BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488893
Length=1252
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1847 0.0
> AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6743926-6746339 FORWARD LENGTH=1323
Length=1323
Score = 1847 bits (1000), Expect = 0.0
Identities = 1167/1244 (94%), Gaps = 25/1244 (2%)
Strand=Plus/Plus
Query 26 TTCCTTGTTGAATTCCGACCAAAGT-G-T---GTCGTTATGACGATTGACGATGGTAACT 80
||||||||||||||||||||||||| | | | ||||||||||| |||||||||||||
Sbjct 67 TTCCTTGTTGAATTCCGACCAAAGTCGATAAAG-AGTTATGACGATGGACGATGGTAACT 125
Query 81 CCGTCTACGTCGGCGGCCTCCCTTACGACATCACCGAGGAGGCTGTCCGCCGTGTCTTCT 140
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 126 CCGTCTACGTCGGCGGCCTCCCTTACGACATCACCGAGGAGGCTGTCCGTCGCGTCTTCT 185
Query 141 CCATTTACGGCTCCGTCCTCACCGTTAAGATTGTCAATGACCGAAGTGTAAGAGGGAAAT 200
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 186 CCATTTACGGCTCCGTCCTCACCGTTAAGATTGTCAATGACCGGAGTGTAAGAGGGAAAT 245
Query 201 GCTATGGCTTTGTTACGTTTTCAAACCGTCGATCGGCTGATGATGCTATCGAAGATATGG 260
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 246 GCTATGGCTTTGTTACATTTTCGAACCGTCGATCGGCTGATGATGCTATCGAAGATATGG 305
Query 261 ATGGAAAAAGTATTGGTGGGCGTGCAGTGCGTGTGAATGATGTGACAACAAGAGGTGGAA 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 ATGGAAAAAGTATTGGTGGGCGTGCAGTGCGTGTGAATGATGTGACAACAAGAGGTGGAA 365
Query 321 GAATGAATCCAGGTCCCGGGCGGTTACAACCACACGGTGGATGGGGTAGAAGCCCCGATA 380
|||||||||||||||| ||||||||||||||||||||||| |||| |||||| || ||||
Sbjct 366 GAATGAATCCAGGTCCGGGGCGGTTACAACCACACGGTGGTTGGGATAGAAGTCCTGATA 425
Query 381 GGAGAAGTAATGGCAATTATGACAGGGATCGGTATAGTGATAGGTCCCGAGAACGGGATA 440
|||||||| |||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 426 GGAGAAGTGATGGTAATTATGAGAGGGATCGGTATAGTGATAGGTCTCGAGAACGGGATA 485
Query 441 GGTCTCAGGATAGGAGAAAAGATCATCGCTACACAGAGAAGGAAAGAGCTTATGAGCATT 500
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 486 GGTCTCAGGATAGGAGAAAAGATCATCGCTACATAGAGAAGGAAAGAGCTTATGAGCATT 545
Query 501 CACATGATTTTGAGAGGAGGAATGATCATGATTTGCTAGATAGAAATGGTTACAAGGAAA 560
|||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||
Sbjct 546 CACATGATTTTGAGAGGAGGAATGATCATGATATGGTAGATAGAAATGGTTATAAGGAAA 605
Query 561 GAGTTTTCGAAGGTGATGAAGGAGATTGGCGTGGGGATAGGTCTTTTGGGGATAATGGTA 620
|||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 606 GAGTTTTCGATGGTGATGAAGGAGATTGGCGTGGGGATAGGTCTTATGTGGATAATGGTA 665
Query 621 GGGGAATCAATGGGACCAGTGCTCACGAAGGAAGGAGCCAAGAAAGAAAGAGAGACGATA 680
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 666 GGGGAATAAATGGGACCAGTGCTCACGAAGGAAGGAGCCAAGAAACAAAGAGAGAAGATA 725
Query 681 GTACCATTCTCGATGGTGGGCGTGGCAGAGATCACTTCTCTAATTCAAGTGGAGATCAAC 740
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 726 GTACCATTCTTGATGGTGGACGTGGCAGAGATCACTTCTCTAATTCAAGTGGAGATCATC 785
Query 741 AGGTTAAAGAAGATCTAGAAGCGCTGATTAAGATGCGTGAGGCGCTTCAAGATGAGGTGG 800
|||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 786 AGGTGAAAGAAGATCTGGAAGCGCTGATTAAGATGCGTGAGGCGCTTCGAGATGAGGTGA 845
Query 801 TGGTGATGGAAGAGAGATTGGATG-AGAAAGAAGTAGTGTGCTCAGAGCTACaaaa-aaa 858
||||||||||||||||| |||| | | |||||||||||||||||||||||||| || |||
Sbjct 846 TGGTGATGGAAGAGAGACTGGAAGTA-AAAGAAGTAGTGTGCTCAGAGCTACAGAAGAAA 904
Query 859 GTCTAAGAGATTAGAAGATTTGTTGATCAATGAAAAGAAATTGGTTGCACAACGCCGAAA 918
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 905 -TCTAAGAGATTAGAAGATTTGTTGATCAATGAAAAGAAACTGGTTTCACAACGCCGAAA 963
Query 919 AGAATTGGCAAAGCTACATAAATCATTTTCAAGGGTTAGAGAGTGCACGGACAACCTGAA 978
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 964 AGAATTGGCAAAGCTACATAAATCATATTCAAGGGTTAGAGAGTGCACGGACAACCTGAA 1023
Query 979 AGACTGTGAACAAGAACTCCAGTCGCTTGTTAATTCAGCAGCTAGAGAAGGCGTGGCAGG 1038
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1024 AGACTGTGAACAAGAACTCCAGTTGCTTGTTAATTCAGCAGCTAGAGAAGGCGTGGCAGG 1083
Query 1039 TGCTGATGAAGGACTGGGACACGGGTATGCGTAACACGGTCACCCGCATTTATGATCTGT 1098
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1084 TGCTGATGAAGGATTGGGACACGGGTATCCGTAACACGGTCACCCGCATGTATGATCTGT 1143
Query 1099 TCTGTCTAAAGTGTAGCTTTGATATGCCGTCTCTTTGTGACTT-CACTGAGttttttttC 1157
| |||||||||||||||||||||||| | |||||||||||||| | | |||||||||| |
Sbjct 1144 TTTGTCTAAAGTGTAGCTTTGATATGTCTTCTCTTTGTGACTTTC-C-GAGTTTTTTT-C 1200
Query 1158 AAGTCGAGCTACACGAATTTGGTACATATCTGCTTATGTTTTAGCAAATATGTATTCATT 1217
||||||||||||| |||||||||||||| | ||| ||||| |||| ||||||||||||
Sbjct 1201 TAGTCGAGCTACACTAATTTGGTACATATTTACTT--GTTTTGGCAAGTATGTATTCATT 1258
Query 1218 --AT--G---T--ATTATTATCATACGAACATGAACTAAATAAT 1252
|| | | |||||||||||||||||||||||||||||||
Sbjct 1259 TCATTCGGGATGTATTATTATCATACGAACATGAACTAAATAAT 1302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61545868170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5