BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488891
Length=1627
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19950.1 | Symbols: | Domain of unknown function (DUF1767) ... 2109 0.0
> AT5G19950.1 | Symbols: | Domain of unknown function (DUF1767)
| chr5:6740777-6743773 REVERSE LENGTH=1789
Length=1789
Score = 2109 bits (1142), Expect = 0.0
Identities = 1317/1402 (94%), Gaps = 10/1402 (1%)
Strand=Plus/Plus
Query 1 CAATTGGTTTAGCGCGACAAGAGCATCGACGCAATGGAGGGAACATCAAGCTCCTCCGCC 60
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 39 CAATTGGTTTAGCGCGACAAGAGCATCAACGCAATGGTGGGAACATCAAGCTCCTCCGCC 98
Query 61 GCCGGCCACACCCACACCGTCGTGATAAATGCCCTAACTAGCCGGGGCTGGTGCTTCAGA 120
| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 99 GGCGACCACACCCACACCGTCGTGATAAATGCCCTAACTAGTCGGGGCTGGTGCTTCAGA 158
Query 121 GACGTCGAATACTTGAAATCTCTGGTCACTGATATCTCCTCCTTGATCGGCGGTGGTAAT 180
|||||||||||||||||||| ||||||||||| ||||| |||||||||||||| || |||
Sbjct 159 GACGTCGAATACTTGAAATCCCTGGTCACTGAAATCTCTTCCTTGATCGGCGGCGGCAAT 218
Query 181 CAAACAGGCGCGGTTGTGGAGTCAGTGGAGGCGGAGCTGCTTAACATGGATATTAAGTTA 240
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 AAAACAGGCGCCATCGTGGAGTCAGTGGAGGCGGAGCTGCTTAACATGGATATTAAGTTA 278
Query 241 ATCGGAGGTAAGTCCCTCCCAGACCCGACCGAGTTACGCAGGTGTTCTCATCTTCAAGGC 300
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 279 ATCGGAGGTAAATCCCTCCCGGACCCGACCGAGTTACGCAGGTGTTCTCATCTTCAAGGC 338
Query 301 CCCAAAGTTCTCCAGATAAGTTCTGTTAGGGATGTTACAAGAAGTAGCGCAGAGGAATTT 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 339 CCCAAAGTTCTCCAGATAAGTTATGTTAGGGATGTTACAAGAAGTAGCGCAGAGGAATTT 398
Query 361 TTGGGAAGTTCTACTGGTAAACGAGTGCTAAAATTCGCTCTGACTGATGGCAAGACCGAG 420
|||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 399 GTGGGAAGTTCCACTGGTAAACGAGTGCTAAAATTCGCTCTGACTGACGGGAAGACCGAA 458
Query 421 ATATCCGCGCTTGAGTACTCTCATATACCAACGATTAACAATGATGTAACCCCTGGTACT 480
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 459 ATATCCGCGCTTGAGTACTCTCATATACCAACGATTAACAATGATGTCACTCCTGGTACT 518
Query 481 AAGGTCCGTCTAGAAAATAAGGCTGTGATACGTGACGGTTTAGTATGTTTGACTCCGAAA 540
||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||| |||
Sbjct 519 AAGGTACGTCTAGAAAATAAGGCTGTGATACGTGATGGTCTAGTATGTTTGACTCCAAAA 578
Query 541 GAGGTGACTGTATTGGGCGGTTATGTGCAATCACTCACTGAAGAATGGCAGATGAAGAAA 600
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 GAGGTGACTGTCTTGGGCGGTTATGTGCAATCACTCACTGAAGAATGGCAGATGAAGAAA 638
Query 601 AAATATGCTAATTTGGCTCGATCTCAGGAAAGCAAAGCTGGTGTTGGCCCTCCTCCATTT 660
||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 639 AAATACGCTAGTTTGGCTCGATCTCAGGAAAGCAAAGCTGGTGATGGCCCTCCTCCATTT 698
Query 661 GAGGAGTTGCAGATTCGAACAGGTTCCCATCACCGGGATTACAACAGGACGACTTTTAGG 720
||||||||| ||||||||||||||||||||||||| |||||||||| |||||||| |||
Sbjct 699 GAGGAGTTGAAGATTCGAACAGGTTCCCATCACCGCGATTACAACAAGACGACTTCTAGA 758
Query 721 AACATTGTACCTACTGCTGCAGAAAGCTATGTAAAACACGCTGGTGTAGAAAGAGGTGAA 780
|||| |||||||| |||||||||||||| ||||||||| || |||| ||||| |||||||
Sbjct 759 AACAATGTACCTATTGCTGCAGAAAGCTCTGTAAAACATGCCGGTGGAGAAAAAGGTGAA 818
Query 781 AGTAGTGAAGTTGATGGGAACAAAAGAGGCACAGATAAGAATATACAGAGGAATCCTGCA 840
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 819 AGTAGTGAAGTTGATGGGAACAAAAGAGGCACAAATAAGAATATACAGAGGAATCCTGCA 878
Query 841 GATTCTGATCCAAAAATATCTGTCAAAGTCGAAAATCAGGAAAAGCCAAGCAGTTCTGAT 900
||||||||||| |||||||||||| |||| |||||||||||||||| ||||||||| |||
Sbjct 879 GATTCTGATCCGAAAATATCTGTCGAAGTTGAAAATCAGGAAAAGCGAAGCAGTTCCGAT 938
Query 901 ACACGACCTAAACAAGTGGTGGAAGCTGTTCCTTTACAGAACCAAGCGGCTGCGCAGATA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 ACACGACCTAAACAAGTGGTGGAAGCTGTTCCTTTACAGAACCAAGCGGCTGCGCAGATA 998
Query 961 CTTCTCGAGAAGATGAAACATTCAAGTTCAAATGACCAG-CAATACCaaggaagaagagg 1019
||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 999 CTTCTTGAGAAGATGAAACATTCTAGTTCAAATGAT-AGGCAATACCAAGGAAGAAGAGG 1057
Query 1020 tagaggtagaggtagaggtagaggtagagggagggggagagaagaagaagaCTCTGCAGT 1079
||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 TAG-GG--G---TAGAGGTAGAGGTAGAGGGAGGGGGAGAGAAGAAGAAGACTCTGCAGT 1111
Query 1080 ATTTACACTAGATGAGTGGGAAAAGAGGAATACTGGCAGGGGAGTTCTTCCAACAGCTGA 1139
|||||||||||||||||||||||||||||||||||| |||| | ||||||||||||| |
Sbjct 1112 ATTTACACTAGATGAGTGGGAAAAGAGGAATACTGGTGGGGGGGCTCTTCCAACAGCTAA 1171
Query 1140 CAATCCGAGCGACACTACCCGCGATGAAGATCTTGCATGGCAGCTTCAGAATCAGTTTGA 1199
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 CCATCCAAGCGACACTACCCGCGATGAAGATCTTGCATGGCAGCTTCAGAATCAGTTTGA 1231
Query 1200 TCTGGAAGAATCTTATGTGCAGGAGGTGCAC-GGAACCGGGGCAGCGGATATAAGAATGA 1258
||||||||| ||||||| ||||||| ||| | ||| |||||||||||||||| |||||||
Sbjct 1232 TCTGGAAGACTCTTATGGGCAGGAGATGC-CTGGAGCCGGGGCAGCGGATATCAGAATGA 1290
Query 1259 ATATGTTTGATTACGGAAGACCAGATGATAACTTTGGTCATggaagaggaagaggaggaa 1318
|||||||||||||||||||| |||| |||||||| || |||||||| ||||||||||||
Sbjct 1291 ATATGTTTGATTACGGAAGAACAGAAGATAACTTCGGCCATGGAAGGGGAAGAGGAGGAG 1350
Query 1319 gaggaggaagaggtagagggcgagggcataggcggggaagaggaCGTGTGTAGATTGTAA 1378
|| ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1351 GAAGAGGAAGGGGTAGAGGGCGAGGACATAGACGGGGAAGAGGACGTGTGTAGATTGTAA 1410
Query 1379 TGAAATCATCCAGGCTTGTGGT 1400
||||||||||||||||||||||
Sbjct 1411 TGAAATCATCCAGGCTTGTGGT 1432
Score = 305 bits (165), Expect = 7e-82
Identities = 217/240 (90%), Gaps = 12/240 (5%)
Strand=Plus/Plus
Query 1398 GGTGTGGCAGCTCTGATTCTGTACATG-GTGTTTTA-GG-G--T--G-A-TTCAGATTTT 1448
||||||||||| |||| |||||||||| ||||||| || | | | | ||||||||||
Sbjct 1549 GGTGTGGCAGCGCTGAATCTGTACATGTTTGTTTTAGGGTGATTCAGAATTTCAGATTTT 1608
Query 1449 CGTGAGAGGTTTTGAATTTGAACATAGAGGCTCTGCTAAGTCATTTATCTTTCTTTGTGG 1508
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
Sbjct 1609 CGTGAGAGGTTTTGAATTTGAACATAAAGG--CTGCTAAGTCATTTATCTTTCTTTGTTG 1666
Query 1509 CTATAGTAGTACTTTGCGAAAAGACGTTGAAGTTCACCAGTACCTTCCTCAACCACTCAT 1568
|||||||| | ||||||||||||| ||||||||||||||||| |||||||||| ||||||
Sbjct 1667 CTATAGTAATTCTTTGCGAAAAGATGTTGAAGTTCACCAGTAGCTTCCTCAACAACTCAT 1726
Query 1569 CTGAAGTGAGACACTCTTAAA-TGAAGTTTACATTACAACAAAGTTCTATCTAAAACACC 1627
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1727 CTGAAGTGAGACACTCTTAAAATGAAGTTTACATTACAACAAAGTTATATCTAAAACACC 1786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80371072545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5