BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488895
Length=1199
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19980.1 | Symbols: GONST4 | golgi nucleotide sugar transpor... 1674 0.0
> AT5G19980.1 | Symbols: GONST4 | golgi nucleotide sugar transporter
4 | chr5:6749705-6751070 REVERSE LENGTH=1366
Length=1366
Score = 1674 bits (906), Expect = 0.0
Identities = 1040/1104 (94%), Gaps = 12/1104 (1%)
Strand=Plus/Plus
Query 103 AAACAATGTCGTCCTCTCGATTCGATTCAAGCAAACAATTAACAACAAGCAGTCTCGTAA 162
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 134 AAACAATGTCGTCCTCTCGATTCGATTCAAACAAACAATTAACAACAAGCAGTCTCGTAA 193
Query 163 TCGGGTACGCACTCTGCTCAAGCCTCCTCGCCGTCATCAACAAATTAGCAATCACATACT 222
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 194 TCGGCTACGCACTCTGCTCAAGCCTCCTCGCCGTAATCAACAAATTAGCAATCACATACT 253
Query 223 TCAACTACCCAGGCCTTCTCACAGCTCTCCAATACCTAACCTGCACCGTCGCCGTCTGGC 282
||||||||||||| || ||||||||||| |||||||||||||||||||||||||||| |
Sbjct 254 TCAACTACCCAGGTCTCCTCACAGCTCTTCAATACCTAACCTGCACCGTCGCCGTCTATC 313
Query 283 TTCTCGGCAAATCAGGGCTT-ATCAATCACGATCCATTCACATGGGACACAGCTAAGAAA 341
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 314 TTCTCGGCAAATCAGGG-TTAATCAATCACGATCCATTCACATGGGACACTGCTAAGAAA 372
Query 342 TTCCTCCCTGCAGCTATCGTCTTCTACCTCGCCATCTTCACAAACACAAACCTCCTCCGT 401
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 373 TTTCTCCCTGCAGCTATCGTCTTCTACCTCGCTATCTTCACAAACACAAACCTCCTCCGT 432
Query 402 CACGCTAATGTCGATACTTTCATTGTCTTCCGATCTCTCACGCCGCTCTTAGTCGCGATC 461
||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 433 CACGCTAATGTCGATACTTTCATCGTCTTCCGATCTCTAACACCGCTCTTAGTCGCGATC 492
Query 462 GCTGACACTGTGTTTCGTAGTCAGCCTTTACCTTCAAGGCTTACGTTTTTGTCCT-TATT 520
||||| ||||||||||||||||||||||||||||| || ||||||||||||| || | |
Sbjct 493 GCTGATACTGTGTTTCGTAGTCAGCCTTTACCTTCGAGACTTACGTTTTTGT-CTCTCGT 551
Query 521 CGTCATCCTCGCTGGTGCTGTTGGGTATGTTGCAACTGACTCGTCTTTTACTCTCACGGC 580
||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 552 CGTTATCCTCGCTGGAGCTGTTGGGTATGTTGCAACTGACTCGTCTTTTACTCTAACGGC 611
Query 581 TTATTCCTGGGCTTTGGCTTATCTTGTTACCATTACTACTGAAATGGTTTACATTAAGCA 640
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 TTATTCATGGGCTTTGGCTTATCTTGTTACCATTACTACTGAAATGGTTTACATTAAGCA 671
Query 641 TATGGTGTC-AAGTATTAAATTGAACATTTGGGGATTGGTTCTCTACAATAATCT-CTTG 698
|||||| || || |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 672 TATGGTCTCTAA-TATTAAATTGAACATTTGGGGATTGGTTCTCTACAATAATCTAC-TG 729
Query 699 TCTCTGATGATAGCACCGATATTCTGGTTTCTTACTGGAGAATACACCGAGGTTTTCGCT 758
|||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||
Sbjct 730 TCTCTGATGATAGCACCGGTGTTCTGGTTTCTTACTGGAGAATTCACCGAGGTTTTCGCG 789
Query 759 GCGTTGGGTGAGAATCGAGGGAATTTGTTTGAACCTTATGCGTTTTCCGCTGTGGCTGCG 818
|||||| |||||||| |||||||||||||||| |||||||||||||| |||||||||||
Sbjct 790 GCGTTGAGTGAGAATAGAGGGAATTTGTTTGAGCCTTATGCGTTTTCTTCTGTGGCTGCG 849
Query 819 TCGTGTGTGTTTGGTTTCCTTATCAGCTACTTTGGATTTGCTGCTAGGAATGCTATCTCT 878
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 850 TCGTGTGTGTTTGGTTTCCTTATCAGTTACTTTGGATTTGCTGCTAGGAATGCTATCTCT 909
Query 879 GCTACTGCTTTTACAGTCACTGGTGTTGTTAACAAGTTCTTGACTGTTGTCATCAATGTT 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 GCTACTGCTTTTACAGTCACTGGTGTTGTTAACAAGTTCTTGACTGTTGTCATCAATGTT 969
Query 939 TTGATTTGGGATAAGCATGCCACTCCTGTTGGTTTGGTTTGTCTACTGTTTACTATCTGT 998
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 970 TTGATTTGGGATAAGCATGCCACTCCTGTTGGTTTGGTTTGTCTTCTTTTTACTATCTGT 1029
Query 999 GGAGGTGTTGGTTATCAGCAGTCTGTCAAATTGGATAAACCCATCGAGAAGGTCAGCGAG 1058
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1030 GGAGGTGTTGGTTATCAGCAGAGTGTCAAATTGGATAAACCCATTGAGAAGGTCAGCGAG 1089
Query 1059 AAAGACAGCGAGAAGGGCGAGGAAGATGAAGAGTTGTCGCCGTTGAATACAGGAAAACTA 1118
||||| ||||||||||| ||||||||||| |||||| ||| |||| | | || ||||||
Sbjct 1090 AAAGATAGCGAGAAGGGAGAGGAAGATGAGGAGTTGACGCAGTTGGTTCCGGGGAAACTA 1149
Query 1119 GCTTCTGTTGTATAAGAGCAAGTGTCATTGTTTTGCAGCCTG--TTT-CAGGTGTGTAGC 1175
||||||||||||| |||| ||||||||||||||||||||||| ||| |||||||||| |
Sbjct 1150 GCTTCTGTTGTATGAGAG-AAGTGTCATTGTTTTGCAGCCTGCCTTTTCAGGTGTGTAAC 1208
Query 1176 ATTTTGAATATCTTAGCCTTTTTT 1199
|||||||||||||||||||||||
Sbjct 1209 CTTTTGAATATCTTAGCCTTTTTT 1232
Score = 154 bits (83), Expect = 2e-36
Identities = 100/107 (93%), Gaps = 5/107 (5%)
Strand=Plus/Plus
Query 1 GTACGATAAGACACTGATGAGAGAAGTCGTCGCCTTCCTCTAATTAGTCTCTGAAT---C 57
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1 GTACGATAAGACACTGACGAGAGAAGTCGTCGCCTTCCTCTAATTAGTCTCTGAATAATC 60
Query 58 CGATCCAGATCCCAAATCCTCT-T-CTTCATCTTCTCCGATCTGGAT 102
|||||||||||||||||||||| | |||||||||| |||||||||||
Sbjct 61 CGATCCAGATCCCAAATCCTCTCTTCTTCATCTTCACCGATCTGGAT 107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58885239285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5