BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488891 Length=1627 Score E Sequences producing significant alignments: (Bits) Value AT5G19950.1 | Symbols: | Domain of unknown function (DUF1767) ... 2109 0.0 > AT5G19950.1 | Symbols: | Domain of unknown function (DUF1767) | chr5:6740777-6743773 REVERSE LENGTH=1789 Length=1789 Score = 2109 bits (1142), Expect = 0.0 Identities = 1317/1402 (94%), Gaps = 10/1402 (1%) Strand=Plus/Plus Query 1 CAATTGGTTTAGCGCGACAAGAGCATCGACGCAATGGAGGGAACATCAAGCTCCTCCGCC 60 ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 39 CAATTGGTTTAGCGCGACAAGAGCATCAACGCAATGGTGGGAACATCAAGCTCCTCCGCC 98 Query 61 GCCGGCCACACCCACACCGTCGTGATAAATGCCCTAACTAGCCGGGGCTGGTGCTTCAGA 120 | || |||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 99 GGCGACCACACCCACACCGTCGTGATAAATGCCCTAACTAGTCGGGGCTGGTGCTTCAGA 158 Query 121 GACGTCGAATACTTGAAATCTCTGGTCACTGATATCTCCTCCTTGATCGGCGGTGGTAAT 180 |||||||||||||||||||| ||||||||||| ||||| |||||||||||||| || ||| Sbjct 159 GACGTCGAATACTTGAAATCCCTGGTCACTGAAATCTCTTCCTTGATCGGCGGCGGCAAT 218 Query 181 CAAACAGGCGCGGTTGTGGAGTCAGTGGAGGCGGAGCTGCTTAACATGGATATTAAGTTA 240 |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 219 AAAACAGGCGCCATCGTGGAGTCAGTGGAGGCGGAGCTGCTTAACATGGATATTAAGTTA 278 Query 241 ATCGGAGGTAAGTCCCTCCCAGACCCGACCGAGTTACGCAGGTGTTCTCATCTTCAAGGC 300 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 279 ATCGGAGGTAAATCCCTCCCGGACCCGACCGAGTTACGCAGGTGTTCTCATCTTCAAGGC 338 Query 301 CCCAAAGTTCTCCAGATAAGTTCTGTTAGGGATGTTACAAGAAGTAGCGCAGAGGAATTT 360 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 339 CCCAAAGTTCTCCAGATAAGTTATGTTAGGGATGTTACAAGAAGTAGCGCAGAGGAATTT 398 Query 361 TTGGGAAGTTCTACTGGTAAACGAGTGCTAAAATTCGCTCTGACTGATGGCAAGACCGAG 420 |||||||||| ||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 399 GTGGGAAGTTCCACTGGTAAACGAGTGCTAAAATTCGCTCTGACTGACGGGAAGACCGAA 458 Query 421 ATATCCGCGCTTGAGTACTCTCATATACCAACGATTAACAATGATGTAACCCCTGGTACT 480 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 459 ATATCCGCGCTTGAGTACTCTCATATACCAACGATTAACAATGATGTCACTCCTGGTACT 518 Query 481 AAGGTCCGTCTAGAAAATAAGGCTGTGATACGTGACGGTTTAGTATGTTTGACTCCGAAA 540 ||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| Sbjct 519 AAGGTACGTCTAGAAAATAAGGCTGTGATACGTGATGGTCTAGTATGTTTGACTCCAAAA 578 Query 541 GAGGTGACTGTATTGGGCGGTTATGTGCAATCACTCACTGAAGAATGGCAGATGAAGAAA 600 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 579 GAGGTGACTGTCTTGGGCGGTTATGTGCAATCACTCACTGAAGAATGGCAGATGAAGAAA 638 Query 601 AAATATGCTAATTTGGCTCGATCTCAGGAAAGCAAAGCTGGTGTTGGCCCTCCTCCATTT 660 ||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 639 AAATACGCTAGTTTGGCTCGATCTCAGGAAAGCAAAGCTGGTGATGGCCCTCCTCCATTT 698 Query 661 GAGGAGTTGCAGATTCGAACAGGTTCCCATCACCGGGATTACAACAGGACGACTTTTAGG 720 ||||||||| ||||||||||||||||||||||||| |||||||||| |||||||| ||| Sbjct 699 GAGGAGTTGAAGATTCGAACAGGTTCCCATCACCGCGATTACAACAAGACGACTTCTAGA 758 Query 721 AACATTGTACCTACTGCTGCAGAAAGCTATGTAAAACACGCTGGTGTAGAAAGAGGTGAA 780 |||| |||||||| |||||||||||||| ||||||||| || |||| ||||| ||||||| Sbjct 759 AACAATGTACCTATTGCTGCAGAAAGCTCTGTAAAACATGCCGGTGGAGAAAAAGGTGAA 818 Query 781 AGTAGTGAAGTTGATGGGAACAAAAGAGGCACAGATAAGAATATACAGAGGAATCCTGCA 840 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 819 AGTAGTGAAGTTGATGGGAACAAAAGAGGCACAAATAAGAATATACAGAGGAATCCTGCA 878 Query 841 GATTCTGATCCAAAAATATCTGTCAAAGTCGAAAATCAGGAAAAGCCAAGCAGTTCTGAT 900 ||||||||||| |||||||||||| |||| |||||||||||||||| ||||||||| ||| Sbjct 879 GATTCTGATCCGAAAATATCTGTCGAAGTTGAAAATCAGGAAAAGCGAAGCAGTTCCGAT 938 Query 901 ACACGACCTAAACAAGTGGTGGAAGCTGTTCCTTTACAGAACCAAGCGGCTGCGCAGATA 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 939 ACACGACCTAAACAAGTGGTGGAAGCTGTTCCTTTACAGAACCAAGCGGCTGCGCAGATA 998 Query 961 CTTCTCGAGAAGATGAAACATTCAAGTTCAAATGACCAG-CAATACCaaggaagaagagg 1019 ||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||| Sbjct 999 CTTCTTGAGAAGATGAAACATTCTAGTTCAAATGAT-AGGCAATACCAAGGAAGAAGAGG 1057 Query 1020 tagaggtagaggtagaggtagaggtagagggagggggagagaagaagaagaCTCTGCAGT 1079 ||| || | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1058 TAG-GG--G---TAGAGGTAGAGGTAGAGGGAGGGGGAGAGAAGAAGAAGACTCTGCAGT 1111 Query 1080 ATTTACACTAGATGAGTGGGAAAAGAGGAATACTGGCAGGGGAGTTCTTCCAACAGCTGA 1139 |||||||||||||||||||||||||||||||||||| |||| | ||||||||||||| | Sbjct 1112 ATTTACACTAGATGAGTGGGAAAAGAGGAATACTGGTGGGGGGGCTCTTCCAACAGCTAA 1171 Query 1140 CAATCCGAGCGACACTACCCGCGATGAAGATCTTGCATGGCAGCTTCAGAATCAGTTTGA 1199 | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1172 CCATCCAAGCGACACTACCCGCGATGAAGATCTTGCATGGCAGCTTCAGAATCAGTTTGA 1231 Query 1200 TCTGGAAGAATCTTATGTGCAGGAGGTGCAC-GGAACCGGGGCAGCGGATATAAGAATGA 1258 ||||||||| ||||||| ||||||| ||| | ||| |||||||||||||||| ||||||| Sbjct 1232 TCTGGAAGACTCTTATGGGCAGGAGATGC-CTGGAGCCGGGGCAGCGGATATCAGAATGA 1290 Query 1259 ATATGTTTGATTACGGAAGACCAGATGATAACTTTGGTCATggaagaggaagaggaggaa 1318 |||||||||||||||||||| |||| |||||||| || |||||||| |||||||||||| Sbjct 1291 ATATGTTTGATTACGGAAGAACAGAAGATAACTTCGGCCATGGAAGGGGAAGAGGAGGAG 1350 Query 1319 gaggaggaagaggtagagggcgagggcataggcggggaagaggaCGTGTGTAGATTGTAA 1378 || ||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1351 GAAGAGGAAGGGGTAGAGGGCGAGGACATAGACGGGGAAGAGGACGTGTGTAGATTGTAA 1410 Query 1379 TGAAATCATCCAGGCTTGTGGT 1400 |||||||||||||||||||||| Sbjct 1411 TGAAATCATCCAGGCTTGTGGT 1432 Score = 305 bits (165), Expect = 7e-82 Identities = 217/240 (90%), Gaps = 12/240 (5%) Strand=Plus/Plus Query 1398 GGTGTGGCAGCTCTGATTCTGTACATG-GTGTTTTA-GG-G--T--G-A-TTCAGATTTT 1448 ||||||||||| |||| |||||||||| ||||||| || | | | | |||||||||| Sbjct 1549 GGTGTGGCAGCGCTGAATCTGTACATGTTTGTTTTAGGGTGATTCAGAATTTCAGATTTT 1608 Query 1449 CGTGAGAGGTTTTGAATTTGAACATAGAGGCTCTGCTAAGTCATTTATCTTTCTTTGTGG 1508 |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| | Sbjct 1609 CGTGAGAGGTTTTGAATTTGAACATAAAGG--CTGCTAAGTCATTTATCTTTCTTTGTTG 1666 Query 1509 CTATAGTAGTACTTTGCGAAAAGACGTTGAAGTTCACCAGTACCTTCCTCAACCACTCAT 1568 |||||||| | ||||||||||||| ||||||||||||||||| |||||||||| |||||| Sbjct 1667 CTATAGTAATTCTTTGCGAAAAGATGTTGAAGTTCACCAGTAGCTTCCTCAACAACTCAT 1726 Query 1569 CTGAAGTGAGACACTCTTAAA-TGAAGTTTACATTACAACAAAGTTCTATCTAAAACACC 1627 ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 1727 CTGAAGTGAGACACTCTTAAAATGAAGTTTACATTACAACAAAGTTATATCTAAAACACC 1786 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80371072545 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5