BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488893 Length=1252 Score E Sequences producing significant alignments: (Bits) Value AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1847 0.0 > AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:6743926-6746339 FORWARD LENGTH=1323 Length=1323 Score = 1847 bits (1000), Expect = 0.0 Identities = 1167/1244 (94%), Gaps = 25/1244 (2%) Strand=Plus/Plus Query 26 TTCCTTGTTGAATTCCGACCAAAGT-G-T---GTCGTTATGACGATTGACGATGGTAACT 80 ||||||||||||||||||||||||| | | | ||||||||||| ||||||||||||| Sbjct 67 TTCCTTGTTGAATTCCGACCAAAGTCGATAAAG-AGTTATGACGATGGACGATGGTAACT 125 Query 81 CCGTCTACGTCGGCGGCCTCCCTTACGACATCACCGAGGAGGCTGTCCGCCGTGTCTTCT 140 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 126 CCGTCTACGTCGGCGGCCTCCCTTACGACATCACCGAGGAGGCTGTCCGTCGCGTCTTCT 185 Query 141 CCATTTACGGCTCCGTCCTCACCGTTAAGATTGTCAATGACCGAAGTGTAAGAGGGAAAT 200 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 186 CCATTTACGGCTCCGTCCTCACCGTTAAGATTGTCAATGACCGGAGTGTAAGAGGGAAAT 245 Query 201 GCTATGGCTTTGTTACGTTTTCAAACCGTCGATCGGCTGATGATGCTATCGAAGATATGG 260 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 246 GCTATGGCTTTGTTACATTTTCGAACCGTCGATCGGCTGATGATGCTATCGAAGATATGG 305 Query 261 ATGGAAAAAGTATTGGTGGGCGTGCAGTGCGTGTGAATGATGTGACAACAAGAGGTGGAA 320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 306 ATGGAAAAAGTATTGGTGGGCGTGCAGTGCGTGTGAATGATGTGACAACAAGAGGTGGAA 365 Query 321 GAATGAATCCAGGTCCCGGGCGGTTACAACCACACGGTGGATGGGGTAGAAGCCCCGATA 380 |||||||||||||||| ||||||||||||||||||||||| |||| |||||| || |||| Sbjct 366 GAATGAATCCAGGTCCGGGGCGGTTACAACCACACGGTGGTTGGGATAGAAGTCCTGATA 425 Query 381 GGAGAAGTAATGGCAATTATGACAGGGATCGGTATAGTGATAGGTCCCGAGAACGGGATA 440 |||||||| |||| |||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 426 GGAGAAGTGATGGTAATTATGAGAGGGATCGGTATAGTGATAGGTCTCGAGAACGGGATA 485 Query 441 GGTCTCAGGATAGGAGAAAAGATCATCGCTACACAGAGAAGGAAAGAGCTTATGAGCATT 500 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 486 GGTCTCAGGATAGGAGAAAAGATCATCGCTACATAGAGAAGGAAAGAGCTTATGAGCATT 545 Query 501 CACATGATTTTGAGAGGAGGAATGATCATGATTTGCTAGATAGAAATGGTTACAAGGAAA 560 |||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||| Sbjct 546 CACATGATTTTGAGAGGAGGAATGATCATGATATGGTAGATAGAAATGGTTATAAGGAAA 605 Query 561 GAGTTTTCGAAGGTGATGAAGGAGATTGGCGTGGGGATAGGTCTTTTGGGGATAATGGTA 620 |||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 606 GAGTTTTCGATGGTGATGAAGGAGATTGGCGTGGGGATAGGTCTTATGTGGATAATGGTA 665 Query 621 GGGGAATCAATGGGACCAGTGCTCACGAAGGAAGGAGCCAAGAAAGAAAGAGAGACGATA 680 ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 666 GGGGAATAAATGGGACCAGTGCTCACGAAGGAAGGAGCCAAGAAACAAAGAGAGAAGATA 725 Query 681 GTACCATTCTCGATGGTGGGCGTGGCAGAGATCACTTCTCTAATTCAAGTGGAGATCAAC 740 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 726 GTACCATTCTTGATGGTGGACGTGGCAGAGATCACTTCTCTAATTCAAGTGGAGATCATC 785 Query 741 AGGTTAAAGAAGATCTAGAAGCGCTGATTAAGATGCGTGAGGCGCTTCAAGATGAGGTGG 800 |||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 786 AGGTGAAAGAAGATCTGGAAGCGCTGATTAAGATGCGTGAGGCGCTTCGAGATGAGGTGA 845 Query 801 TGGTGATGGAAGAGAGATTGGATG-AGAAAGAAGTAGTGTGCTCAGAGCTACaaaa-aaa 858 ||||||||||||||||| |||| | | |||||||||||||||||||||||||| || ||| Sbjct 846 TGGTGATGGAAGAGAGACTGGAAGTA-AAAGAAGTAGTGTGCTCAGAGCTACAGAAGAAA 904 Query 859 GTCTAAGAGATTAGAAGATTTGTTGATCAATGAAAAGAAATTGGTTGCACAACGCCGAAA 918 ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 905 -TCTAAGAGATTAGAAGATTTGTTGATCAATGAAAAGAAACTGGTTTCACAACGCCGAAA 963 Query 919 AGAATTGGCAAAGCTACATAAATCATTTTCAAGGGTTAGAGAGTGCACGGACAACCTGAA 978 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 964 AGAATTGGCAAAGCTACATAAATCATATTCAAGGGTTAGAGAGTGCACGGACAACCTGAA 1023 Query 979 AGACTGTGAACAAGAACTCCAGTCGCTTGTTAATTCAGCAGCTAGAGAAGGCGTGGCAGG 1038 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1024 AGACTGTGAACAAGAACTCCAGTTGCTTGTTAATTCAGCAGCTAGAGAAGGCGTGGCAGG 1083 Query 1039 TGCTGATGAAGGACTGGGACACGGGTATGCGTAACACGGTCACCCGCATTTATGATCTGT 1098 ||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 1084 TGCTGATGAAGGATTGGGACACGGGTATCCGTAACACGGTCACCCGCATGTATGATCTGT 1143 Query 1099 TCTGTCTAAAGTGTAGCTTTGATATGCCGTCTCTTTGTGACTT-CACTGAGttttttttC 1157 | |||||||||||||||||||||||| | |||||||||||||| | | |||||||||| | Sbjct 1144 TTTGTCTAAAGTGTAGCTTTGATATGTCTTCTCTTTGTGACTTTC-C-GAGTTTTTTT-C 1200 Query 1158 AAGTCGAGCTACACGAATTTGGTACATATCTGCTTATGTTTTAGCAAATATGTATTCATT 1217 ||||||||||||| |||||||||||||| | ||| ||||| |||| |||||||||||| Sbjct 1201 TAGTCGAGCTACACTAATTTGGTACATATTTACTT--GTTTTGGCAAGTATGTATTCATT 1258 Query 1218 --AT--G---T--ATTATTATCATACGAACATGAACTAAATAAT 1252 || | | ||||||||||||||||||||||||||||||| Sbjct 1259 TCATTCGGGATGTATTATTATCATACGAACATGAACTAAATAAT 1302 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61545868170 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5