BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488888
Length=1090
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19930.1 | Symbols: | Protein of unknown function DUF92, tr... 1471 0.0
> AT5G19930.1 | Symbols: | Protein of unknown function DUF92,
transmembrane | chr5:6737578-6739348 REVERSE LENGTH=1226
Length=1226
Score = 1471 bits (796), Expect = 0.0
Identities = 913/970 (94%), Gaps = 5/970 (1%)
Strand=Plus/Plus
Query 1 CCCGACGCTGAACTGAATCTTCGTCGTCAACAGATTCTCCGCCACTGGAAGAAATGGAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 CCCGACGCTGAACTGAATCTTCGTCGTCAACAGATTCTCCGCCACTGGAAGAAATGGAAA 72
Query 61 TGTCGCCGCAGTTTAGGCTTATCGTCGCCGTCGTCATTTCTTCTCTCATCGCTTTCCGAT 120
||||||||| || || |||||| ||||||| |||||||||||||||||||||||||||
Sbjct 73 CGTCGCCGCAATTCAGACTTATCTTCGCCGTAATCATTTCTTCTCTCATCGCTTTCCGAT 132
Query 121 CGTACAAGAGGAAGTCGCTCGATCTCTCCGGTGGAATTGCTGGATTCCTTGTTATGACCA 180
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 133 CGTACAAGCGGAAGTCGCTCGATCTCTCCGGTGGAATTGCTGGATTCCTCGTTATGACCA 192
Query 181 TCCATTTCACCGCCGGTTTCAGGTACGGAGCTTTGCTGCTTGTATTCTTTCTTACTTCCT 240
| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 193 TTCACTTCACCGCCGGTTTCAGGTACGGAGCTCTGCTGCTTGTATTCTTTCTTACTTCCT 252
Query 241 CGAAGCTTACCAAAGTTGGCGAAGATAAAAAACGACGCGTTGATGTTGAGTTCAAAGAAG 300
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 253 CGAAACTTACCAAAGTTGGCGAAGATAAAAAAAGACGCGTTGATGTTGAGTTCAAAGAAG 312
Query 301 GTGGACAAAGGAACTGGGTACAAGTGCTTTGCAATGGTGGAATTGCATCAGTTCTAGTTG 360
|||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||
Sbjct 313 GTGGACAAAGGAACTGGGTACAAGTGCTATGCAATAGTGGAATTGCTTCAGTTCTAGTTG 372
Query 361 TAATTGCTTGTACTTTAACGGGTTGGCAGGACAAGTGTTTGGACTCGAAGCAGTCAGAAA 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 373 TAATTGCTTGTACTTTAACGGGTTGGAAGGACAAGTGTTTGGACTCGAAGCAGTCAGAAA 432
Query 421 CTGTAACAGCTCTTATTGGTGGGATCATCGGTCATTACGCGTGCTGTAATGGAGACACTT 480
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 433 TTGTAACAGCTCTTATTGGTGGGATCATTGGTCATTACGCCTGCTGTAATGGAGACACTT 492
Query 481 GGTCCTCAGAGCTTGGGGTTCTTAGTGATGCCCAGCCTCGACTAATCACAACGCTAAAGC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 493 GGTCCTCAGAGCTTGGGGTTCTTAGTGATGCCCAGCCTCGACTAATCACAACGTTTAAGC 552
Query 541 CGGTGAAGAAGGGCACAAATGGTGGAGTTACAAAGGCAGGACTCTTAGCTGCCTTGGCAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 CGGTGAAGAAGGGCACAAATGGTGGAGTTACAAAGGCAGGACTCTTAGCTGCCTTGGCAG 612
Query 601 CCGGCACCACTGTTGGAGTAACGTTCCTCATCTTTGGATTCTTTACCGCGAGTTGTGCAA 660
| ||||||||||||||| |||| ||||| ||||| ||| |||||||||||||||||||||
Sbjct 613 CAGGCACCACTGTTGGATTAACATTCCTTATCTTCGGACTCTTTACCGCGAGTTGTGCAA 672
Query 661 GTGATGTGGCTCTCAAGCAACTCTTAGTCATTCCAGTCTCTGCATTAGCTGGATTATGTG 720
||||||| ||||| ||||||||||||||||| ||| |||||||| |||||||| ||||||
Sbjct 673 GTGATGTAGCTCTAAAGCAACTCTTAGTCATACCACTCTCTGCACTAGCTGGACTATGTG 732
Query 721 GGAGTCTTATTGATTCTGTGCTAGGAGCAACCATCCAATTCAGTGGTTTCTGTTCTGTCC 780
||||||||||||||||| | |||||||||||||| ||||||||||||||||| |||||||
Sbjct 733 GGAGTCTTATTGATTCTATACTAGGAGCAACCATTCAATTCAGTGGTTTCTGCTCTGTCC 792
Query 781 GGAACAAGGTTGTAGGGAAACCCGGG-CCGACGGTAAAGAAGATTTCAGGTGTAGACATT 839
|||||||||||||||||||||| ||| || || |||||||||||||||||||| ||||||
Sbjct 793 GGAACAAGGTTGTAGGGAAACC-GGGTCCAACCGTAAAGAAGATTTCAGGTGTGGACATT 851
Query 840 CTTGACAACAATGGTGTGAACTTTGTTTCCATACTATTGACATCTTTTCTGACTTCCATT 899
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 852 CTTGACAACAATGGTGTGAACTTTGTCTCCATACTCTTGACATCTTTTCTGACTTCCATT 911
Query 900 GCTTCAGTGTACATTTTCTGAAT-ACTAAAAGCTAGCAGTCTGTTTTCTTCACCAGACTG 958
||||| ||||||||||||||||| | | || |||| || |||||||||| || ||||||
Sbjct 912 GCTTCTGTGTACATTTTCTGAATGA-TGAA-GCTACCAACCTGTTTTCTTGACTAGACTG 969
Query 959 TTTTAAATTT 968
||||| ||||
Sbjct 970 TTTTAGATTT 979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53413379880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5