCGCCG---TCACAGGTACCACGGATTATGAAC 117 Query 121 CAGACTCC-TATGTTAGGCCAATCTCATCCGATTATGGGTATGAATCAGCAG---CCACA 176 |||| ||| | | |||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 118 CAGAGTCCGT-TATTAGGCCAATCTCATCCGATTATGGGAATGAATCAGCAGCCACCACA 176 Query 177 GGTTATGATG-A-A-CAACCAGCCTATGATGATGAATCCACGCAACTTTAACCTTAACCC 233 |||||||||| | | ||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 177 GGTTATGATGAACAGCAATCAGCCAATGATGATGAATCCACGCAACTTTAACCTTAACCA 236 Query 234 GAGTTTGAGTTCCGAGTATCAGCAGAATCTTCCTCCTAATAACTTTGTTTCGAAAATGAG 293 ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 237 GAGTTTGAGTTCCGAGTATCAGCAGAATCTTGCTCCTAATAACTTTGGTTCGAAAATGAG 296 Query 294 TCGGAACAATTGGAAAGGGAAGAAGATTACAAGTGACAAGAGGCCAATGAT-G-G-AGCA 350 ||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| Sbjct 297 TCGGAACAATTGGAAAGGGAAGAAGATTACAAGTGACAAGAGGCCAATGATGGAGCAGCA 356 Query 351 GCAGC--C-TATTAGGAGGATGCATAACTCTGGGATCCCTATGTATAACCCTCAGCAACT 407 ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 357 GCAGCAGCAAATTAGGAGGATGCATAACTCTGGGATTCCTATGTATAACCCTCAGCAACT 416 Query 408 ACCTGGTTCTGGTAGTAGT-A-ATCAG-G-T--TGGTTACAAGCCGCCGACTTTGAACGA 461 |||||||||||||||| | | | | | | |||||||||||||||||||||||| || Sbjct 417 TCCTGGTTCTGGTAGTATTCAGGTTGGTGCTGGTGGTTACAAGCCGCCGACTTTGAATGA 476 Query 462 GCTGCAGTCTCAGAACAGGTTGAAA-ACCAGGAAGTTTTACCCGAAGAAGAAGTATGGTA 520 ||||||||||||||| ||||| ||| || ||||||||||| ||||||||||||||||||| Sbjct 477 GCTGCAGTCTCAGAATAGGTT-AAAGACGAGGAAGTTTTATCCGAAGAAGAAGTATGGTA 535 Query 521 ATCGATATGTTCCTTATGCTCCGAGGAACACGACTTCGTTTATCATCAGGGCGAAGAAAT 580 | ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 536 ACCGATATGTTCCTTATGCGCCGAGGAACACGACTTCGTTTATTATCAGGGCGAAGAAAT 595 Query 581 CTGGTGGAATTGCTGAGTTGGTGTCTCCATGCCCTGTGACACCGGCGGTATTGCCTACGC 640 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 596 CTGGTGGAATTGCTGAGTTGGTGTCTCCATGCCCTGTGACACCGGCGGTGTTGCCTACGC 655 Query 641 CAATGTTCTCGCCGTCCAGGGAGGTGTTGGGTGATATGGCGAAAGAGGAATGGGGCGTTG 700 |||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||| Sbjct 656 CAATGTTCTCGCCGTCTAGGGAGGTGTTGGGTGATATGGCGAAGGAGGAGTGGGGGGTTG 715 Query 701 ATGGTTATGGCTCCATGAAAGGGTTGATTAGGCTGAGAGCTGATGGAAATGAGTTGGAAC 760 ||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 716 ATGGTTATGGCTCTATGAAAGGGCTGATTAGGCTGAGAGCTGATGGGAATGAGTTGGAAC 775 Query 761 CTTATGATGAGGATGATGAAGATGAAGGAGGGTCGAGTGAGAGTGATGTGGAGGAGCATG 820 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776 CTTATGAGGAGGATGATGAAGATGAAGGAGGGTCGAGTGAGAGTGATGTGGAGGAGCATG 835 Query 821 TTGAGGTTGAGAGGAGATTGGACCATGATTTGAGCCGGTTTGAGATGATTTATCCGAATT 880 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 836 TTGAGGTTGAGAGGAGATTGGATCATGATTTGAGTCGGTTTGAGATGATTTATCCGAATT 895 Query 881 ATGGTGGTTCGGAGTATAACAATGTTTTGGAAAACCGAGTGGATGATCAGGATAGCCATA 940 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 896 ATGGTGGTTCTGAGTATAACAATGTTTTGGAAAACCGAGTGGATGATCAGGATAGCCATA 955 Query 941 TTGCTCAACTGGAGGAAGAGAACTTAACCTTGAAGGAAAGGTTGTTCCTGATGGAAAGGG 1000 |||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| Sbjct 956 TTGCTCAACTGGAGGAAGAGAATTTAACTTTGAAGGAAAGGTTGTTTTTGATGGAAAGGG 1015 Query 1001 AGTTGGGAGACATGAGGAGAAGATTACAGTATCTCGAGAGGCGGGGTATGGTTGCTGAAG 1060 |||| || ||||||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 1016 AGTTAGGTGACATGAGGAGAAGATTACAGTATCTCGAGAGGCGGGATATGGTTGCTCAAG 1075 Query 1061 ATGCTAACGAGGAGGTTGTGGAGAATGAGTCTGAAAGTGATGGTGATGATACAGGGGGAT 1120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1076 ATGCTAACGAGGAGGTTGTGGAGAATGAGTCTGAAAGTGATGGTGATGATACAGGGGGAT 1135 Query 1121 CTGATGCACGTACTAGTGGTGAAACAAAGGAGAACCATGTAGCTGCAGAGGACATTTGTA 1180 ||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 1136 CTGATGCTCGTACTAGTGGTGAAACAAAGGAGAACCATGTAGCTGCAGAAGATGTTTGTA 1195 Query 1181 TGCAGGATGTTGCAGCGAGGGATAATGAGGCTGCGGTGAAAGAAATCAACAACAACAGCA 1240 ||||||||||||| || |||||||||||||||| |||||| |||| |||||| ||||||| Sbjct 1196 TGCAGGATGTTGCGGCAAGGGATAATGAGGCTGTGGTGAAGGAAAACAACAATAACAGCA 1255 Query 1241 AGAGCGTGGATGGAGTTAAAGAGAACAAACAATCGGTTGGTGTGGGAAGTTCTGGGGAAA 1300 |||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 1256 AGAGCGTGGATGAAGTGAAAGCGAACAAACAATCGGTTGGTGTGGGAAGTTCTGGGGAAA 1315 Query 1301 GTAAACCTGAAGGTAAGGAAAAAGCTGAGACAGATTTTCGGGAAGTTTCAGGGGAACAAT 1360 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1316 GTAAACCTGAAGGTAAGGAAAAAGCTGAGACAGAGTTTCGGGAAGTTTCAGGGGAACAAT 1375 Query 1361 GCGAGGAAGCCAACCAAGGT---------ATGGATCAAAGTAAGGAAAGTGAAATGGGAA 1411 | ||||||| |||||||||| ||||||||||||||||||| |||||||| || Sbjct 1376 GTGAGGAAGACAACCAAGGTGTGGTTGGTATGGATCAAAGTAAGGAAAATGAAATGGCAA 1435 Query 1412 TTGAGAA--T-GA---T---TCTG----T--T---G--G-AAAACAATGAGC-AGCCATA 1449 ||||||| | || | |||| | | | | |||||||||||| | ||||| Sbjct 1436 TTGAGAAGCTTGAAGATGCGTCTGAGAATGATTCTGCTGGAAAACAATGAGCGA-CCATA 1494 Query 1450 TGATACCTGGACCAAGGAGGGAAGCAGACGAGAACCCATGATGATAGGCAGTGGT-AACT 1508 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1495 TGATACCTGGACCAAGGAGGGAAGCAGACGAGAACCCATGATGATAGGCAGTGGTTAACT 1554 Query 1509 AACTGGTGATGCAAA-GTTGA-TGAATACCATTTTCACATTGAAATAGTGTAAGTCTCTT 1566 ||||||||||||||| ||||| || |||| | |||||| |||||||| |||||||||||| Sbjct 1555 AACTGGTGATGCAAAAGTTGAATGCATACGAGTTTCACTTTGAAATAATGTAAGTCTCTT 1614 Query 1567 ATATGCACAGGCGTCAATGATGGATCTCTGCAGCAGCTCTATGATGTATATGTCAAAATG 1626 ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 1615 GTATGCACAGGCGTCAGTGATGGATATCTGCAGCAGCTCTATGATGTATATGTCAAAATG 1674 Query 1627 TACTTGTCTTAGTAGGTGTAGTCTAGTTCTCTCACCGCTTTTGGTACCAGAGTTTAGGAG 1686 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1675 TACTTGTCTTAGTAGGTGTAGTCTAGTTCTCTGACCGCTTTTGGTACCAGAGTTTAGGAG 1734 Query 1687 GCCCGCTTTCACGGAGAAGTTCATATGAAGTCATGGTAAGCTTGtttttttatttttctt 1746 || |||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 1735 GCTCGCTTTCACGGAGAAGTTCATATGAAGTCATGGTAAGCTTGTTTTTTT-T----CTT 1789 Query 1747 ttCTGGTACATCTTGTTGATGATAAGATAGATTGTAGTTAAAGCAAGGTTCATTGTAGTG 1806 ||||||||||||||||||||||||| | ||||||||| ||| || |||||||||||||| Sbjct 1790 TTCTGGTACATCTTGTTGATGATAA--TGGATTGTAGTAAAA-CAGGGTTCATTGTAGTG 1846 Query 1807 AAAGA-CTTATGGATGATAGAGTTTTATGTTT 1837 ||| | ||||||| |||||||||||||||||| Sbjct 1847 AAAAAACTTATGGGTGATAGAGTTTTATGTTT 1878 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90963387540 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5