BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488897
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20000.1 | Symbols: | AAA-type ATPase family protein | chr5... 2427 0.0
AT5G19990.1 | Symbols: RPT6A, ATSUG1 | regulatory particle trip... 1995 0.0
> AT5G20000.1 | Symbols: | AAA-type ATPase family protein | chr5:6756633-6759750
FORWARD LENGTH=1742
Length=1742
Score = 2427 bits (1314), Expect = 0.0
Identities = 1579/1701 (93%), Gaps = 41/1701 (2%)
Strand=Plus/Plus
Query 1 ATAACAAAACCAAACGGCTGATGAATATTCGGTTAATTTTGGGTCGTTTCGGTTAtt--t 58
||||||||||||| ||| | || | | |||||| ||||||||||| ||| ||| ||
Sbjct 35 ATAACAAAACCAAGCGGTTTAT--AGACTCGGTTTATTTTGGGTCG-TTC-GTT-TTCCA 89
Query 59 tttttttCCGTCA-AAGAA-ATAAAAT--TAAATTGAACTT----aaaaaaaaaaGATGT 110
|||| || | ||| || || | ||||| |||||||||||| |||||||||||||||
Sbjct 90 TTTTATT-C-TCACAA-AATAAAAAATAGTAAATTGAACTTACAAAAAAAAAAAAGATGT 146
Query 111 CTTGTTGGATAATCCAAGGTTCTGTTCTATATAGTAGGGTTTATTTGGTAATGATCTTGG 170
||||||||||||||||||||||| ||||||||| | || || |||| | |||||||| |
Sbjct 147 CTTGTTGGATAATCCAAGGTTCTTTTCTATATA--AAGG-TTCTTTGCTCATGATCTTAG 203
Query 171 TCTCTGTGATCTATCTTTGAATCTCAAAAGCATACTAGAGAGAGAGATCTGTTTCGATAA 230
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 204 TCCCTGTGATCTATCTTTGAATCTCAAAAGCATACT--TGAGAGAGATCTGTTTCGATAA 261
Query 231 TTTGCTGCAATCACCGTGTTAATGGCGGCCGTAGGAGTGGAGACGAGGCCTCCTGTGACA 290
|||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 262 TTTGCTTCAATCACCGTGTTAATGGCGGCCGTAGGAGTGGAGGCGAGACCTCCTGTGACA 321
Query 291 ACGATGGAGGAAACCTGCAACGTCAAGGGAGCGGCGGCGAAACAAGGGGAAGGGCTTAAG 350
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 322 GCGATGGAGGAAACCTGCAACGTTAAGGGAGCGGCGGCGAAACAAGGAGAAGGGCTTAA- 380
Query 351 C-AGTACTATCTCCAGCATATCCATGAGCTCCAGCGTCTGCTCCGAC-AAAAGACGAACA 408
| ||||||| ||||||||| || ||||||||||||| |||| || | ||||| || | |
Sbjct 381 CAAGTACTACCTCCAGCATCTCGATGAGCTCCAGCGCCTGCAACG-CGAAAAGTCGTATA 439
Query 409 ACCTTAATCGCCTTGAAGCTCAGAGGAATGAACTCAATTCTAGAGTACGAATGCTCAGAG 468
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 440 ACCTTAATCGTCTTGAAGCTCAGAGGAATGAACTCAATTCTCGAGTACGAATGCTCAGAG 499
Query 469 AAGAGTTGCAACTGCTTCAAGAACCTGGGTCCTATGTGGGCGAAGTGGTAAAAGTGATGG 528
||||||| || || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 500 AAGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATGTGGGTGAAGTGGTAAAAGTGATGG 559
Query 529 GAAAAAACAAGGTCTTGGTTAAGGTTCATCCAGAGGGGAAATATGTTGTCGATATTGACA 588
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 560 GAAAAAACAAGGTCTTGGTTAAGGTTCATCCAGAGGGGAAGTATGTTGTCGATATTGACA 619
Query 589 AAAGTATAGACATAACGAAACTCACTCCATCAACGAGAGTTGCTCTCCGTAATGATAGTT 648
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 620 AAAGTATAGACATAACGAAACTCACTCCATCAACGAGAGTTGCTCTCCGTAATGATAGCT 679
Query 649 ATGTTCTCCACCTGGTTCTGCCAAGTAAGGTTGATCCCTTGGTTAACCTTATGAAAGTTG 708
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 680 ATGTTCTCCACCTGGTTCTGCCAAGTAAAGTAGATCCCTTGGTTAACCTTATGAAAGTTG 739
Query 709 AGAAGGTTCCAGACTCCACATATGACATGATTGGTGGTCTTGACCAGCAAATCAAGGAAA 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 AGAAGGTTCCAGACTCCACATATGACATGATTGGTGGTCTTGACCAGCAAATCAAGGAAA 799
Query 769 TAAAGGAGGTCATTGAGCTGCCAATCAAGCATCCTGAATTGTTTGAGTCTCTTGGAATTG 828
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 TAAAGGAGGTCATTGAACTGCCAATCAAGCATCCTGAATTGTTTGAGTCTCTTGGAATTG 859
Query 829 CACAGCCAAAGGGTGTGTTGTTATACGGTCCACCTGGAACTGGGAAGACACTACTGGCTC 888
| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 860 CGCAGCCAAAGGGTGTGTTGTTGTACGGTCCACCTGGAACTGGGAAGACACTATTGGCTC 919
Query 889 GGGCTGTGGCACATCACACAGACTGTACTTTCATCAGAGTTTCTGGATCCGAGCTGGTAC 948
||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |
Sbjct 920 GGGCTGTGGCACATCACACTGACTGTACTTTCATCAGAGTTTCTGGTTCTGAGCTGGTCC 979
Query 949 AGAAATACATTGGAGAAGGTTCTAGAATGGTCAGAGAACTTTTTGTGATGGCAAGGGAGC 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 AGAAATACATTGGAGAAGGTTCTAGAATGGTCAGAGAACTTTTTGTGATGGCAAGGGAGC 1039
Query 1009 ATGCACCATCAATCATCTTCATGGATGAAATCGATAGTATCGGGTCTGCTCGTATGGAAT 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 ATGCACCATCAATCATCTTCATGGATGAAATCGATAGTATCGGGTCTGCTCGTATGGAAT 1099
Query 1069 CTGGAAGTGGAAATGGTGACAGTGAGGTTCAAAGGACTATGCTTGAGCTTCTCAATCAAC 1128
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1100 CTGGTAGTGGAAATGGTGACAGTGAGGTGCAAAGGACTATGCTTGAGCTTCTCAATCAAC 1159
Query 1129 TTGACGGATTCGAAGCGTCAAACAAAATCAAGGTTCTGATGGCGACAAATCGTATTGATA 1188
||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1160 TTGACGGATTCGAGGCGTCAAACAAAATCAAGGTTTTGATGGCTACAAATCGTATTGATA 1219
Query 1189 TTCTGGATCAAGCTCTTCTTAGGCCTGGAAGGATTGATAGGAAAATTGAATTCCCTAATC 1248
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1220 TTCTGGATCAAGCTCTTCTCCGGCCTGGAAGGATTGATAGGAAAATTGAATTTCCTAATC 1279
Query 1249 CTAATGAAGAGTCACGTTTTGATATCTTGAAGATACACTCGAGGAAAATGAATTTGATGC 1308
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1280 CTAATGAAGAGTCACGTTTTGATATCTTGAAGATACACTCAAGGAAAATGAATTTGATGC 1339
Query 1309 GTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGGTGCTTCAGGTGCTGAGCTGA 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 GTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGGTGCTTCAGGTGCTGAGCTGA 1399
Query 1369 AGGCTGTGTGCACGGAGGCGGGCATGTTTGCGCTGCGGGAGAGGAGAGTTCACGTGACAC 1428
||||||| ||||||||||||||||||||||| || || ||||||||||| || ||||| |
Sbjct 1400 AGGCTGTATGCACGGAGGCGGGCATGTTTGCACTTCGTGAGAGGAGAGTACATGTGACTC 1459
Query 1429 AAGAAGACTTTGAGATGGCGGTGGCCAAGGTAATGAAGAAAGACACAGAGAAGAACATGT 1488
| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1460 AGGAAGACTTTGAGATGGCTGTGGCGAAGGTAATGAAGAAAGACACAGAGAAGAACATGT 1519
Query 1489 CTCTGCGTAAGCTCTGGAAGTAGGAATCTCAGAG-CAAAGGATTGAATT-C-ATTTAGGT 1545
||||||||||||||||||||||||||| |||||| || || ||| |||| | ||| | |
Sbjct 1520 CTCTGCGTAAGCTCTGGAAGTAGGAATTTCAGAGTCACAG-ATT-AATTTCGATT-A--T 1574
Query 1546 TTCCT-T-TACTGTCTGTGGTTCTTTCTGAAACCTTTTCGGTTGGCGCTTTAAGCTCTTC 1603
||| | | ||||||||||||||||||||||||||||||||| | |||||||||||| |||
Sbjct 1575 TTCTTCTCTACTGTCTGTGGTTCTTTCTGAAACCTTTTCGGCTAGCGCTTTAAGCTTTTC 1634
Query 1604 GAAACAAAGTTTGTACACTAGTTT--AT--ATTCAAATGGTGGTTCAGCATAACAGCTTC 1659
|||||| |||||||||||||||| || ||||||||||| ||||||||||||| ||||
Sbjct 1635 TAAACAATGTTTGTACACTAGTTTCTATTCATTCAAATGGTTGTTCAGCATAACATCTTC 1694
Query 1660 CATTTAACCAAGCTTACATTT 1680
||| ||||||||||||||||
Sbjct 1695 GATTCAACCAAGCTTACATTT 1715
> AT5G19990.1 | Symbols: RPT6A, ATSUG1 | regulatory particle triple-A
ATPase 6A | chr5:6752006-6755080 FORWARD LENGTH=1560
Length=1560
Score = 1995 bits (1080), Expect = 0.0
Identities = 1234/1310 (94%), Gaps = 3/1310 (0%)
Strand=Plus/Plus
Query 211 AGAGAGATCTGT-TTCGATAATTTGCTGCAATCACCGTGTTAATGGCGGCCGTAGGAGTG 269
||||| ||||| |||||||||||| | ||||||| | | ||||||||||||||||||
Sbjct 97 AGAGATCTCTGTCTTCGATAATTTGTTTCAATCACTGAGAAAATGGCGGCCGTAGGAGTA 156
Query 270 GAGACGAGGCCTCCTGTGACAACGATGGAGGAAACCTGCAACGTCAAGGGAGCGGCGGCG 329
|| |||||| ||||| |||| |||||||||||||||| ||||| || ||||||||||||
Sbjct 157 GATTCGAGGCGTCCTGAGACAGCGATGGAGGAAACCTGTAACGTGAAAGGAGCGGCGGCG 216
Query 330 AAACAAGGGGAAGGGCTTAAGCAGTACTATCTCCAGCATATCCATGAGCTCCAGCGTCTG 389
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 217 AAACAAGGGGAAGGGCTTAAGCAGTACTATCTCCAGCACATCCATGAGCTCCAGCGCCAG 276
Query 390 CTCCGACAAAAGACGAACAACCTTAATCGCCTTGAAGCTCAGAGGAATGAACTCAATTCT 449
|| ||||| ||||| || ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 277 CTTCGACAGAAGACTAATAACCTCAATCGCCTTGAAGCTCAAAGGAATGAACTCAATTCT 336
Query 450 AGAGT-ACGAATGCTCAGAGAAGAGTTGCAACTGCTTCAAGAACCTGGGTCCTATGTGGG 508
|||| | ||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 337 CGAGTGA-GAATGCTCAGAGAAGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATGTGGG 395
Query 509 CGAAGTGGTAAAAGTGATGGGAAAAAACAAGGTCTTGGTTAAGGTTCATCCAGAGGGGAA 568
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 396 AGAAGTGGTAAAAGTTATGGGAAAGAACAAGGTCTTGGTTAAGGTTCATCCAGAGGGGAA 455
Query 569 ATATGTTGTCGATATTGACAAAAGTATAGACATAACGAAACTCACTCCATCAACGAGAGT 628
|||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 456 GTATGTTGTTGATATTGACAAAAGTATAGACATTACGAAAATCACTCCATCAACGAGAGT 515
Query 629 TGCTCTCCGTAATGATAGTTATGTTCTCCACCTGGTTCTGCCAAGTAAGGTTGATCCCTT 688
|||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 516 TGCTCTTCGTAATGATAGCTATGTTCTCCACCTGGTTCTGCCAAGTAAAGTAGATCCCTT 575
Query 689 GGTTAACCTTATGAAAGTTGAGAAGGTTCCAGACTCCACATATGACATGATTGGTGGTCT 748
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 576 GGTTAACCTTATGAAAGTTGAGAAGGTTCCAGACTCCACCTATGACATGATTGGTGGTCT 635
Query 749 TGACCAGCAAATCAAGGAAATAAAGGAGGTCATTGAGCTGCCAATCAAGCATCCTGAATT 808
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 TGACCAGCAGATTAAGGAAATAAAGGAGGTCATTGAGCTGCCAATCAAGCATCCTGAATT 695
Query 809 GTTTGAGTCTCTTGGAATTGCACAGCCAAAGGGTGTGTTGTTATACGGTCCACCTGGAAC 868
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 696 GTTTGAGTCTCTTGGAATTGCGCAGCCAAAGGGTGTGTTGTTATACGGTCCACCTGGAAC 755
Query 869 TGGGAAGACACTACTGGCTCGGGCTGTGGCACATCACACAGACTGTACTTTCATCAGAGT 928
||||||||||||| ||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 756 TGGGAAGACACTATTGGCTCGGGCTGTTGCACATCACACTGACTGTACTTTCATAAGAGT 815
Query 929 TTCTGGATCCGAGCTGGTACAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGAGAACT 988
|||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 816 TTCTGGTTCCGAGCTTGTCCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGAGAACT 875
Query 989 TTTTGTGATGGCAAGGGAGCATGCACCATCAATCATCTTCATGGATGAAATCGATAGTAT 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 TTTTGTGATGGCAAGGGAGCATGCACCATCAATCATCTTCATGGATGAAATCGATAGTAT 935
Query 1049 CGGGTCTGCTCGTATGGAATCTGGAAGTGGAAATGGTGACAGTGAGGTTCAAAGGACTAT 1108
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||
Sbjct 936 TGGGTCTGCTCGTATGGAATCTGGAAGTGGAAATGGTGACAGTGAGGTGCAACGGACCAT 995
Query 1109 GCTTGAGCTTCTCAATCAACTTGACGGATTCGAAGCGTCAAACAAAATCAAGGTTCTGAT 1168
||| ||||||||||||||||||||||| || |||||||||||||||||||||||| ||||
Sbjct 996 GCTCGAGCTTCTCAATCAACTTGACGGTTTTGAAGCGTCAAACAAAATCAAGGTTTTGAT 1055
Query 1169 GGCGACAAATCGTATTGATATTCTGGATCAAGCTCTTCTTAGGCCTGGAAGGATTGATAG 1228
||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1056 GGCTACAAATCGTATTGATATTCTGGATCAAGCTCTTCTCAGGCCTGGAAGAATTGATAG 1115
Query 1229 GAAAATTGAATTCCCTAATCCTAATGAAGAGTCACGTTTTGATATCTTGAAGATACACTC 1288
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1116 GAAAATTGAATTTCCTAATCCTAATGAAGAGTCACGTTTTGACATCTTGAAGATTCACTC 1175
Query 1289 GAGGAAAATGAATTTGATGCGTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGG 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 GAGGAAAATGAATTTGATGCGTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGG 1235
Query 1349 TGCTTCAGGTGCTGAGCTGAAGGCTGTGTGCACGGAGGCGGGCATGTTTGCGCTGCGGGA 1408
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 1236 CGCTTCAGGTGCTGAGCTGAAGGCTGTGTGCACGGAGGCGGGAATGTTTGCTCTGCGTGA 1295
Query 1409 GAGGAGAGTTCACGTGACACAAGAAGACTTTGAGATGGCGGTGGCCAAGGTAATGAAGAA 1468
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 GAGGAGAGTACACGTGACACAAGAAGACTTTGAGATGGCGGTGGCCAAGGTAATGAAGAA 1355
Query 1469 AGACACAGAGAAGAACATGTCTCTGCGTAAGCTCTGGAAGTAGGAATCTC 1518
|||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1356 AGACACGGAGAAGAACATGTCTCTGCGTAAGCTGTGGAAGTAGGAATCTC 1405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83031701430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5