BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488903
Length=1528
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20050.1 | Symbols: | Protein kinase superfamily protein | ... 2364 0.0
> AT5G20050.1 | Symbols: | Protein kinase superfamily protein
| chr5:6774302-6775845 FORWARD LENGTH=1544
Length=1544
Score = 2364 bits (1280), Expect = 0.0
Identities = 1466/1551 (95%), Gaps = 32/1551 (2%)
Strand=Plus/Plus
Query 1 GAAATATTTCGTCTTTGTTCTGGTCACGAGAGTG-TTCATCAGAAGGaaaaaaaaaaTGA 59
||||||||||||||||||||| ||||| |||||| || ||| | ||| ||||||
Sbjct 1 GAAATATTTCGTCTTTGTTCTCGTCACCAGAGTGCTT-ATC----TG---AAAGAAATGA 52
Query 60 TGTCAGAGAAGCTCTAAAAG-CCTTCTAATGGAGGACAAGAAAGCAAACATAATCGCTAC 118
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 53 AGTCAGAGAAGCTCTAAAAGACC-TCTAATGGAGGACAAGAAAGCAAACATAATCGCTAC 111
Query 119 TATATTAATCTTAGCCCTTGTCGTGGTGATAATCGCCGCCCGAGTTTCTCTAAAACTCTC 178
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 112 TATATTAATCTTAGCCCTTGTCGTAGTGATAATCGCCGCCCGAGTTTCTCTAAAACTCTC 171
Query 179 CAAAACATTCTATCTCATCGCCGGCGTCGACATTTCCTTGATCCTCGCCGTGATCTGTTT 238
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 172 CAAAACATTCTATCTCATAGCCGGCGTCGACATTTCCTTGATCCTCGCCGTGATCTGTTT 231
Query 239 CCTCATAATCCGTAGCCGTTACAACAAAGAAAGAAAGCTCTTGGTATCAAGATTTGTCTC 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 232 CCTCATAATCCGTAGCCGTTACAACAAAGAAAGAAAGCTCTTGGTATCAAGATTCGCCTC 291
Query 299 CGAAGGCAGAGAGCTCCGAATCGAGTACAGTTTCTTGAGAAAAGTCGCAGGGGTTCCAAC 358
||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 292 CGAAGGCAGAGAGCTACGAATCGAGTACAGTTTCTTGAGAAAAGTCGCCGGAGTTCCAAC 351
Query 359 GAAATTCAAGCTCGAAGATCTTGAAGAAGCCACCGATGGATTCAGATCTTTGATCGGAAA 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CAAATTCAAGCTCGAAGATCTTGAAGAAGCCACCGATGGATTCAGATCTTTGATCGGAAA 411
Query 419 AGGCGGTTCTGGTTCGGTGTTTAAAGGAGTTTTGAAAGACGGAAGTCAAGTAGCTGTGAA 478
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 AGGCGGTTCCGGTTCGGTGTTTAAAGGAGTTTTGAAAGACGGAAGTCAAGTAGCTGTGAA 471
Query 479 AAGAATCGAAGGAGAAGAGAAAGGAGAAAGAGAGTTCAGATCCGAAGTAGCTGCCATAGC 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GAGAATCGAAGGAGAAGAGAAAGGAGAAAGAGAGTTCAGATCCGAAGTAGCTGCCATAGC 531
Query 539 TTCTGTTCAGCACAAGAACCTAGTTCGTCTTTACGGTTATTCGTCTGCGGTTTCCGCGAA 598
||| |||||||||||||| ||||||||||||||||||||||||||| || | ||||||
Sbjct 532 TTCCGTTCAGCACAAGAATCTAGTTCGTCTTTACGGTTATTCGTCTTCGACTAGCGCGAA 591
Query 599 TCGTCCGAGATTCCTCGTTTACGATTATATCGTAAACTCGTCTCTCGATATCTGGATTTT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TCGTCCGAGATTCCTCGTTTACGATTATATCGTAAACTCGTCTCTCGATATCTGGATTTT 651
Query 659 TCCGGATAGAGGAAACAGAAGAAGATGCGGAGGAGGATGCTTGTCTTGGGAACAAAGGTA 718
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 652 TCCGGATAGAGGAAACAGAGGAAGATCCGGAGGAGGATGCTTGTCTTGGGAACAAAGGTA 711
Query 719 CCAAGTTGCTATTGATGTAGCTAAAGCTCTTGCTTATCTTCATCATGATTGTCGATCTAA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 CCAAGTTGCTATTGATGTAGCTAAAGCTCTTGCTTATCTTCATCATGATTGTCGATCTAA 771
Query 779 GATCTTGCATCTTGATGTTAAACCTGAAAACATTCTACTAGACGAGAATTTCCGAGCGGT 838
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 772 GATCTTGCATCTCGATGTTAAACCCGAAAACATTCTACTAGACGAGAATTTCCGAGCGGT 831
Query 839 GGTAACCGATTTCGGACTCTCTAAGCTGATTGCTAGAGATGAGAGCAGAGTGCTAACGGA 898
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 832 GGTAACCGATTTCGGACTCTCTAAGCTGATTGCTAGAGATGAGAGCAGAGTACTAACGGA 891
Query 899 TATCCGTGGGACTCGGGGGTATTTAGCCCCCGAATGGCTTCTTGAACACGGTATTTCGGA 958
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 892 TATCCGTGGTACTCGGGGGTATTTAGCCCCCGAGTGGCTTCTTGAACACGGTATTTCGGA 951
Query 959 GAAATCCGACGTTTACAGCTACGGGATTGTGTTACTAGAAATGATCGGAGGACGGAGAAG 1018
||||||||| || || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 952 GAAATCCGATGTGTATAGCTACGGGATTGTGTTACTAGAGATGATCGGAGGACGGAGAAG 1011
Query 1019 CATTTCAAGGGTAGAGGTTAAGGAAACAAAAAAGAAGAAGTTGGAGTATTTCCCAAGGAT 1078
||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1012 CATTTCAAGGGTAGAAGTTAAGGAAACAAAAAAGAAGAAATTAGAGTATTTCCCAAGGAT 1071
Query 1079 TGTGAACCAAAAGATGAGAGAAAGAAAAATAATGGAGATTGTAGATCAAAGGCTGATAGA 1138
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 1072 TGTGAACCAAAAGATGAGAGAAAGAAAGATAATGGAGATTGTTGATCAAAGGCTGATTGA 1131
Query 1139 AGCCAATGAGGTAAATGAAGAGGAAGTGATGAAATTGGCGTGTGTGGCTTTGTGGTGTAT 1198
|| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1132 AGTTAATGAGGTAGATGAAGAGGAAGTGATGAAATTGGTGTGTGTGGCTTTGTGGTGTAT 1191
Query 1199 ACAAGAGAAATCTAAGAATAGGCCTGATATGACTATGGTAATTGAAATGATTGAAGGGAG 1258
||||||||| |||||||| |||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 1192 ACAAGAGAAGTCTAAGAAAAGGCCTGATATGACTATGGTTATTGAGATGCTTGAAGGGAG 1251
Query 1259 AGTTCCGGTGAACGAGCCGCCGGATTCAGATGTTGTTGTGGTCGATCTTTTGGCGGCTGA 1318
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 AGTTCCGGTGAACGAGCCACCGGATTCAGATGTTGTTGTGGTCGATCTTTTGGCGGCTGA 1311
Query 1319 TGATGATGATGCAAGTACCGGTGTTCGACGGGTAATAAATATCCCGAAATTGCAAATCCA 1378
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1312 TGATGATGATGCAAGTACCGGTGTTCGACGGGTAGTAAATATCCCGAAATTGCAAATCCA 1371
Query 1379 TAGGGAGAGGAATTTTCGTTTATCATCCATTTGCTCTAGTATCATATCTCCCATATCTCC 1438
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1372 TAGGGAGAGGAATTTTCGTTTATCATCCATTTGCTCTAGTATCATATCTCCCATCTCTCC 1431
Query 1439 ACGCTAG--ATTTTTGT-T-TT------G-TTT-----CAATCTAAAACTGAGTATGTTT 1482
||||||| |||||||| | || | ||| ||||| ||||||||||||||||
Sbjct 1432 ACGCTAGTTATTTTTGTGTGTTCATATTGGTTTTGTTTCAATCAAAAACTGAGTATGTTT 1491
Query 1483 GGTGTGTTACTATTAATCA---TTTGATATGTA-A-TAAACACAATTTATA 1528
||||||||||||||||||| ||||||| ||| | |||||||||||||||
Sbjct 1492 GGTGTGTTACTATTAATCAACCTTTGATACGTATAATAAACACAATTTATA 1542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75401218590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5