BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488901
Length=1625
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20040.3 | Symbols: IPT9 | isopentenyltransferase 9 | chr5:6... 2200 0.0
> AT5G20040.3 | Symbols: IPT9 | isopentenyltransferase 9 | chr5:6767802-6771190
REVERSE LENGTH=1757
Length=1757
Score = 2200 bits (1191), Expect = 0.0
Identities = 1386/1477 (94%), Gaps = 26/1477 (2%)
Strand=Plus/Plus
Query 141 GTTTATAATGGTCATTAGCAGTGGCGTATTTTTGACCCGTACATGTTACTTGAAG-CTGC 199
|||||||||||| ||| ||||||||||||||||||||||||| ||||||||| || || |
Sbjct 204 GTTTATAATGGTGATTGGCAGTGGCGTATTTTTGACCCGTACCTGTTACTTG-AGACTTC 262
Query 200 AACCGCCAAGCCTTGTACTGCGCCGGAGATTCTGCGCAGCCACAACGGATTGCTCTGTTC 259
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 263 AACCGCCAAGCCTTGTACTGCGCCGGAGATTCTGCGCAGCCACCACGGCCTGCTCTGTTC 322
Query 260 CTCTGAACGGGACCAAGAAGAGAAAGTCTGAAAAGGAGAAGGTCATTGTGATTTCTGGGC 319
|||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 323 CTCTGAACGGGAACAAGAAGAAAAAGTCTGAAAAGGAGAAGGTGATTGTGATTTCTGGGC 382
Query 320 CCACCGGCGCCGGAAAAAGCAGACTTGCTATGGAGCTCGCCAAGCGTCTCAATGGCGAAA 379
|||||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 383 CCACCGGCGCAGGAAAGAGCAGACTTGCCATGGAGCTCGCTAAGCGACTCAATGGCGAAA 442
Query 380 TCATCAGTGCTGACTCCGTTCAGGTGTACAGAGGCCTTGATGTTGGATCAGCCAAGCCAT 439
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 443 TCATCAGTGCTGACTCCGTTCAGGTGTATAAAGGCCTTGATGTTGGATCAGCCAAGCCAT 502
Query 440 CAGATAGCGATAGAAAGGTGGTGCCTCATCATCTTATAGACATTTTGCATCCGTCTCAAG 499
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 503 CAGATAGCGATAGAAAGGTGGTGCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAG 562
Query 500 ACTACTCTGTGGGGCAATTTTTTGATGATGGAAGGCAAGCTACCAAGGATATTCTTAATA 559
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 563 ACTACTCTGTGGGGCAATTTTATGATGATGGAAGGCAAGCTACCAAAGATATTCTTAATA 622
Query 560 GAGGGCGTGTTCCCATTGTTACGGGTGGCACTGGATTGTATCTGCGATGGTTTATCTATG 619
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 623 GAGGGCGTGTTCCCATTGTTACGGGTGGAACTGGATTGTATCTGCGATGGTTTATGTATG 682
Query 620 GGAAGCCGGATGTGCCTAAACCTTCTCCAGAAGTCATCGCTGAGGCCCATGATATGCTAG 679
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 683 GGAAGCCGGATGTGCCTAAACCTTCTCCAGAAGTTATCGCTGAGGCCCATGATATGCTAG 742
Query 680 TTGATTTTCAAACCGAATATAACTGGGAAGCAGCTGTGGAATTGGTGGTCAATGCTGGTG 739
||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 743 TTGGTTTTCAAACCGAATATAACTGGGACGCAGCTGTGGAGTTGGTGGTCAATGCTGGTG 802
Query 740 ATCCAAAAGCCTGTTCTTTACCTCGTAATGATTGGTACAGACTACGTCGTAGCCTCGAGA 799
|||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 803 ATCCAAAAGCTTCTTCTTTACCTCGTAATGATTGGTACAGACTACGCCGTAGCCTCGAGA 862
Query 800 TACTCAAGTCAACTGGATCTCCGCCGTCTTCCTTTCGCATTCCATATGATT-CTTTCCGA 858
||||||||||||||||||| || |||||||||||||||||||| ||||||| |||| |||
Sbjct 863 TACTCAAGTCAACTGGATCGCCTCCGTCTTCCTTTCGCATTCCTTATGATTCCTTT-CGA 921
Query 859 GAAAATTTAAATT-CTCCTGATGCCGATGACTTGCTTGAGGACGGTTCATCTGCTGATAT 917
| |||||| | || |||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 922 GTAAATTT-AGTTGCTCCTGATGCTGATGACTTCCTTGAGGACGGTTCATCTGCCGATAT 980
Query 918 CTCCATCCAAAACATAGAGACAGATTTGGACTATGACTTCCTTTGTTTTTTCTTGTCAAG 977
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 981 CTCTATCCAAAACATAGAGACAGATTTGGACTATGACTTTCTTTGTTTTTTCTTGTCAAG 1040
Query 978 CCCACGGGTTGCTCTCTACAGATCTATTGATTTCAGATGTGAAGACATGCTTTCAGGACC 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 CCCACGGGTTGCTCTCTACAGATCTATTGATTTCAGATGTGAAGACATGCTTTCAGGACC 1100
Query 1038 CAATGGAGTTTTGTCAGAAGCTAGATGGCTTCTTGATCTTGGTCTTCTTCCAAACACAAA 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1101 CAATGGAGTTTTGTCAGAAGCTAGATGGCTTCTTGATCTTGGTCTTCTTCCAAACTCAAA 1160
Query 1098 TCCTGCAACTCGTGCTATTGGGTACAGACAGG----C-C---AT-----G----G-AATA 1139
||||||||||||||| |||||||||||||||| | | || | | ||||
Sbjct 1161 TCCTGCAACTCGTGCCATTGGGTACAGACAGGTGAACTCTTTATTTCCTGCCATGGAATA 1220
Query 1140 TCTACTGA-AATGCCGTCGATATGAGGGTGAAAGTTCCCCTAGAGAATTTTATGGTTTCT 1198
|||| | | |||| |||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1221 TCTATT-ACAATGTCGTCGATATGAGGGCGAAAGTTCCCCTAGAGAATTTTATGCTTTCT 1279
Query 1199 TGAACAAATTTCAGACAGCATCCAGAAACTTTGCAAAAAGGCAAATGACATGGTTCAGGT 1258
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1280 TGAACAAATTTCAGACAGCATCCAGAAACTTTGCAAAAAGGCAAATGACATGGTTCCGGT 1339
Query 1259 GTGAGCCTATGTACCACTGGCTTAATGCTTCTAAACCTCTGGATTCGATACTTCAATGCA 1318
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 1340 GTGAGCCTATGTACCACTGGCTCAATGCTTCCAAACCTCTGGATTCAATACTTCAATGCA 1399
Query 1319 TATATGATGCTTATGAGAGCGAAGCAGAGACGGTGGAGATACCAGAGTCTCTAAGAATGA 1378
|||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1400 TATACGATGCTTATGAGAGCGAAGCAGAGATGGTGGAGATACCGGAGTCTCTAAGAATGA 1459
Query 1379 GCAAAGACGTAAGAGATTCCCGAGAAGCTTCTGAACTAAAGTTGTACCGCTCCAAAAACA 1438
||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||
Sbjct 1460 GCAAAGACGTAAGAGATTCTCGAGAAGCTTCTGAACTAAAGGGGTATCGCTCCAAAAACA 1519
Query 1439 GGCATTTCGTAAGACGAGAGGACTGTGATTCGGTGTTAGAGTGGATCAGAAGTGAAGGAT 1498
|||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||
Sbjct 1520 GGCATTTCGTAAGACGAGAGGACTGTTCTTCGGTGTTAGAATGGATCAGGAGTGAAGGAT 1579
Query 1499 GTAAGACTGAAGCTTCATGTGTGGAAAGCGCAGTAGCATAACCACTGCTTCATTCTATCC 1558
|||||| |||||||||||| |||||||||||| |||||||| |||||||||||| |||||
Sbjct 1580 GTAAGAGTGAAGCTTCATGCGTGGAAAGCGCAATAGCATAAACACTGCTTCATTTTATCC 1639
Query 1559 GGaaaagccaaaaccaaaaccaaaacaaaaGTGTGTT 1595
|||||||||||||||||||||||||||||||||||||
Sbjct 1640 GGAAAAGCCAAAACCAAAACCAAAACAAAAGTGTGTT 1676
Score = 150 bits (81), Expect = 3e-35
Identities = 94/100 (94%), Gaps = 2/100 (2%)
Strand=Plus/Plus
Query 1 GTTCGGTTAATGTGTAAACCTAACCGAACCGTAGTTCTCTAATCCCTTGCTCACACTGTC 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 25 GTTCGGTTTATGTGTAAACCTAACCGAACCGTAGTTCTCTAATCCCTTGCTCAC--TGTC 82
Query 61 GTCGTCTCTCTTCGAGATGAGCTTTTGCGCGGGTCATCCT 100
|||||||||||||||||||||||| ||||||||| ||||
Sbjct 83 TTCGTCTCTCTTCGAGATGAGCTTTCGCGCGGGTCGTCCT 122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80270671455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5