BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488900 Length=1125 Score E Sequences producing significant alignments: (Bits) Value AT5G20030.1 | Symbols: | Plant Tudor-like RNA-binding protein ... 1568 0.0 > AT5G20030.1 | Symbols: | Plant Tudor-like RNA-binding protein | chr5:6764727-6766669 REVERSE LENGTH=1368 Length=1368 Score = 1568 bits (849), Expect = 0.0 Identities = 1045/1138 (92%), Gaps = 19/1138 (2%) Strand=Plus/Plus Query 1 CTTTTGATCCATGTTTGGTTGCCCAGAAA-ATCAAAG-AGGaaaaacaaaaaaaCAAAGC 58 ||||||||||| ||||||||||||||||| ||||||| | ||||||||| | Sbjct 1 CTTTTGATCCAAGTTTGGTTGCCCAGAAATATCAAAGAAAAAAAAACAAAGCTTTGTTGT 60 Query 59 TT-T-GTAGTAGAATCATTCATGGCTTTCTTTGCGTGTTAAACATTCACTAACCT-AAAA 115 || | | |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 61 TTCTGGCAGTAGAATCATTCATGGCTTTCTTTGCGTGTTAAACATTCACTAACCTAAAAA 120 Query 116 CTTCGTATTTTTG-AAGCAGCAATCATGAGATTCAAGAAGGGAACTAAAGTCGAAGTGTT 174 | | | || | ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 121 C-T-AAAACTTCGTTTTCAGCAATCATGAGATTCAACAAGGGAACTAAAGTCGAAGTGTT 178 Query 175 GAGCAAATCATCGGTTCCATCTGGTGCCTGGCGGTCTGCAGAGATCATATCGGGAAATGG 234 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 179 GAGCAAATCATCGGTTCCATCTGGCGCCTGGCGGTCTGCAGAGATCATATCAGGAAATGG 238 Query 235 GCATTATTACACTGTCATGTATGATCATGATGGTGGTACGGAGAGGGTACCGAGGAAGAG 294 |||||| ||||||||||||||||||||| ||| |||||| |||||||||||||||||||| Sbjct 239 GCATTACTACACTGTCATGTATGATCATAATGATGGTACAGAGAGGGTACCGAGGAAGAG 298 Query 295 TATGAGGCCCGAGCCTCCTCGTTTACAAGTCCTTGATTCTTGGGGTCCTGGTGACATTCT 354 ||||||||| |||||||||||||||||||| |||||| ||||| |||||||||||||||| Sbjct 299 TATGAGGCCTGAGCCTCCTCGTTTACAAGTTCTTGATGCTTGGTGTCCTGGTGACATTCT 358 Query 355 TGAGGTTTTCGAAAGTTGTTCGTGGAAGATGGCAATCGTTTCCAAGGTTTT-GGAAAAAG 413 |||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| | Sbjct 359 TGAGGTTTTCCAAAGTTGTTCGTGGAAGATGGCAATCGTTTCCAAGGTTTTAGG-AAACG 417 Query 414 GTTGTTTCTTGATTAGATTACTTGGTTCTTCAGTGAAGTTCAAGGTAACCAAATCCGACA 473 ||||||||||| |||||||||||||||| ||| ||||||||||||| || |||||||| | Sbjct 418 GTTGTTTCTTGGTTAGATTACTTGGTTCCTCACTGAAGTTCAAGGTGACTAAATCCGATA 477 Query 474 TTCGGGTTAGACAATCTTGGCAGGATAACGAGTGGATCATGATCGGACAGGGTGCATCAA 533 |||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||| Sbjct 478 TTCGGGTTAGACAATCTTGGCAAGATAACGAGTGGATCATGATTGGACAGGGTACATCAA 537 Query 534 GATTAAGCGCACAGACTTCAACAGGAGAATTAAGGAGAAAGGTGAATCCGAAAGCCGACT 593 ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 538 GATTAAGCGCACAGACTTCAACAGGAGAACTAAGGAGAAAGGTGAATCCGAAAGGCGACT 597 Query 594 ACATTTCATCTGAGAGCAAAGACAAGCTCGATGAGACTGATGTACCTTTGTCAAAAAGTC 653 |||||||||||||||||||||||||||| |||||| ||||||||||||||||| | ||| Sbjct 598 ACATTTCATCTGAGAGCAAAGACAAGCTTGATGAGTCTGATGTACCTTTGTCAGTAGGTC 657 Query 654 TAAAGAAACGGACTTACTCTTTGGTTGAACCACATAATCAAACTAGAGTTTTA---GCTT 710 ||||||||||||||||||||||||||||||| || ||||||||||||| |||| |||| Sbjct 658 TAAAGAAACGGACTTACTCTTTGGTTGAACCTCACAATCAAACTAGAGCTTTAGCTGCTT 717 Query 711 ATCCTCCAAAGTTTCATGAAAAAG-G-AA-AAGAAGAAGAAGATAGAGAGAGTGTTGCTT 767 ||||||||| ||||| |||| ||| | || |||||||||||||||||||||||||||||| Sbjct 718 ATCCTCCAAGGTTTCGTGAAGAAGTGAAAGAAGAAGAAGAAGATAGAGAGAGTGTTGCTT 777 Query 768 CTTCTGTTGGTAGTTGTAGCATGGATACGGATGGTCTCAGTGCTGTTTCATTCAATCCCA 827 ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct 778 CTTCTGTTGGTAGTTGTTGCATGGATACTGATGGTCTCAGTGCTGTTTCATTCAATCCCA 837 Query 828 TTGAAACCGGTAGCTCTAGTGACACAGAGTCATCATCTTGTGGCTACGGGAAGATCAAGA 887 |||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 838 TTGAAACCGGTAACTCTAGTGACACAGAGTCATCGTCTTGTGGCTACGGGAAGGTCAAGA 897 Query 888 AGTTGGGGGTTCCTCCAATAAAAAGCTCAGAGGCTGCTGATGTTCATAGGCTAGAGTTGG 947 |||||| || | ||||| |||| |||||||||||||||||||||||||| ||||| ||| Sbjct 898 AGTTGGTGG-T--TCCAAGAAAAGGCTCAGAGGCTGCTGATGTTCATAGGTTAGAGCTGG 954 Query 948 ATGCATACCGATGCAGTATCGAGAGATTGCACGCATCTGGACCAATTATAACTTGGGAAC 1007 ||||||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||||| Sbjct 955 ATGCATACCGAAGCAGTATCGAGAGATTGCACGCATCCGGACCAATCATAACATGGGAAC 1014 Query 1008 AAGAAACGTGGATAACAAATCTCCGTCTCAGATTGAACATTTCGAATGAGGAACATCTGA 1067 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1015 AAGAAACGTGGATTACAAATCTCCGTCTCAAATTGAACATTTCGAATGAGGAACATCTGA 1074 Query 1068 TGCAGATAAGAAACCTTATCTCTGATGATAACAGTACAATATACAGATAGCAGCAGCA 1125 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1075 TGCAGATAAGAAACCTTATCTCTGACGATAACAGTACTATATACAGATAGCAGCAGCA 1132 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55170398955 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5