BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488887
Length=2328
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19920.1 | Symbols: | Transducin/WD40 repeat-like superfami... 3291 0.0
> AT5G19920.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:6733216-6737373 REVERSE LENGTH=2484
Length=2484
Score = 3291 bits (1782), Expect = 0.0
Identities = 2150/2321 (93%), Gaps = 51/2321 (2%)
Strand=Plus/Plus
Query 1 AAAAA-ATGTGGTTCCAAAATTGAAACA-ACGAGAGGGAAAAATCAATCCCCACTACGCA 58
||||| ||| |||||||||||||||| | |||||||||||||| ||||||||||||||||
Sbjct 1 AAAAACATGAGGTTCCAAAATTGAAA-AGACGAGAGGGAAAAAGCAATCCCCACTACGCA 59
Query 59 CGATCGGGCGGGAATAAAAGGGTGAGGAGGAAGACGAACGGAGACTGCAATGGCTACGAC 118
|||||||||||||||||||||||| ||| |||||||||| ||| ||||||||||||||||
Sbjct 60 CGATCGGGCGGGAATAAAAGGGTG-GGAAGAAGACGAACCGAGTCTGCAATGGCTACGAC 118
Query 119 GGCGATGAACAAACCTAAAATTGAACAA-GGG--G-A--AGAAGTAGAAGCAGAAGCGAG 172
||||||||| |||||||||||||||||| ||| | | |||||||||||||||||||||
Sbjct 119 GGCGATGAATAAACCTAAAATTGAACAAGGGGAAGAAGTAGAAGTAGAAGCAGAAGCGAG 178
Query 173 AACGTTCTCGACTCAAATCCCAGATGATAGAGAAGCTCTTTTAGAGTTCATGGACCAGCG 232
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 179 AACGTTCTCGACTCAAATCCCAGATGATAGAGAAGCTCTTTTAGAGTTTATGGACCAGCG 238
Query 233 TGCCAAATCAATCCAACGCCTTAAAGACCAGATTTCAAGTTTGGACAGGAAGCTTGCTGA 292
|||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 239 TGCCAAATCAATCCAACGCCTTAAAGACCAAATCTCAAGTTTGGATAGGAAGCTTGCTGA 298
Query 293 AGAGAGAAAACTGATGGCAGATGCTGAGGCGAAATTTTTAAAAATTGATCGTGTTGAAAA 352
|||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| |||
Sbjct 299 AGAGAGAAAACTGATGGCAGATGCGGAGGCTAAATTTTTACAAATTGATCGTGTTGGAAA 358
Query 353 TGGTACCTTTTCTAAGCCAAAACCTAAAGTGCCTGGTAAAACTGGAAGTATTCTTGGTAT 412
||||| |||||||||| ||||||| |||| ||||||||||||||||||||| ||||||||
Sbjct 359 TGGTATCTTTTCTAAGTCAAAACCAAAAGCGCCTGGTAAAACTGGAAGTATACTTGGTAT 418
Query 413 AGCAGAGTTCTGGACCGAGGGAAATAAGGCAAAGACTGCCAATGAAAACTCTACTCCACA 472
|||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 419 AGCAGAGTTCTGGAACGAGGGAAATAAGACGAAGACTGCCAATGAAAACTCTACTCCACA 478
Query 473 ATCACGTAGTGAGATGGAATCCTTGAAAATGCCATCCATTATCTTACCCCCTTCTTTCAA 532
||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| ||
Sbjct 479 ATCACCTAGTGAGATGGAATCCTTGAAATTGCCATCCATTATCTTACCGCCTTCTTTTAA 538
Query 533 ACGAAGAGCTTCTGCTCCCGTCAGAGCAGAAGTAAATGAGACCACCCAAGCTCAACCCAT 592
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 539 ACGAAGAGCTTCTGCTACCGTCAGAGCTGAAGTAAATGAGACCACCCAAGCTCAACCCAT 598
Query 593 GGCTACAAGGGATTATAACATCCCAAAGGAAGACACAAGTGGCCCTGAGGCCAAGAGACC 652
||||||||||||||||||||| |||| |||||||||| ||||||| ||||||||||||||
Sbjct 599 GGCTACAAGGGATTATAACATTCCAAGGGAAGACACATGTGGCCCCGAGGCCAAGAGACC 658
Query 653 TCGTAGTATTCCTGATGAAGTAGTAAGGGAAACCCAAGGTCGAGAGAAGGAAGCTCAACC 712
||||||||||||||||||||| |||||||||||||||| |||||| |||||| |||||||
Sbjct 659 TCGTAGTATTCCTGATGAAGTGGTAAGGGAAACCCAAGATCGAGATAAGGAAACTCAACC 718
Query 713 CATGGCTACGATGGATTATAACGTTCCAAAAGAAGACAAAAATGTCCCTGAGGCCAAGAG 772
||||||||||| || |||| | |||||||||||||| |||| || ||||||||||| |||
Sbjct 719 CATGGCTACGAGGGGTTATGATGTTCCAAAAGAAGATAAAAGTGGCCCTGAGGCCAGGAG 778
Query 773 -TTCTCATAGTATTCCTAATGAAGTGATAAGGGAATCCCAAGGTCGCGATAACGTAGCTC 831
|| | ||||||||| |||||||| | ||||||||||||||||| ||||||| |||||
Sbjct 779 ATT-GCGGAGTATTCCTGATGAAGTGGTGAGGGAATCCCAAGGTCGAGATAACGCAGCTC 837
Query 832 AACCCATGGATACAAGGGATTATAATGTCCCAAAGGATGACAAAAGTGGTCTTGAGGCCA 891
| ||||||| ||||||||||| ||||||||||||||| ||||||||||||||||| ||
Sbjct 838 AGCCCATGGCTACAAGGGATTCTAATGTCCCAAAGGAAGACAAAAGTGGTCTTGA---CA 894
Query 892 AGAGATCTTGTAGTATTCCTAATGAAGTGGTGTGGGAAACTCAAGCTCAAGTTCGAGATA 951
|||||||| ||||||||||||||||| || | | ||||||||| | |||||
Sbjct 895 AGAGATCTCGTAGTATTCCTAATGAA---GT-T--G---CTCAAGCTC-----C-AGATA 939
Query 952 ACCACACTAATAAGGATTTTGCAAAGCCGAGGATCAGAGTTTCTTCTAAC-TTATCCCAA 1010
||||||||||||||||||| |||||||| ||||||||||||||||||||| || || |||
Sbjct 940 ACCACACTAATAAGGATTTGGCAAAGCCAAGGATCAGAGTTTCTTCTAACATT-TCTCAA 998
Query 1011 CAAGGACAACAGG-AAAATGCTGAATTCCGAGGACATGATGAGTTGATAGCACTTATAGG 1069
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 999 CAAGGACAACAGGAAAAAT-CTGAATTCCGAGGACATGATGAGTTGATAGCACTTATAGG 1057
Query 1070 TAGAAGCTCTTTGCGTCCCACAATTGAAGGTCGTACTGTAGGTATGCTACCAAGTTGCCA 1129
|||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct 1058 TAGAAGCTCTTTGCGTCCCACAATTGAAGGCCGTACTGCCGGCATGCTACCAAGTTGCCA 1117
Query 1130 CACGAAAAGAATGAGAAGTCTTGCTATTTCTCCTTCAAACCGTGAGCTATTTGCTACAAG 1189
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1118 CACGAAAAGAATGAGAAGTCTTGCTCTTTCTCCTTCCAACCGTGAGCTATTTGCTACAAG 1177
Query 1190 TGCATTGGATGGGGCAGTTCATTTCTGGAAGCTTCAGTCTGATAGGTCCACAGCTACTTT 1249
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1178 TGCATTGGATGGGGCTGTTCATTTCTGGAAGCTTCAGTCTGATAGGTCCACCGCTACTTT 1237
Query 1250 GTTTAAGACGGTTAATCGGGTAGCAATAGATCAGAAGAAATGGGCAGAGGATATAGCTTG 1309
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1238 GTTTAAGACGGTTAATCGGGTAGCAGTAGATCAGAAGAAATGGGCAGAAGATATAGCTTG 1297
Query 1310 GCATCCACACAAGAGTGCACTTTTCTCTGTGTATACTGCAGATGAAGGTCACCCTCAGAT 1369
||||||||| |||| |||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1298 GCATCCACATAAGAATGCACTTTTCTCCGTGTATACTGCAGATGATGGTCACCCTCAGAT 1357
Query 1370 ATCAGCCATATATCTGAATGAAGCTGGAGAGAGTTGTAAGTCACAATTTCTGGAGGGCAG 1429
||||||||||||||||||||||||||||||||| ||| |||| |||||| |||||| |||
Sbjct 1358 ATCAGCCATATATCTGAATGAAGCTGGAGAGAGATGTGAGTCGCAATTTATGGAGGACAG 1417
Query 1430 GCCTCATAGCAAAGGTCTTATCAACAGAATCATGTTTACGCCTTGGGATGATCCTTGTTT 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1418 GCCTCATAGCAAAGGTCTTATCAACAGAATCATGTTTACGCCTTGGGATGATCCTTGCTT 1477
Query 1490 CATCACAGGTGGGAGTGACCATGCAGTAGTGTTATGGCGGGATCAATGTGAGAATAATGC 1549
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1478 CATCACAGGTGGGAGTGACCATGCAGTAGTGTTATGGCGGGATCAGTGTGAGAATAATGC 1537
Query 1550 GTGGAAGCCAACGCTTCTGCATAGGGACTTGCACTCATCGGCTGTGATGGGAGTTACTGG 1609
||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1538 GTGGAAGCCGACGCTTCTGCATAGGGACTTGCATTCGTCGGCTGTGATGGGAGTTACTGG 1597
Query 1610 AATGCGCCATAACAATCTCGTCTTGTCATGTGGAGACGATAGGAGATTTGTTGGGTTTGA 1669
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1598 AATGCGCCATAACAATCACGTCTTGTCATGTGGAGACGATAGGAGATTTGTTGGGTTTGA 1657
Query 1670 TGCCCGAGAAGAAAAAGTCACGTTTAAACATAGACTAGACAACAGATGCACTAATATACT 1729
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
Sbjct 1658 TGCCCGAGAAGAAAAAGTCACATTTAAACATAGACTAGACAACAGATGCACAAATATAAT 1717
Query 1730 GCCAAACCCACGGGATGTTAATCTTGTCATGGTTCACACAAGGCAGCTAGACCGGCAACT 1789
||||||||| || ||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1718 GCCAAACCCGCGAGATGTTAATCTTGTCATGGTTAACACGAGGCAGCTAGACCGGCAACT 1777
Query 1790 GCGGTTGTATGATGTTAGATTGCCTCAGACAGAACTATTTTCTTTTGGGTGGAAGCAAGA 1849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1778 GCGGTTGTATGATGTTAGATTGCCTCAGACAGAACTATTTTCTTTTGGGTGGAAGCAAGA 1837
Query 1850 AAGCAGTGAATCGCAGTCGGCTCTAATTAATCAGTCTTGGTCTCCAGATGGTTTACACAT 1909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1838 AAGCAGTGAATCGCAGTCGGCTCTAATTAATCAGTCTTGGTCTCCAGATGGTTTACACAT 1897
Query 1910 CTCATCTGGTTCTGCAGACCCTGTGATCCACATATTTGATATCCGCTACAATGCACCGAG 1969
||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 1898 CTCATCTGGTTCTGCAGACCCCGTGATCCACATCTTTGATATCCGATACAATGCACCGAG 1957
Query 1970 TCCATCTCTCTCGATGAAAGCTCATAAGAAAAGAGTGTTTAAAGCGGAATGGCACTCTTC 2029
|| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 1958 CCCGTCTCTCTCGATGAAAGCTCATAAGAAAAGAGTGTTCAAAGCCGAGTGGCACTCTTC 2017
Query 2030 TTATCCGCTGCTTGTCTCCATCTCATCAGATTTAGCAATAGGGATTCACAAGCTATGGTG 2089
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2018 TTATCCGCTGCTCGTCTCCATCTCATCAGATTTAGCAATTGGGATTCACAAGCTATGGTG 2077
Query 2090 AAAACT-GTTAAAGCCATCACCTCCTGAATATTTGAAGGCCAGTAACTTCTGAAACAGAA 2148
|||||| || ||||||||||||| |||| || |||||||| |||||||||||||||||
Sbjct 2078 AAAACTTGT-AAAGCCATCACCT---GAAT-TT-GAAGGCCATTAACTTCTGAAACAGAA 2131
Query 2149 CTTGTCTTG-CAAGTTGTGG-CAAGGTGTTGATTGGCAAGGAAGA-CTCGACCACAGCAC 2205
||||||||| ||||||| | ||||||||||||||||||| |||| || || |||||||
Sbjct 2132 CTTGTCTTGGCAAGTTG-GCACAAGGTGTTGATTGGCAAGTAAGAACT-GAGTACAGCAC 2189
Query 2206 GCACACTGGATACAAAAACTGACTGTATTGGGAGTTGAATAGGTCAGTCCCAGGGTCTGA 2265
||| |||||||| ||||||| || | |||||||| |||||||||||| |||||||||
Sbjct 2190 GCAGGCTGGATACGAAAACTGTCT-T---GGGAGTTGCATAGGTCAGTCC-AGGGTCTGA 2244
Query 2266 AGGCTCTGGTATGTTAATTTTGTTTGTTAACTTTGGGAAAC 2306
|||||| || | || ||||| ||| |||||| ||||||||
Sbjct 2245 TGGCTCTTGTCTTTTGATTTTTTTTTTTAACTGTGGGAAAC 2285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115561654590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5