BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488907
Length=1481
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20070.1 | Symbols: ATNUDT19, ATNUDX19, NUDX19 | nudix hydro... 2259 0.0
> AT5G20070.1 | Symbols: ATNUDT19, ATNUDX19, NUDX19 | nudix hydrolase
homolog 19 | chr5:6779854-6782482 FORWARD LENGTH=1530
Length=1530
Score = 2259 bits (1223), Expect = 0.0
Identities = 1355/1420 (95%), Gaps = 3/1420 (0%)
Strand=Plus/Plus
Query 2 AAACAATGGGGAGAAGAAAACAGAGATGctcgctctctttctctcctcttcttcgtatcc 61
|||||||||||||| |||| |||||||||| |||||||| ||||| ||||||||||||||
Sbjct 15 AAACAATGGGGAGACGAAACCAGAGATGCTTGCTCTCTTCCTCTCTTCTTCTTCGTATCC 74
Query 62 aactctctctttcttctcCAGATCAGTAACTCTAAACTTAGCAAGAAGAACAACACTCTC 121
||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 75 AACTCTCTCTTTCCTCTCCAGATCAGTAACTCTAAACTTAGCCAGAACAACAACACTCTC 134
Query 122 TGCTCTCACAATGTCGATGAACCTAAAGACTCATGCCTTCGCAGGCAATCCCTTGAAGTC 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 AGCTCTCACAATGTCGATGAACCTAAAGACTCATGCCTTCGCAGGCAATCCCTTGAAGTC 194
Query 182 CAAAACTCCGAAATCCACCGATCCTTTCTCACCCACCTCCGCTTTCGAATCCCTGAAAAC 241
|||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 195 GAAAACTCCGAAATCTACCGATCCATTCTCACCCACCTCCGCTTTCGAATCTCTGAAAAC 254
Query 242 CCTAATTCCAGTGATCCCAAATCACTCCACACATTCCCCTGATTTTAAAGTCCTTCCCTT 301
|||||||||||| ||||| |||||||| |||| |||||||||||||||||||||||||||
Sbjct 255 CCTAATTCCAGTAATCCCTAATCACTCAACACCTTCCCCTGATTTTAAAGTCCTTCCCTT 314
Query 302 TAGCAAAGGCCGTCCACTGGTGTTCTCGAGCGGTGGAGATGCTAATACGACGCCGATTTG 361
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 315 TAGCAAGGGTCGTCCACTGGTGTTCTCAAGCGGTGGAGATGCTAATACGACGCCGATTTG 374
Query 362 GCATCTGGGTTGGGTCAGCTTGGCTGATTGTAAGGTTTTGTTAGCGAGTTGTGGGGTTGA 421
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 375 GCATCTGGGTTGGGTCAGCTTGGCTGATTGTAAGGTTTTGTTAGCAAGTTGTGGGGTTGA 434
Query 422 TCTGAACGAGGACTCGCTTGTGTATTTAGGTCCCAAGGTGGAAGAAGATTTGGTGTATTG 481
|||||| |||||||| || ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 435 TCTGAATGAGGACTCACTCGTGTATTTAGGACCCAAGTTGGAAGAAGATTTGGTGTATTG 494
Query 482 GGCTGTTGATTTGGCAGAGGATGGTTTCGTTTCTGAATTGGGAGGGCGGAAGTTGTGTTT 541
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 495 GGCTGTTGATTTGGCAGAGGATGGTTTCGTTTCTGAATTGGGAGGTAGGAAGTTGTGTTT 554
Query 542 TGTTGAGCTTCGAACCCTAATGGTAGCTGCTGATTGGGCGGATCAACGTGCTATGGATGA 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 TGTTGAGCTTCGAACCCTAATGGTAGCTGCTGATTGGGCGGATCAACGTGCTATGGATGA 614
Query 602 ATTGGCTATTGCCGGCAATGCCAGGGCATTACTTGAATGGCACATCGTATCACGATTTTG 661
|||||||||||||||||||||||||| |||||||||||||||| ||| |||| ||||||
Sbjct 615 GTTGGCTATTGCCGGCAATGCCAGGGCGTTACTTGAATGGCACAACGTGTCACAATTTTG 674
Query 662 TGGATCTTGTGGAGGTAAAACTGTTCCAAAGGAAGCAGGAAGGAGAAAACAATGCTCAAA 721
|||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 675 TGGATCATGTGGAAGTAAAACTTTTCCAAAGGAAGCAGGAAGGAGAAAACAATGCTCAGA 734
Query 722 CGAAACATGCAGAAAGAGGGTCTATCCCCGTGTTGACCCGGTGGTTATTATGTTAGTTAT 781
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 735 CGAAACATGCAGAAAGAGGGTCTATCCCCGTGTTGATCCGGTGGTTATAATGTTAGTTAT 794
Query 782 TGATCGAGAAAATGATCGCGCACTTTTAAGCAGGCAATCTAGATATGTACCGAGAATGTG 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 TGATCGAGAAAATGATCGCGCACTTTTAAGCAGGCAATCTAGATATGTACCGAGAATGTG 854
Query 842 GAGCTGTTTAGCTGGATTTATTGAGCCAGGGGAAAGCTTAGAAGAGGCTGTGAGGCGGGA 901
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 GAGTTGTTTAGCTGGATTTATTGAGCCAGGGGAAAGCTTAGAAGAGGCTGTGAGGCGGGA 914
Query 902 AACATGGGAAGAGACAGGCATTGAAGTAGGAGAAGTTGTCTACCACAGCTCTCAGCCTTG 961
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 915 AACATGGGAAGAGACAGGCATTGAAGTAGGAGATGTTGTATACCACAGCTCTCAGCCTTG 974
Query 962 GCCTGTGGGACCAAGTAGCATGCCATGCCAATTGATGCTGGGGTTCTTTGCTTTCGCCAA 1021
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 975 GCCTGTGGGACCAAGTAGCATGCCATGCCAATTGATGCTCGGTTTCTTTGCTTTCGCCAA 1034
Query 1022 GACGCTTGACATAAACGTAGACAAAGAAGAGTTAGAAGATGCTCAATGGCACAGTAGAGA 1081
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 GACGCTCGACATAAACGTAGACAAAGAAGAGTTAGAAGATGCTCAATGGCACAGTAGAGA 1094
Query 1082 AGAGGTGAAGAAAGCACTGGCGGTTGCAGAATACAGGAAAGCGCAAAGAACAGCGGCTGC 1141
|||||||||||||||| |||||||||||||||||||||| || ||||||||||| |||||
Sbjct 1095 AGAGGTGAAGAAAGCATTGGCGGTTGCAGAATACAGGAAGGCTCAAAGAACAGCAGCTGC 1154
Query 1142 AAAGGTAGAGCAGATCTGTAAAGGTGTGGAGAGAAGCCAGAGTCTATCAACTGATTTCAA 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 AAAGGTAGAGCAGATCTGTAAAGGTGTGGAGAGAAGCCAGAGTCTATCAACTGATTTCAA 1214
Query 1202 TCTCGAAAGCGGTGAGCTTGCTCCTATGTTTATCCCAGGGCCATTTGCCATTGCGCACCA 1261
||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1215 TCTTGAAAGCGGTGAGCTTGCTCCTATGTTTATCCCGGGGCCATTTGCCATCGCGCACCA 1274
Query 1262 CCTGATCTCAGCATGGGTAGATCAAGCTCCTGGCGATGTTCACTCAAAACAACAAGCCGG 1321
||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| ||
Sbjct 1275 CCTGATCTCAGCATGGGTAAATCAGGCTCCTGACGATGTTCACTCAAAACAACAAGCGGG 1334
Query 1322 TGTCTCTCTCTCAAGTTTGTAGCTAGAAAGATGAGTTT-GATGCTTAGAAACCAAACGTT 1380
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1335 TGTCTCTCTCTCAAGTTTGTAGCTAGAAAGATGAACTTAGATGCTTAGAAACCAAACGTT 1394
Query 1381 TGCTATGG-TTCTGATACGTATCTTGAATTGATGAGTCCT 1419
|||||||| |||| || | ||| |||||||| ||||||||
Sbjct 1395 TGCTATGGCTTCT-ATGCTTATTTTGAATTGCTGAGTCCT 1433
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73041792975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5