BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488900
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20030.1 | Symbols: | Plant Tudor-like RNA-binding protein ... 1568 0.0
> AT5G20030.1 | Symbols: | Plant Tudor-like RNA-binding protein
| chr5:6764727-6766669 REVERSE LENGTH=1368
Length=1368
Score = 1568 bits (849), Expect = 0.0
Identities = 1045/1138 (92%), Gaps = 19/1138 (2%)
Strand=Plus/Plus
Query 1 CTTTTGATCCATGTTTGGTTGCCCAGAAA-ATCAAAG-AGGaaaaacaaaaaaaCAAAGC 58
||||||||||| ||||||||||||||||| ||||||| | ||||||||| |
Sbjct 1 CTTTTGATCCAAGTTTGGTTGCCCAGAAATATCAAAGAAAAAAAAACAAAGCTTTGTTGT 60
Query 59 TT-T-GTAGTAGAATCATTCATGGCTTTCTTTGCGTGTTAAACATTCACTAACCT-AAAA 115
|| | | |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 TTCTGGCAGTAGAATCATTCATGGCTTTCTTTGCGTGTTAAACATTCACTAACCTAAAAA 120
Query 116 CTTCGTATTTTTG-AAGCAGCAATCATGAGATTCAAGAAGGGAACTAAAGTCGAAGTGTT 174
| | | || | ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 C-T-AAAACTTCGTTTTCAGCAATCATGAGATTCAACAAGGGAACTAAAGTCGAAGTGTT 178
Query 175 GAGCAAATCATCGGTTCCATCTGGTGCCTGGCGGTCTGCAGAGATCATATCGGGAAATGG 234
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 179 GAGCAAATCATCGGTTCCATCTGGCGCCTGGCGGTCTGCAGAGATCATATCAGGAAATGG 238
Query 235 GCATTATTACACTGTCATGTATGATCATGATGGTGGTACGGAGAGGGTACCGAGGAAGAG 294
|||||| ||||||||||||||||||||| ||| |||||| ||||||||||||||||||||
Sbjct 239 GCATTACTACACTGTCATGTATGATCATAATGATGGTACAGAGAGGGTACCGAGGAAGAG 298
Query 295 TATGAGGCCCGAGCCTCCTCGTTTACAAGTCCTTGATTCTTGGGGTCCTGGTGACATTCT 354
||||||||| |||||||||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct 299 TATGAGGCCTGAGCCTCCTCGTTTACAAGTTCTTGATGCTTGGTGTCCTGGTGACATTCT 358
Query 355 TGAGGTTTTCGAAAGTTGTTCGTGGAAGATGGCAATCGTTTCCAAGGTTTT-GGAAAAAG 413
|||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 359 TGAGGTTTTCCAAAGTTGTTCGTGGAAGATGGCAATCGTTTCCAAGGTTTTAGG-AAACG 417
Query 414 GTTGTTTCTTGATTAGATTACTTGGTTCTTCAGTGAAGTTCAAGGTAACCAAATCCGACA 473
||||||||||| |||||||||||||||| ||| ||||||||||||| || |||||||| |
Sbjct 418 GTTGTTTCTTGGTTAGATTACTTGGTTCCTCACTGAAGTTCAAGGTGACTAAATCCGATA 477
Query 474 TTCGGGTTAGACAATCTTGGCAGGATAACGAGTGGATCATGATCGGACAGGGTGCATCAA 533
|||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||
Sbjct 478 TTCGGGTTAGACAATCTTGGCAAGATAACGAGTGGATCATGATTGGACAGGGTACATCAA 537
Query 534 GATTAAGCGCACAGACTTCAACAGGAGAATTAAGGAGAAAGGTGAATCCGAAAGCCGACT 593
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 538 GATTAAGCGCACAGACTTCAACAGGAGAACTAAGGAGAAAGGTGAATCCGAAAGGCGACT 597
Query 594 ACATTTCATCTGAGAGCAAAGACAAGCTCGATGAGACTGATGTACCTTTGTCAAAAAGTC 653
|||||||||||||||||||||||||||| |||||| ||||||||||||||||| | |||
Sbjct 598 ACATTTCATCTGAGAGCAAAGACAAGCTTGATGAGTCTGATGTACCTTTGTCAGTAGGTC 657
Query 654 TAAAGAAACGGACTTACTCTTTGGTTGAACCACATAATCAAACTAGAGTTTTA---GCTT 710
||||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||
Sbjct 658 TAAAGAAACGGACTTACTCTTTGGTTGAACCTCACAATCAAACTAGAGCTTTAGCTGCTT 717
Query 711 ATCCTCCAAAGTTTCATGAAAAAG-G-AA-AAGAAGAAGAAGATAGAGAGAGTGTTGCTT 767
||||||||| ||||| |||| ||| | || ||||||||||||||||||||||||||||||
Sbjct 718 ATCCTCCAAGGTTTCGTGAAGAAGTGAAAGAAGAAGAAGAAGATAGAGAGAGTGTTGCTT 777
Query 768 CTTCTGTTGGTAGTTGTAGCATGGATACGGATGGTCTCAGTGCTGTTTCATTCAATCCCA 827
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 778 CTTCTGTTGGTAGTTGTTGCATGGATACTGATGGTCTCAGTGCTGTTTCATTCAATCCCA 837
Query 828 TTGAAACCGGTAGCTCTAGTGACACAGAGTCATCATCTTGTGGCTACGGGAAGATCAAGA 887
|||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 838 TTGAAACCGGTAACTCTAGTGACACAGAGTCATCGTCTTGTGGCTACGGGAAGGTCAAGA 897
Query 888 AGTTGGGGGTTCCTCCAATAAAAAGCTCAGAGGCTGCTGATGTTCATAGGCTAGAGTTGG 947
|||||| || | ||||| |||| |||||||||||||||||||||||||| ||||| |||
Sbjct 898 AGTTGGTGG-T--TCCAAGAAAAGGCTCAGAGGCTGCTGATGTTCATAGGTTAGAGCTGG 954
Query 948 ATGCATACCGATGCAGTATCGAGAGATTGCACGCATCTGGACCAATTATAACTTGGGAAC 1007
||||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 955 ATGCATACCGAAGCAGTATCGAGAGATTGCACGCATCCGGACCAATCATAACATGGGAAC 1014
Query 1008 AAGAAACGTGGATAACAAATCTCCGTCTCAGATTGAACATTTCGAATGAGGAACATCTGA 1067
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1015 AAGAAACGTGGATTACAAATCTCCGTCTCAAATTGAACATTTCGAATGAGGAACATCTGA 1074
Query 1068 TGCAGATAAGAAACCTTATCTCTGATGATAACAGTACAATATACAGATAGCAGCAGCA 1125
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1075 TGCAGATAAGAAACCTTATCTCTGACGATAACAGTACTATATACAGATAGCAGCAGCA 1132
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5